ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast01b01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009333.1| Triticum aestivum clone wlm4.pk0002.c12:fis, full insert mRNA sequence Length = 1604 Score = 359 bits (181), Expect = 5e-96 Identities = 277/309 (89%) Strand = Plus / Minus Query: 150 actcgtggcgttccccatcggattgccctcgaaccgtccgatccggtagtgctcgagctc 209 |||| ||||||||||| |||| ||||| |||||||| | ||| | | ||||| |||||| Sbjct: 1307 actcctggcgttccccgtcgggttgccgtcgaaccgccggatgctgaagtgccggagctc 1248 Query: 210 caagccggcctccgccgccgtccccgactggccgtccagcgccagctcggcgaggatctt 269 || |||||||||||| ||||||||||||| |||||||||||||| ||| || |||||| | Sbjct: 1247 cacgccggcctccgcggccgtccccgactcgccgtccagcgccatctccgccaggatcct 1188 Query: 270 ccccacggccgggcccatcttgaacccgtggccggagaacccggcgccgaccaccacgtc 329 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1187 ccccaccgccgggcccatcttgaacccgtggccggagaacccggcgccgaccaccacgtc 1128 Query: 330 cttcccgaactgctccccgcccaggaagtcgatcacgaagtcctcgtcgggcgtcatgca 389 | ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1127 cctcccgaactcctcgccgcccaggaagtcgatcacgaagtcctcgtcgggcgtcatgga 1068 Query: 390 gcacatgcacggctgccggagcaccggcccgccggcggtgtcgacgtggcccggcatgaa 449 | ||||||||| |||||||| |||||||||||| ||||| || ||| |||||||||| | Sbjct: 1067 gtacatgcacgcctgccggaccaccggcccgcccgcggtctccacgcggcccggcatcac 1008 Query: 450 ctcgtcgat 458 ||||||||| Sbjct: 1007 ctcgtcgat 999
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0019D02, complete sequence Length = 154692 Score = 268 bits (135), Expect = 1e-68 Identities = 218/245 (88%), Gaps = 3/245 (1%) Strand = Plus / Plus Query: 214 ccggcctccgccgccgtccccgactggccgtccagcgccagctcggcgaggatcttcccc 273 ||||||||||||||||||| | || |||||||| |||| ||||||||||||| |||| Sbjct: 26604 ccggcctccgccgccgtcctggcctcgccgtccaaggccatctcggcgaggatcctcccg 26663 Query: 274 acggccgggcccatcttgaacccgtggccggagaacccggcgccgaccaccacgtccttc 333 ||||| || ||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct: 26664 acggcgggccccatcttgaagccatggccggagaacccggcgccgaccacgacgtccttc 26723 Query: 334 ccgaactgctccccgcccaggaagtcgatcacgaagtcctcgtcgggcgtcatgcagcac 393 |||| |||||||||| | ||||||||| | ||||||||||||||| |||||| || || Sbjct: 26724 ccga---gctccccgccgacgaagtcgatgatgaagtcctcgtcgggggtcatggagtac 26780 Query: 394 atgcacggctgccggagcaccggcccgccggcggtgtcgacgtggcccggcatgaactcg 453 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct: 26781 atgcacggctgccggatgaccggcccgccggcggtgtcgacgtggcccggcatgacctcg 26840 Query: 454 tcgat 458 ||||| Sbjct: 26841 tcgat 26845
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 268 bits (135), Expect = 1e-68 Identities = 218/245 (88%), Gaps = 3/245 (1%) Strand = Plus / Plus Query: 214 ccggcctccgccgccgtccccgactggccgtccagcgccagctcggcgaggatcttcccc 273 ||||||||||||||||||| | || |||||||| |||| ||||||||||||| |||| Sbjct: 18981340 ccggcctccgccgccgtcctggcctcgccgtccaaggccatctcggcgaggatcctcccg 18981399 Query: 274 acggccgggcccatcttgaacccgtggccggagaacccggcgccgaccaccacgtccttc 333 ||||| || ||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct: 18981400 acggcgggccccatcttgaagccatggccggagaacccggcgccgaccacgacgtccttc 18981459 Query: 334 ccgaactgctccccgcccaggaagtcgatcacgaagtcctcgtcgggcgtcatgcagcac 393 |||| |||||||||| | ||||||||| | ||||||||||||||| |||||| || || Sbjct: 18981460 ccga---gctccccgccgacgaagtcgatgatgaagtcctcgtcgggggtcatggagtac 18981516 Query: 394 atgcacggctgccggagcaccggcccgccggcggtgtcgacgtggcccggcatgaactcg 453 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct: 18981517 atgcacggctgccggatgaccggcccgccggcggtgtcgacgtggcccggcatgacctcg 18981576 Query: 454 tcgat 458 ||||| Sbjct: 18981577 tcgat 18981581
>ref|NM_183735.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1245 Score = 248 bits (125), Expect = 1e-62 Identities = 247/287 (86%), Gaps = 3/287 (1%) Strand = Plus / Minus Query: 172 ttgccctcgaaccgtccgatccggtagtgctcgagctccaagccggcctccgccgccgtc 231 |||||||| ||||| | ||||| | ||||| |||||||| |||||||||||||||||| Sbjct: 1229 ttgccctcaaaccggctgatcctgaagtgccggagctccaccccggcctccgccgccgtc 1170 Query: 232 cccgactggccgtccagcgccagctcggcgaggatcttccccacggccgggcccatcttg 291 | || || ||||||| |||| |||||| | |||| ||||||| ||||| ||||||||| Sbjct: 1169 ctcgcctccccgtccatggccatctcggccaagatcctccccaccgccggccccatcttg 1110 Query: 292 aacccgtggccggagaacccggcgccgaccaccacgtccttcccgaactgctccccgccc 351 ||||||||||||||||||||||| |||||||||||||| | ||||| ||| ||||| Sbjct: 1109 aacccgtggccggagaacccggccccgaccaccacgtcgtcgccgaa---ctcgccgccg 1053 Query: 352 aggaagtcgatcacgaagtcctcgtcgggcgtcatgcagcacatgcacggctgccggagc 411 |||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||| Sbjct: 1052 aggaagtcgatcacgaagtccttgtccggcgtcatggagtacatgcacggctgccggacg 993 Query: 412 accggcccgccggcggtgtcgacgtggcccggcatgaactcgtcgat 458 |||||||||||||||| ||||||||| ||||||||||||| ||||| Sbjct: 992 accggcccgccggcggcctcgacgtggtccggcatgaactcctcgat 946
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 248 bits (125), Expect = 1e-62 Identities = 247/287 (86%), Gaps = 3/287 (1%) Strand = Plus / Plus Query: 172 ttgccctcgaaccgtccgatccggtagtgctcgagctccaagccggcctccgccgccgtc 231 |||||||| ||||| | ||||| | ||||| |||||||| |||||||||||||||||| Sbjct: 11927288 ttgccctcaaaccggctgatcctgaagtgccggagctccaccccggcctccgccgccgtc 11927347 Query: 232 cccgactggccgtccagcgccagctcggcgaggatcttccccacggccgggcccatcttg 291 | || || ||||||| |||| |||||| | |||| ||||||| ||||| ||||||||| Sbjct: 11927348 ctcgcctccccgtccatggccatctcggccaagatcctccccaccgccggccccatcttg 11927407 Query: 292 aacccgtggccggagaacccggcgccgaccaccacgtccttcccgaactgctccccgccc 351 ||||||||||||||||||||||| |||||||||||||| | ||||| ||| ||||| Sbjct: 11927408 aacccgtggccggagaacccggccccgaccaccacgtcgtcgccgaa---ctcgccgccg 11927464 Query: 352 aggaagtcgatcacgaagtcctcgtcgggcgtcatgcagcacatgcacggctgccggagc 411 |||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||| Sbjct: 11927465 aggaagtcgatcacgaagtccttgtccggcgtcatggagtacatgcacggctgccggacg 11927524 Query: 412 accggcccgccggcggtgtcgacgtggcccggcatgaactcgtcgat 458 |||||||||||||||| ||||||||| ||||||||||||| ||||| Sbjct: 11927525 accggcccgccggcggcctcgacgtggtccggcatgaactcctcgat 11927571 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 gccggcctccgccgccgtcc 232 |||||||||||||||||||| Sbjct: 37641549 gccggcctccgccgccgtcc 37641530 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccggagaacccggcgccg 318 |||||||||||||||||||| Sbjct: 24337461 ggccggagaacccggcgccg 24337480
