ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast01f11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009005.1| Triticum aestivum clone wdk2c.pk018.g2:fis, full insert mRNA sequence Length = 1782 Score = 87.7 bits (44), Expect = 2e-14 Identities = 63/69 (91%), Gaps = 4/69 (5%) Strand = Plus / Minus Query: 189 tagtaacctatccaaatccatgcacagcatgcacgcacgcagctagtctccatcgatccg 248 |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | Sbjct: 949 tagtaacctatccaaatccatgcacaacat----gcacgcagctagtctccatcgatctg 894 Query: 249 tcggtctca 257 ||||||||| Sbjct: 893 tcggtctca 885 Score = 83.8 bits (42), Expect = 3e-13 Identities = 70/77 (90%), Gaps = 3/77 (3%) Strand = Plus / Minus Query: 76 atcttatcacatcttaagcccatcttaacagggggagaaaagaaagagaacaaaaatgga 135 |||||||| ||||||| ||||||| |||||||| |||||||||||||||||||||||| Sbjct: 1053 atcttatcgcatctta-gcccatc--aacaggggaggaaaagaaagagaacaaaaatgga 997 Query: 136 catttaacaacaaaaga 152 |||||||||| |||||| Sbjct: 996 catttaacaaaaaaaga 980
>gb|AC126683.4| Mus musculus BAC clone RP23-62G15 from 6, complete sequence Length = 167297 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Plus Query: 113 aaaagaaagagaacaaaaatggac 136 |||||||||||||||||||||||| Sbjct: 32531 aaaagaaagagaacaaaaatggac 32554
>gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, complete sequence Length = 179732 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Plus Query: 113 aaaagaaagagaacaaaaatggac 136 |||||||||||||||||||||||| Sbjct: 179339 aaaagaaagagaacaaaaatggac 179362
>gb|U12965.1| Caenorhabditis elegans cosmid F23F12, complete sequence Length = 34609 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Plus Query: 149 aagaagaagatcagaagaagaag 171 ||||||||||||||||||||||| Sbjct: 10898 aagaagaagatcagaagaagaag 10920
>ref|NM_066026.2| Caenorhabditis elegans F23F12.8 (F23F12.8) mRNA, complete cds Length = 2943 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Plus Query: 149 aagaagaagatcagaagaagaag 171 ||||||||||||||||||||||| Sbjct: 1472 aagaagaagatcagaagaagaag 1494
>emb|AL606463.6| Human DNA sequence from clone RP11-485D21 on chromosome 1 Contains the 5' end of a novel gene, complete sequence Length = 159304 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 tcagaagaagaagcagccagca 180 |||||||||||||||||||||| Sbjct: 58086 tcagaagaagaagcagccagca 58107
>emb|AL138882.8| Human DNA sequence from clone RP1-195K21 on chromosome 6 Contains part of the KHDRBS2 gene for KH domain containing RNA binding signal transduction associated protein 2, complete sequence Length = 75512 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1 cttttttaagatcaaatgcagc 22 |||||||||||||||||||||| Sbjct: 17761 cttttttaagatcaaatgcagc 17740
>ref|XM_781336.1| PREDICTED: Strongylocentrotus purpuratus similar to CG6772-PA, isoform A (LOC581330), mRNA Length = 1821 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 aagaagatcagaagaagaagca 173 |||||||||||||||||||||| Sbjct: 149 aagaagatcagaagaagaagca 128
>gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155413 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1 cttttttaagatcaaatgcagc 22 |||||||||||||||||||||| Sbjct: 63033 cttttttaagatcaaatgcagc 63012
>gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete sequence Length = 177471 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 cttttttaagatcaaatgcagc 22 |||||||||||||||||||||| Sbjct: 82199 cttttttaagatcaaatgcagc 82220
>ref|NM_030771.1| Homo sapiens coiled-coil domain containing 34 (CCDC34), transcript variant 1, mRNA Length = 1488 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 agaaaagaaagagaacaaaaa 131 ||||||||||||||||||||| Sbjct: 664 agaaaagaaagagaacaaaaa 684
>gb|AC117994.12| Mus musculus chromosome 6, clone RP23-25K2, complete sequence Length = 237945 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Plus Query: 147 aaaagaagaagatcagaagaagaagcagc 175 |||||||||||| ||||||||||||||| Sbjct: 142010 aaaagaagaagaaaagaagaagaagcagc 142038