>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1012D10 Length = 168267 Score = 248 bits (125), Expect = 1e-62 Identities = 247/287 (86%), Gaps = 3/287 (1%) Strand = Plus / Plus Query: 172 ttgccctcgaaccgtccgatccggtagtgctcgagctccaagccggcctccgccgccgtc 231 |||||||| ||||| | ||||| | ||||| |||||||| |||||||||||||||||| Sbjct: 139573 ttgccctcaaaccggctgatcctgaagtgccggagctccaccccggcctccgccgccgtc 139632 Query: 232 cccgactggccgtccagcgccagctcggcgaggatcttccccacggccgggcccatcttg 291 | || || ||||||| |||| |||||| | |||| ||||||| ||||| ||||||||| Sbjct: 139633 ctcgcctccccgtccatggccatctcggccaagatcctccccaccgccggccccatcttg 139692 Query: 292 aacccgtggccggagaacccggcgccgaccaccacgtccttcccgaactgctccccgccc 351 ||||||||||||||||||||||| |||||||||||||| | ||||| ||| ||||| Sbjct: 139693 aacccgtggccggagaacccggccccgaccaccacgtcgtcgccgaa---ctcgccgccg 139749 Query: 352 aggaagtcgatcacgaagtcctcgtcgggcgtcatgcagcacatgcacggctgccggagc 411 |||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||| Sbjct: 139750 aggaagtcgatcacgaagtccttgtccggcgtcatggagtacatgcacggctgccggacg 139809 Query: 412 accggcccgccggcggtgtcgacgtggcccggcatgaactcgtcgat 458 |||||||||||||||| ||||||||| ||||||||||||| ||||| Sbjct: 139810 accggcccgccggcggcctcgacgtggtccggcatgaactcctcgat 139856
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 174 bits (88), Expect = 2e-40 Identities = 213/254 (83%), Gaps = 3/254 (1%) Strand = Plus / Minus Query: 205 agctccaagccggcctccgccgccgtccccgactggccgtccagcgccagctcggcgagg 264 ||||||| |||||||||||||||||| | || |||||||| |||| |||||||||| Sbjct: 21905089 agctccactccggcctccgccgccgtcttggcctcgccgtccatggccatctcggcgagg 21905030 Query: 265 atcttccccacggccgggcccatcttgaacccgtggccggagaacccggcgccgaccacc 324 ||| |||| || || || ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 21905029 atcctcccgactgcaggtcccatcttgaagccatggccggagaacccggcgccgacaacc 21904970 Query: 325 acgtccttcccgaactgctccccgcccaggaagtcgatcacgaagtcctcgtcgggcgtc 384 || ||||| || |||| |||| || | ||||||||| | ||| ||||| || || ||| Sbjct: 21904969 acatcctttccaaact---ccccaccaacgaagtcgatgatgaaatcctcatcaggggtc 21904913 Query: 385 atgcagcacatgcacggctgccggagcaccggcccgccggcggtgtcgacgtggcccggc 444 ||| || ||||||||| |||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 21904912 atggagtacatgcacgactgccggatgaccggcccaccggcggtgtcgacgtggccgggc 21904853 Query: 445 atgaactcgtcgat 458 |||| ||||||||| Sbjct: 21904852 atgagctcgtcgat 21904839
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 174 bits (88), Expect = 2e-40 Identities = 213/254 (83%), Gaps = 3/254 (1%) Strand = Plus / Minus Query: 205 agctccaagccggcctccgccgccgtccccgactggccgtccagcgccagctcggcgagg 264 ||||||| |||||||||||||||||| | || |||||||| |||| |||||||||| Sbjct: 21833434 agctccactccggcctccgccgccgtcttggcctcgccgtccatggccatctcggcgagg 21833375 Query: 265 atcttccccacggccgggcccatcttgaacccgtggccggagaacccggcgccgaccacc 324 ||| |||| || || || ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 21833374 atcctcccgactgcaggtcccatcttgaagccatggccggagaacccggcgccgacaacc 21833315 Query: 325 acgtccttcccgaactgctccccgcccaggaagtcgatcacgaagtcctcgtcgggcgtc 384 || ||||| || |||| |||| || | ||||||||| | ||| ||||| || || ||| Sbjct: 21833314 acatcctttccaaact---ccccaccaacgaagtcgatgatgaaatcctcatcaggggtc 21833258 Query: 385 atgcagcacatgcacggctgccggagcaccggcccgccggcggtgtcgacgtggcccggc 444 ||| || ||||||||| |||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 21833257 atggagtacatgcacgactgccggatgaccggcccaccggcggtgtcgacgtggccgggc 21833198 Query: 445 atgaactcgtcgat 458 |||| ||||||||| Sbjct: 21833197 atgagctcgtcgat 21833184
>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138308 Score = 174 bits (88), Expect = 2e-40 Identities = 213/254 (83%), Gaps = 3/254 (1%) Strand = Plus / Minus Query: 205 agctccaagccggcctccgccgccgtccccgactggccgtccagcgccagctcggcgagg 264 ||||||| |||||||||||||||||| | || |||||||| |||| |||||||||| Sbjct: 11217 agctccactccggcctccgccgccgtcttggcctcgccgtccatggccatctcggcgagg 11158 Query: 265 atcttccccacggccgggcccatcttgaacccgtggccggagaacccggcgccgaccacc 324 ||| |||| || || || ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 11157 atcctcccgactgcaggtcccatcttgaagccatggccggagaacccggcgccgacaacc 11098 Query: 325 acgtccttcccgaactgctccccgcccaggaagtcgatcacgaagtcctcgtcgggcgtc 384 || ||||| || |||| |||| || | ||||||||| | ||| ||||| || || ||| Sbjct: 11097 acatcctttccaaact---ccccaccaacgaagtcgatgatgaaatcctcatcaggggtc 11041 Query: 385 atgcagcacatgcacggctgccggagcaccggcccgccggcggtgtcgacgtggcccggc 444 ||| || ||||||||| |||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 11040 atggagtacatgcacgactgccggatgaccggcccaccggcggtgtcgacgtggccgggc 10981 Query: 445 atgaactcgtcgat 458 |||| ||||||||| Sbjct: 10980 atgagctcgtcgat 10967
>emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb0087J18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121592 Score = 174 bits (88), Expect = 2e-40 Identities = 213/254 (83%), Gaps = 3/254 (1%) Strand = Plus / Plus Query: 205 agctccaagccggcctccgccgccgtccccgactggccgtccagcgccagctcggcgagg 264 ||||||| |||||||||||||||||| | || |||||||| |||| |||||||||| Sbjct: 18243 agctccactccggcctccgccgccgtcttggcctcgccgtccatggccatctcggcgagg 18302 Query: 265 atcttccccacggccgggcccatcttgaacccgtggccggagaacccggcgccgaccacc 324 ||| |||| || || || ||||||||||| || ||||||||||||||||||||||| ||| Sbjct: 18303 atcctcccgactgcaggtcccatcttgaagccatggccggagaacccggcgccgacaacc 18362 Query: 325 acgtccttcccgaactgctccccgcccaggaagtcgatcacgaagtcctcgtcgggcgtc 384 || ||||| || |||| |||| || | ||||||||| | ||| ||||| || || ||| Sbjct: 18363 acatcctttccaaact---ccccaccaacgaagtcgatgatgaaatcctcatcaggggtc 18419 Query: 385 atgcagcacatgcacggctgccggagcaccggcccgccggcggtgtcgacgtggcccggc 444 ||| || ||||||||| |||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 18420 atggagtacatgcacgactgccggatgaccggcccaccggcggtgtcgacgtggccgggc 18479 Query: 445 atgaactcgtcgat 458 |||| ||||||||| Sbjct: 18480 atgagctcgtcgat 18493