>gb|AC016158.4| Drosophila melanogaster clone BACR38H07, complete sequence Length = 172841 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 aagaaagagaacaaaaatgga 135 ||||||||||||||||||||| Sbjct: 35040 aagaaagagaacaaaaatgga 35060
>gb|AC152940.2| Mus musculus BAC clone RP23-264B6 from chromosome 15, complete sequence Length = 224704 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 agggggagaaaagaaagagaa 125 ||||||||||||||||||||| Sbjct: 4489 agggggagaaaagaaagagaa 4509
>ref|XM_534097.2| PREDICTED: Canis familiaris hypothetical LOC476895 (LOC476895), mRNA Length = 1385 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 agaaaagaaagagaacaaaaa 131 ||||||||||||||||||||| Sbjct: 555 agaaaagaaagagaacaaaaa 575
>gb|AC126028.4| Mus musculus BAC clone RP24-542M6 from chromosome 15, complete sequence Length = 168344 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 agggggagaaaagaaagagaa 125 ||||||||||||||||||||| Sbjct: 103009 agggggagaaaagaaagagaa 102989
>gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosome 3, complete sequence Length = 187416 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 agaaaagaaagagaacaaaaa 131 ||||||||||||||||||||| Sbjct: 168136 agaaaagaaagagaacaaaaa 168116
>gb|AC158150.9| Mus musculus chromosome 5, clone RP23-173B13, complete sequence Length = 227131 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 aacaaaaatggacatttaaca 144 ||||||||||||||||||||| Sbjct: 151030 aacaaaaatggacatttaaca 151050
>gb|AC090597.9| Homo sapiens chromosome 11, clone RP11-541L7, complete sequence Length = 160210 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 agaaaagaaagagaacaaaaa 131 ||||||||||||||||||||| Sbjct: 95861 agaaaagaaagagaacaaaaa 95841
>emb|AL034372.33|HS273P12 Human DNA sequence from clone RP1-273P12 on chromosome 6p22.3-23 Contains an esterase D/formylglutathione hydrolase (ESD) pseudogene, the 5' part of the CAP2 gene encoding adenylyl cyclase-associated protein 2 and a 60S ribosomal protein L7 (RPL7) pseudogene, complete sequence Length = 166234 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 aaaagaaagagaacaaaaatg 133 ||||||||||||||||||||| Sbjct: 162477 aaaagaaagagaacaaaaatg 162457
>gb|AC182253.3| Mus musculus BAC clone RP24-320A8 from chromosome y, complete sequence Length = 181955 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 gaaagagaacaaaaatggaca 137 ||||||||||||||||||||| Sbjct: 179250 gaaagagaacaaaaatggaca 179230 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 gaaagagaacaaaaatggaca 137 ||||||||||||||||||||| Sbjct: 131403 gaaagagaacaaaaatggaca 131383
>emb|CR597641.1| full-length cDNA clone CL0BB027ZF04 of Neuroblastoma of Homo sapiens (human) Length = 1349 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 agaaaagaaagagaacaaaaa 131 ||||||||||||||||||||| Sbjct: 545 agaaaagaaagagaacaaaaa 565
>gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, complete sequence Length = 126394 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 ttaacaacaaaagaagaagat 159 ||||||||||||||||||||| Sbjct: 87450 ttaacaacaaaagaagaagat 87430
>dbj|AK149154.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120489L05 product:unclassifiable, full insert sequence Length = 2913 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 agggggagaaaagaaagagaa 125 ||||||||||||||||||||| Sbjct: 2698 agggggagaaaagaaagagaa 2718
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 gaaaagaaagagaacaaaaat 132 ||||||||||||||||||||| Sbjct: 11139849 gaaaagaaagagaacaaaaat 11139829
>gb|AC008364.5|AC008364 Drosophila melanogaster, chromosome 3R, region 92D-92D, BAC clone BACR09G02, complete sequence Length = 166642 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 aagaaagagaacaaaaatgga 135 ||||||||||||||||||||| Sbjct: 162817 aagaaagagaacaaaaatgga 162837
>ref|XM_223647.3| PREDICTED: Rattus norvegicus sprouty-related, EVH1 domain containing 2 (predicted) (Spred2_predicted), mRNA Length = 2965 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 ggggagaaaagaaagagaacaaaaa 131 ||||||||||||||||||| ||||| Sbjct: 2187 ggggagaaaagaaagagaaaaaaaa 2163
>gb|AF382034.1| Homo sapiens hypothetical protein RAMA3 mRNA, complete cds Length = 1375 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 agaaaagaaagagaacaaaaa 131 ||||||||||||||||||||| Sbjct: 552 agaaaagaaagagaacaaaaa 572
>emb|BX119978.6| Mouse DNA sequence from clone RP23-354H3 on chromosome X, complete sequence Length = 72115 Score = 42.1 bits (21), Expect = 0.99 Identities = 27/29 (93%) Strand = Plus / Minus Query: 149 aagaagaagatcagaagaagaagcagcca 177 |||||||||| ||||||||||||||||| Sbjct: 21652 aagaagaagaaaagaagaagaagcagcca 21624
>gb|AE003730.3| Drosophila melanogaster chromosome 3R, section 68 of 118 of the complete sequence Length = 221402 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 aagaaagagaacaaaaatgga 135 ||||||||||||||||||||| Sbjct: 367 aagaaagagaacaaaaatgga 387
>gb|AC113061.9| Mus musculus chromosome 14, clone RP23-255H22, complete sequence Length = 190623 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 aagaaagagaacaaaaatgga 135 ||||||||||||||||||||| Sbjct: 147994 aagaaagagaacaaaaatgga 147974
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 gaaaagaaagagaacaaaaat 132 ||||||||||||||||||||| Sbjct: 11139548 gaaaagaaagagaacaaaaat 11139528
>gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome 3, complete sequence Length = 200505 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 agaaaagaaagagaacaaaaa 131 ||||||||||||||||||||| Sbjct: 156331 agaaaagaaagagaacaaaaa 156351
>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157771 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 gaaaagaaagagaacaaaaat 132 ||||||||||||||||||||| Sbjct: 46326 gaaaagaaagagaacaaaaat 46346
>gb|BC029421.1| Homo sapiens coiled-coil domain containing 34, mRNA (cDNA clone IMAGE:4806810), containing frame-shift errors Length = 1163 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 agaaaagaaagagaacaaaaa 131 ||||||||||||||||||||| Sbjct: 339 agaaaagaaagagaacaaaaa 359
>gb|AC144632.4| Mus musculus BAC clone RP23-106G16 from chromosome 15, complete sequence Length = 206265 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 agggggagaaaagaaagagaa 125 ||||||||||||||||||||| Sbjct: 200302 agggggagaaaagaaagagaa 200322
>emb|AL831786.7| Mouse DNA sequence from clone RP23-177C18 on chromosome 4, complete sequence Length = 80871 Score = 42.1 bits (21), Expect = 0.99 Identities = 24/25 (96%) Strand = Plus / Plus Query: 107 ggggagaaaagaaagagaacaaaaa 131 ||||| ||||||||||||||||||| Sbjct: 41882 ggggaaaaaagaaagagaacaaaaa 41906
>gb|BT023919.1| Drosophila melanogaster RH42017 full insert cDNA Length = 5245 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gatcagaagaagaagcagcc 176 |||||||||||||||||||| Sbjct: 501 gatcagaagaagaagcagcc 520
>ref|XM_629787.1| Dictyostelium discoideum hypothetical protein (DDB0184184), partial mRNA Length = 774 Score = 40.1 bits (20), Expect = 3.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 126 caaaaatgga-catttaacaacaaaaga 152 |||||||||| ||||||||||||||||| Sbjct: 47 caaaaatggatcatttaacaacaaaaga 74
>gb|AC108777.7| Mus musculus chromosome 18, clone RP23-368H22, complete sequence Length = 216024 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Plus Query: 149 aagaagaagatcagaagaagaagcagccagc 179 |||||||||| ||||||||||||||||||| Sbjct: 38778 aagaagaaga--agaagaagaagcagccagc 38806
>gb|AC157598.4| Mus musculus BAC clone RP23-193D3 from chromosome 17, complete sequence Length = 222399 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 gggagaaaagaaagagaacaaaaa 131 |||||||||||||||||| ||||| Sbjct: 1490 gggagaaaagaaagagaagaaaaa 1467