>gb|BT016536.1| Zea mays clone Contig369 mRNA sequence Length = 1567 Score = 168 bits (85), Expect = 1e-38 Identities = 198/235 (84%), Gaps = 3/235 (1%) Strand = Plus / Minus Query: 214 ccggcctccgccgccgtccccgactggccgtccagcgccagctcggcgaggatcttcccc 273 |||||||| |||||||| | || || ||||||| |||| |||||| |||||| |||| Sbjct: 1257 ccggcctcggccgccgtgctcgcctccccgtccaaggccatctcggccaggatcctcccg 1198 Query: 274 acggccgggcccatcttgaacccgtggccggagaacccggcgccgaccaccacgtccttc 333 |||||||||||||||||||| |||||||| |||||||| ||||||| || ||||||||| Sbjct: 1197 acggccgggcccatcttgaagccgtggccagagaaccccgcgccgatgacgacgtccttc 1138 Query: 334 ccgaactgctccccgcccaggaagtcgatcacgaagtcctcgtcgggcgtcatgcagcac 393 ||||| ||||||||| |||||||||| ||| |||| |||||||| |||| | || || Sbjct: 1137 ccgaa---ctccccgccgaggaagtcgacgacgtagtcgtcgtcgggggtcacggagtac 1081 Query: 394 atgcacggctgccggagcaccggcccgccggcggtgtcgacgtggcccggcatga 448 ||||| ||| |||| || |||||||||||||||||||||||||||||||||| Sbjct: 1080 atgcagcactggcggacgacgggcccgccggcggtgtcgacgtggcccggcatga 1026
>gb|AY106340.1| Zea mays PCO143515 mRNA sequence Length = 1558 Score = 168 bits (85), Expect = 1e-38 Identities = 198/235 (84%), Gaps = 3/235 (1%) Strand = Plus / Minus Query: 214 ccggcctccgccgccgtccccgactggccgtccagcgccagctcggcgaggatcttcccc 273 |||||||| |||||||| | || || ||||||| |||| |||||| |||||| |||| Sbjct: 1258 ccggcctcggccgccgtgctcgcctccccgtccaaggccatctcggccaggatcctcccg 1199 Query: 274 acggccgggcccatcttgaacccgtggccggagaacccggcgccgaccaccacgtccttc 333 |||||||||||||||||||| |||||||| |||||||| ||||||| || ||||||||| Sbjct: 1198 acggccgggcccatcttgaagccgtggccagagaaccccgcgccgatgacgacgtccttc 1139 Query: 334 ccgaactgctccccgcccaggaagtcgatcacgaagtcctcgtcgggcgtcatgcagcac 393 ||||| ||||||||| |||||||||| ||| |||| |||||||| |||| | || || Sbjct: 1138 ccgaa---ctccccgccgaggaagtcgacgacgtagtcgtcgtcgggggtcacggagtac 1082 Query: 394 atgcacggctgccggagcaccggcccgccggcggtgtcgacgtggcccggcatga 448 ||||| ||| |||| || |||||||||||||||||||||||||||||||||| Sbjct: 1081 atgcagcactggcggacgacgggcccgccggcggtgtcgacgtggcccggcatga 1027
>gb|BT018493.1| Zea mays clone EL01N0425H03.d mRNA sequence Length = 1475 Score = 103 bits (52), Expect = 5e-19 Identities = 109/128 (85%) Strand = Plus / Minus Query: 203 cgagctccaagccggcctccgccgccgtccccgactggccgtccagcgccagctcggcga 262 |||| |||| ||||||||||||||||||| | || ||| || | |||| ||| || | Sbjct: 1267 cgaggtccaggccggcctccgccgccgtctcggagccgccatcaatggccatctccgcca 1208 Query: 263 ggatcttccccacggccgggcccatcttgaacccgtggccggagaacccggcgccgacca 322 |||||||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||||| Sbjct: 1207 ggatcttccccacggcggggcccatcttgaagccgtggcccgagaagccggccccgacca 1148 Query: 323 ccacgtcc 330 |||||||| Sbjct: 1147 ccacgtcc 1140 Score = 83.8 bits (42), Expect = 5e-13 Identities = 87/102 (85%) Strand = Plus / Minus Query: 346 ccgcccaggaagtcgatcacgaagtcctcgtcgggcgtcatgcagcacatgcacggctgc 405 |||||||||||||| || |||||||| ||||||| |||||| |||| ||||||| |||| Sbjct: 1133 ccgcccaggaagtccatgacgaagtcggcgtcgggggtcatggagcagatgcacgactgc 1074 Query: 406 cggagcaccggcccgccggcggtgtcgacgtggcccggcatg 447 |||| |||||||| || |||| ||| |||||| |||||||| Sbjct: 1073 cggacgaccggccctcccgcggcgtccacgtggtccggcatg 1032
>gb|AY106880.1| Zea mays PCO134329 mRNA sequence Length = 699 Score = 97.6 bits (49), Expect = 3e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 262 aggatcttccccacggccgggcccatcttgaacccgtggccggagaacccggcgccgacc 321 ||||||||||||||||| |||||||||||||| |||||||| ||||| ||||| |||||| Sbjct: 392 aggatcttccccacggcggggcccatcttgaagccgtggcccgagaagccggccccgacc 333 Query: 322 accacgtcc 330 ||||||||| Sbjct: 332 accacgtcc 324 Score = 83.8 bits (42), Expect = 5e-13 Identities = 87/102 (85%) Strand = Plus / Minus Query: 346 ccgcccaggaagtcgatcacgaagtcctcgtcgggcgtcatgcagcacatgcacggctgc 405 |||||||||||||| || |||||||| ||||||| |||||| |||| ||||||| |||| Sbjct: 317 ccgcccaggaagtccatgacgaagtcggcgtcgggggtcatggagcagatgcacgactgc 258 Query: 406 cggagcaccggcccgccggcggtgtcgacgtggcccggcatg 447 |||| |||||||| || |||| ||| |||||| |||||||| Sbjct: 257 cggacgaccggccctcccgcggcgtccacgtggtccggcatg 216
>gb|AY108994.1| Zea mays PCO112303 mRNA sequence Length = 446 Score = 71.9 bits (36), Expect = 2e-09 Identities = 111/136 (81%) Strand = Plus / Plus Query: 203 cgagctccaagccggcctccgccgccgtccccgactggccgtccagcgccagctcggcga 262 |||| |||| |||||||||| | || |||| || || |||||| | |||| ||| || | Sbjct: 282 cgagttccacgccggcctccactgcagtcctcgcctcgccgtcgatggccatctcagcta 341 Query: 263 ggatcttccccacggccgggcccatcttgaacccgtggccggagaacccggcgccgacca 322 ||| | ||||||| ||||| ||||||||||| ||||| || |||||||| || ||||||| Sbjct: 342 ggagcctccccaccgccggccccatcttgaagccgtgcccagagaacccagccccgacca 401 Query: 323 ccacgtccttcccgaa 338 ||| ||||| |||||| Sbjct: 402 ccatgtcctccccgaa 417
>ref|XM_511370.1| PREDICTED: Pan troglodytes similar to sarcosine oxidase (LOC454541), mRNA Length = 1292 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 262 aggatcttccccacggccgggcccatcttgaacccgtggccggagaa 308 |||||||||||||| | ||| ||| |||||||||||| |||||||| Sbjct: 1159 aggatcttccccaccacaggggccagcttgaacccgtgcccggagaa 1113
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 ggcgccgaccaccacgtcctt 332 ||||||||||||||||||||| Sbjct: 152317 ggcgccgaccaccacgtcctt 152297
>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7 Length = 344615 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 cacagccacggtgaaggtgac 120 ||||||||||||||||||||| Sbjct: 281306 cacagccacggtgaaggtgac 281326
>gb|AF241171.1|AF241171 Pseudomonas aeruginosa pathogenicity island PAGI-1 gene, complete sequence Length = 51300 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 299 ggccggagaacccggcgccgaccac 323 |||||| |||||||||||||||||| Sbjct: 26839 ggccggcgaacccggcgccgaccac 26815