>gb|U51997.1| Caenorhabditis elegans cosmid F19G12, complete sequence Length = 28537 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gcttgaattttcttcttctt 299 |||||||||||||||||||| Sbjct: 27527 gcttgaattttcttcttctt 27546
>gb|AC130697.10| Mus musculus chromosome 15, clone RP24-121O7, complete sequence Length = 152112 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 gggagaaaagaaagagaacaaaaa 131 |||||||||||||||||| ||||| Sbjct: 94505 gggagaaaagaaagagaaaaaaaa 94528
>gb|AC168275.4| Mus musculus 10 BAC RP23-350O21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188458 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 agccagcaagaagtagtagt 192 |||||||||||||||||||| Sbjct: 83749 agccagcaagaagtagtagt 83768
>gb|AC150644.4| Bos taurus BAC CH240-223I2 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 199501 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 agaaaagaaagagaacaaaa 130 |||||||||||||||||||| Sbjct: 4559 agaaaagaaagagaacaaaa 4540
>ref|XM_865217.1| PREDICTED: Bos taurus similar to Matrix extracellular phosphoglycoprotein precursor (Osteoblast/osteocyte factor 45) (OF45) (LOC613958), mRNA Length = 1416 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 gggggagaaaagaaagagaacaaa 129 ||||||||||| |||||||||||| Sbjct: 670 gggggagaaaacaaagagaacaaa 693
>ref|NM_001013375.1| Mus musculus WD repeat domain 50 (Wdr50), mRNA Length = 2613 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 tcagaagaagaagcagccag 178 |||||||||||||||||||| Sbjct: 496 tcagaagaagaagcagccag 515
>gb|AC126041.3| Mus musculus BAC clone RP24-268A23 from chromosome 18, complete sequence Length = 168391 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Plus Query: 149 aagaagaagatcagaagaagaagcagccagc 179 |||||||||| ||||||||||||||||||| Sbjct: 103355 aagaagaaga--agaagaagaagcagccagc 103383
>gb|AC158582.2| Mus musculus chromosome 7, clone RP24-173K12, complete sequence Length = 169636 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Plus Query: 141 aacaacaaaagaagaagatcagaagaagaag 171 |||||||||||||||||| ||||||||||| Sbjct: 33735 aacaacaaaagaagaaga--agaagaagaag 33763
>gb|AC115121.5| Mus musculus BAC clone RP23-204O13 from chromosome 19, complete sequence Length = 227154 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Minus Query: 141 aacaacaaaagaagaagatcagaagaagaag 171 |||||||||||||||||| ||||||||||| Sbjct: 140256 aacaacaaaagaagaaga--agaagaagaag 140228
>gb|AC006330.5| Homo sapiens BAC clone RP11-229D13 from 7, complete sequence Length = 96299 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 cagcttgaattttcttcttc 297 |||||||||||||||||||| Sbjct: 55547 cagcttgaattttcttcttc 55566
>gb|AC096226.12| Rattus norvegicus 18 BAC CH230-26M18 (Children's Hospital Oakland Research Institute) complete sequence Length = 232962 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 agaagaagaagcagccagca 180 |||||||||||||||||||| Sbjct: 174942 agaagaagaagcagccagca 174961
>gb|AC115302.4| Mus musculus BAC clone RP24-107D24 from chromosome 18, complete sequence Length = 162927 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gggggagaaaagaaagagaa 125 |||||||||||||||||||| Sbjct: 95330 gggggagaaaagaaagagaa 95311
>gb|AC134446.4| Mus musculus BAC clone RP24-173D10 from chromosome 17, complete sequence Length = 131657 Score = 40.1 bits (20), Expect = 3.9 Identities = 35/39 (89%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 149 aagaagaagatcagaagaagaagcagc--cagcaagaag 185 |||||||||| ||||||||||||||| |||||||||| Sbjct: 35305 aagaagaagaaaagaagaagaagcagcagcagcaagaag 35343
>gb|AC122252.4| Mus musculus BAC clone RP23-170E7 from chromosome 17, complete sequence Length = 219695 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 gggagaaaagaaagagaacaaaaa 131 |||||||||||||||||| ||||| Sbjct: 192336 gggagaaaagaaagagaagaaaaa 192313
>emb|AL132848.1|CEY47H10A Caenorhabditis elegans YAC Y47H10A, complete sequence Length = 31521 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gcttgaattttcttcttctt 299 |||||||||||||||||||| Sbjct: 5090 gcttgaattttcttcttctt 5109
>gb|AC122341.3| Mus musculus BAC clone RP23-355F8 from chromosome 15, complete sequence Length = 198612 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tagtaacctatccaaatcca 208 |||||||||||||||||||| Sbjct: 46161 tagtaacctatccaaatcca 46142
>gb|AC124173.2| Mus musculus BAC clone RP23-173I4 from 13, complete sequence Length = 207960 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Minus Query: 141 aacaacaaaagaagaagatcagaagaagaag 171 |||||||||||||||||| ||||||||||| Sbjct: 39268 aacaacaaaagaagaaga--agaagaagaag 39240
>gb|AC107765.9| Mus musculus chromosome 17, clone RP23-166P7, complete sequence Length = 229687 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Plus Query: 141 aacaacaaaagaagaagatcagaagaagaag 171 |||||||||||||||||| ||||||||||| Sbjct: 157924 aacaacaaaagaagaaga--agaagaagaag 157952
>gb|AC163721.4| Mus musculus BAC clone RP23-446B19 from chromosome 13, complete sequence Length = 184728 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Minus Query: 141 aacaacaaaagaagaagatcagaagaagaag 171 |||||||||||||||||| ||||||||||| Sbjct: 94766 aacaacaaaagaagaaga--agaagaagaag 94738
>gb|AC120779.24| Mus musculus strain C57BL/6J clone rp23-194d11 map 17, complete sequence Length = 235634 Score = 40.1 bits (20), Expect = 3.9 Identities = 35/39 (89%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 149 aagaagaagatcagaagaagaagcagc--cagcaagaag 185 |||||||||| ||||||||||||||| |||||||||| Sbjct: 28193 aagaagaagaaaagaagaagaagcagcagcagcaagaag 28231
>gb|AC118543.30| Mus musculus strain C57BL/6J clone rp23-254b17 map 17, complete sequence Length = 241570 Score = 40.1 bits (20), Expect = 3.9 Identities = 35/39 (89%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 149 aagaagaagatcagaagaagaagcagc--cagcaagaag 185 |||||||||| ||||||||||||||| |||||||||| Sbjct: 232597 aagaagaagaaaagaagaagaagcagcagcagcaagaag 232635
>gb|AC115910.6| Mus musculus, clone RP24-480O17, complete sequence Length = 257036 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 gggagaaaagaaagagaacaaaaa 131 ||||||||||||||| |||||||| Sbjct: 125156 gggagaaaagaaagaaaacaaaaa 125179
>gb|AC160638.6| Mus musculus BAC clone RP23-99K6 from chromosome 15, complete sequence Length = 218870 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tagtaacctatccaaatcca 208 |||||||||||||||||||| Sbjct: 173562 tagtaacctatccaaatcca 173543
>gb|AF543417.1| Zea mays major facilitator superfamily antiporter (mfs2) mRNA, complete cds Length = 1629 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 204 atccatgcacagcatgcacgcacgcagc 231 ||||||||| |||| ||||||||||||| Sbjct: 1404 atccatgcagagcacgcacgcacgcagc 1377
>emb|AL663078.8| Mouse DNA sequence from clone RP23-440P13 on chromosome 11 Contains the gene for a novel protein (6230425C22Rik) similar to Homo sapiens CGI-48 protein, the 5' end of the Mbtd1 gene for mbt domain containing 1 and one CpG island, complete sequence Length = 126275 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 tcagaagaagaagcagccag 178 |||||||||||||||||||| Sbjct: 90750 tcagaagaagaagcagccag 90731
>emb|AL031765.1|DMC22E5 Drosophila melanogaster cosmid clone 22E5 Length = 45672 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gatcagaagaagaagcagcc 176 |||||||||||||||||||| Sbjct: 27577 gatcagaagaagaagcagcc 27558
>gb|AC156617.8| Mus musculus chromosome 7, clone RP23-311N3, complete sequence Length = 203647 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 aagatcaaatgcagcagtag 27 |||||||||||||||||||| Sbjct: 109598 aagatcaaatgcagcagtag 109579
>gb|AC105445.3| Homo sapiens BAC clone RP11-350B19 from 4, complete sequence Length = 128907 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 caaaagaagaagatcagaagaaga 169 |||||||||| ||||||||||||| Sbjct: 10773 caaaagaagaggatcagaagaaga 10750
>gb|AC023310.4| Homo sapiens chromosome 15, clone RP11-336L20, complete sequence Length = 177355 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 atcagaagaagaagcagccagcaa 181 ||||||||||||||||| |||||| Sbjct: 28291 atcagaagaagaagcaggcagcaa 28268
>gb|AC105055.2| Drosophila melanogaster X BAC RP98-5N9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169618 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gatcagaagaagaagcagcc 176 |||||||||||||||||||| Sbjct: 168172 gatcagaagaagaagcagcc 168153
>ref|NM_135060.2| Drosophila melanogaster CG31918-PA (CG31918) mRNA, complete cds Length = 2268 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cagaagaagaagcagccagc 179 |||||||||||||||||||| Sbjct: 156 cagaagaagaagcagccagc 137
>ref|NM_130616.2| Drosophila melanogaster CG4290-RA (CG4290), mRNA Length = 4622 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gatcagaagaagaagcagcc 176 |||||||||||||||||||| Sbjct: 501 gatcagaagaagaagcagcc 520
>gb|AC113165.1| Homo sapiens chromosome 5 clone RP11-213E1, complete sequence Length = 140640 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 ctcccagcttgaattttctt 293 |||||||||||||||||||| Sbjct: 6124 ctcccagcttgaattttctt 6105
>gb|AC100757.2| Homo sapiens chromosome 15, clone RP11-566K19, complete sequence Length = 171987 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 atcagaagaagaagcagccagcaa 181 ||||||||||||||||| |||||| Sbjct: 12268 atcagaagaagaagcaggcagcaa 12245
>gb|AC104119.2| Homo sapiens chromosome 5 clone RP11-34D23, complete sequence Length = 168108 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ctcccagcttgaattttctt 293 |||||||||||||||||||| Sbjct: 44528 ctcccagcttgaattttctt 44547
>gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177724 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gatcagaagaagaagcagcc 176 |||||||||||||||||||| Sbjct: 34597 gatcagaagaagaagcagcc 34578
>dbj|AK154637.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630101N03 product:Weakly similar to hypothetical WD-repeat protein CGI-48 (Fragment), full insert sequence Length = 1845 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 tcagaagaagaagcagccag 178 |||||||||||||||||||| Sbjct: 436 tcagaagaagaagcagccag 455
>gb|AY061394.1| Drosophila melanogaster LD31822 full length cDNA Length = 2280 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cagaagaagaagcagccagc 179 |||||||||||||||||||| Sbjct: 156 cagaagaagaagcagccagc 137
>gb|AC024918.5| Homo sapiens chromosome 17, clone RP11-254J21, complete sequence Length = 172784 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gggggagaaaagaaagagaa 125 |||||||||||||||||||| Sbjct: 106649 gggggagaaaagaaagagaa 106630
>dbj|AK167248.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0045L22 product:similar to WD-repeat protein CGI-48 [Homo sapiens], full insert sequence Length = 2810 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 tcagaagaagaagcagccag 178 |||||||||||||||||||| Sbjct: 495 tcagaagaagaagcagccag 514
>gb|AC123664.15| Mus musculus chromosome 5, clone RP23-224P16, complete sequence Length = 226777 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Plus Query: 141 aacaacaaaagaagaagatcagaagaagaag 171 |||||||||||||||||| ||||||||||| Sbjct: 43318 aacaacaaaagaagaaga--agaagaagaag 43346
>gb|AC156637.2| Mus musculus BAC clone RP24-241I18 from chromosome 12, complete sequence Length = 156014 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 gggagaaaagaaagagaacaaaaa 131 ||||||||||||||| |||||||| Sbjct: 155291 gggagaaaagaaagaaaacaaaaa 155314
>emb|CR385182.1| Gallus gallus finished cDNA, clone ChEST752d1 Length = 768 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 agaagcagccagcaagaagt 186 |||||||||||||||||||| Sbjct: 432 agaagcagccagcaagaagt 413
>dbj|AK032265.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430513M13 product:weakly similar to HYPOTHETICAL WD-REPEAT PROTEIN CGI-48 [Homo sapiens], full insert sequence Length = 3110 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 tcagaagaagaagcagccag 178 |||||||||||||||||||| Sbjct: 440 tcagaagaagaagcagccag 459
>dbj|AK047938.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130022M03 product:unclassifiable, full insert sequence Length = 2590 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 gggagaaaagaaagagaacaaaaa 131 |||||||||||||||||| ||||| Sbjct: 1290 gggagaaaagaaagagaaaaaaaa 1313
>dbj|AK047371.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930053L08 product:unclassifiable, full insert sequence Length = 4028 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 gggagaaaagaaagagaacaaaaa 131 |||||||||||||||||| ||||| Sbjct: 2194 gggagaaaagaaagagaaaaaaaa 2217
>gb|AC006762.2| Caenorhabditis elegans cosmid Y42G9A, complete sequence Length = 30585 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gcttgaattttcttcttctt 299 |||||||||||||||||||| Sbjct: 27384 gcttgaattttcttcttctt 27403
>gb|AC008233.3|AC008233 Drosophila melanogaster, chromosome 2L, region 25C-25C, BAC clone BACR13M11, complete sequence Length = 162387 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cagaagaagaagcagccagc 179 |||||||||||||||||||| Sbjct: 114389 cagaagaagaagcagccagc 114408
>gb|AC154537.3| Mus musculus BAC clone RP23-451F20 from chromosome 13, complete sequence Length = 181229 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/31 (93%), Gaps = 2/31 (6%) Strand = Plus / Minus Query: 141 aacaacaaaagaagaagatcagaagaagaag 171 |||||||||||||||||| ||||||||||| Sbjct: 140383 aacaacaaaagaagaaga--agaagaagaag 140355
>gb|AF003627.3| Homo sapiens chromosome X multiple clones map q28, complete sequence Length = 184788 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gaaaagaaagagaacaaaaa 131 |||||||||||||||||||| Sbjct: 51584 gaaaagaaagagaacaaaaa 51603
>gb|AC134676.5| Homo sapiens chromosome 15, clone CTD-2290E14, complete sequence Length = 93881 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 atcagaagaagaagcagccagcaa 181 ||||||||||||||||| |||||| Sbjct: 55799 atcagaagaagaagcaggcagcaa 55776
>gb|AC136687.6| Homo sapiens chromosome 15, clone RP11-439M15, complete sequence Length = 180708 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 atcagaagaagaagcagccagcaa 181 ||||||||||||||||| |||||| Sbjct: 165708 atcagaagaagaagcaggcagcaa 165731
>gb|AC134393.6| Homo sapiens chromosome 15, clone CTC-803A3, complete sequence Length = 132353 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 atcagaagaagaagcagccagcaa 181 ||||||||||||||||| |||||| Sbjct: 55881 atcagaagaagaagcaggcagcaa 55858
>gb|AC131280.9| Homo sapiens chromosome 15, clone RP11-467L19, complete sequence Length = 194754 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 atcagaagaagaagcagccagcaa 181 ||||||||||||||||| |||||| Sbjct: 135301 atcagaagaagaagcaggcagcaa 135324
>gb|AC011372.7| Homo sapiens chromosome 5 clone CTB-108B20, complete sequence Length = 183330 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tcctcccagcttgaattttc 291 |||||||||||||||||||| Sbjct: 25831 tcctcccagcttgaattttc 25812
>gb|AC025715.3| Caenorhabditis elegans cosmid Y38F2AR, complete sequence Length = 97157 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 gcttgaattttcttcttctt 299 |||||||||||||||||||| Sbjct: 332 gcttgaattttcttcttctt 313
>emb|CT797314.2| Pan troglodytes chromosome X clone CH251-171B18 map Xq28, complete sequence Length = 178731 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gaaaagaaagagaacaaaaa 131 |||||||||||||||||||| Sbjct: 145774 gaaaagaaagagaacaaaaa 145793
>gb|AC156387.5| Mus musculus 10 BAC RP24-396H15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 230270 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 agccagcaagaagtagtagt 192 |||||||||||||||||||| Sbjct: 45590 agccagcaagaagtagtagt 45609
>gb|AE003608.5| Drosophila melanogaster chromosome 2L, section 17 of 83 of the complete sequence Length = 174887 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cagaagaagaagcagccagc 179 |||||||||||||||||||| Sbjct: 116662 cagaagaagaagcagccagc 116681
>gb|AE003422.2| Drosophila melanogaster chromosome X, section 6 of 74 of the complete sequence Length = 300933 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 gatcagaagaagaagcagcc 176 |||||||||||||||||||| Sbjct: 295149 gatcagaagaagaagcagcc 295130
>emb|CR974428.13| Mouse DNA sequence from clone RP23-114O7 on chromosome 12, complete sequence Length = 197806 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 gggagaaaagaaagagaacaaaaa 131 ||||||||||||||| |||||||| Sbjct: 197732 gggagaaaagaaagaaaacaaaaa 197709
>dbj|AP001782.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-109E10, complete sequence Length = 169313 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 aaagaagaagatcagaagaagaag 171 ||||||||||| |||||||||||| Sbjct: 64800 aaagaagaagaacagaagaagaag 64823
>gb|AC083892.19| Mus musculus strain C57BL/6J chromosome 1 clone rp23-116m12, complete sequence Length = 190588 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ggagaaaagaaagagaacaa 128 |||||||||||||||||||| Sbjct: 46288 ggagaaaagaaagagaacaa 46307
>emb|Z82260.1|CEC32H11 Caenorhabditis elegans Cosmid C32H11, complete sequence Length = 31654 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gcttgaattttcttcttctt 299 |||||||||||||||||||| Sbjct: 15590 gcttgaattttcttcttctt 15609
>dbj|AP003392.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-110I1, complete sequence Length = 178341 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 aaaagaaagagaacaaaaat 132 |||||||||||||||||||| Sbjct: 167628 aaaagaaagagaacaaaaat 167647
>gb|AC124593.4| Mus musculus BAC clone RP23-10D15 from 3, complete sequence Length = 187362 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aacaacaaaagaagaagatc 160 |||||||||||||||||||| Sbjct: 125695 aacaacaaaagaagaagatc 125714
>emb|AL611984.15| Mouse DNA sequence from clone RP23-416J8 on chromosome 4, complete sequence Length = 209904 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 agaaagagaacaaaaatgga 135 |||||||||||||||||||| Sbjct: 194710 agaaagagaacaaaaatgga 194729
>emb|AL844526.5| Mouse DNA sequence from clone RP23-201O18 on chromosome 2, complete sequence Length = 204398 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 agaaaagaaagagaacaaaa 130 |||||||||||||||||||| Sbjct: 156429 agaaaagaaagagaacaaaa 156448
>emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chromosome 4, complete sequence Length = 165700 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 gcttgaattttcttcttctt 299 |||||||||||||||||||| Sbjct: 94502 gcttgaattttcttcttctt 94521
>gb|AC158921.17| Mus musculus chromosome 15, clone RP23-120K5, complete sequence Length = 218949 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 gggagaaaagaaagagaacaaaaa 131 |||||||||||||||||| ||||| Sbjct: 1525 gggagaaaagaaagagaaaaaaaa 1502 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,808,680 Number of Sequences: 3902068 Number of extensions: 5808680 Number of successful extensions: 119649 Number of sequences better than 10.0: 111 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 119374 Number of HSP's gapped (non-prelim): 287 length of query: 299 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 277 effective length of database: 17,147,199,772 effective search space: 4749774336844 effective search space used: 4749774336844 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