>dbj|AB055743.1| Thermococcus profundus soxb, pdha, pdhf, pdhx, pdhb genes for sarcosine oxidase B homolog, Dye-L-proDH alpha, probable ferredoxin, hypothetical protein, Dye-L-proDH beta, complete cds Length = 5000 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 272 ccacggccgggcccatcttgaacccgtggccggagaa 308 |||| |||||| ||||| |||| |||||||||||||| Sbjct: 1178 ccacagccggggccatcatgaagccgtggccggagaa 1142
>ref|NM_190775.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2262 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 gccggcctccgccgccgtcc 232 |||||||||||||||||||| Sbjct: 1272 gccggcctccgccgccgtcc 1253
>ref|NM_192770.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 501 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccggagaacccggcgccg 318 |||||||||||||||||||| Sbjct: 140 ggccggagaacccggcgccg 159
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 ccggagaacccggcgccgac 320 |||||||||||||||||||| Sbjct: 1569399 ccggagaacccggcgccgac 1569418
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gctgccggagcaccggcccg 420 |||||||||||||||||||| Sbjct: 1597818 gctgccggagcaccggcccg 1597799
>gb|AC125531.3| Mus musculus BAC clone RP23-396D12 from chromosome 10, complete sequence Length = 219818 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cagattattggcaaacacag 73 |||||||||||||||||||| Sbjct: 159978 cagattattggcaaacacag 159997
>gb|AC126558.4| Mus musculus BAC clone RP23-300A11 from 19, complete sequence Length = 159453 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 aaaaatatttctaccaatgataaa 24 |||||||||||||| ||||||||| Sbjct: 19147 aaaaatatttctacaaatgataaa 19124
>gb|AC164427.5| Mus musculus BAC clone RP23-189P17 from chromosome 19, complete sequence Length = 216510 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 aaaaatatttctaccaatgataaa 24 |||||||||||||| ||||||||| Sbjct: 87535 aaaaatatttctacaaatgataaa 87512
>emb|CR555307.1| Azoarcus sp. EbN1 plasmid 1 Length = 207355 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cgatcacgaagtcctcgtcg 378 |||||||||||||||||||| Sbjct: 177552 cgatcacgaagtcctcgtcg 177533
>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13 Length = 348264 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 ccggagaacccggcgccgac 320 |||||||||||||||||||| Sbjct: 186498 ccggagaacccggcgccgac 186517
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14 Length = 299450 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 ccggagaacccggcgccgac 320 |||||||||||||||||||| Sbjct: 251620 ccggagaacccggcgccgac 251639
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 gccagctcggcgaggatctt 269 |||||||||||||||||||| Sbjct: 168419 gccagctcggcgaggatctt 168438
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08, complete sequence Length = 148860 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 cctccgccgccgtccccgac 237 |||||||||||||||||||| Sbjct: 88386 cctccgccgccgtccccgac 88367
>gb|AC151845.7| Mus musculus BAC clone RP23-48N11 from chromosome 10, complete sequence Length = 204309 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cagattattggcaaacacag 73 |||||||||||||||||||| Sbjct: 171777 cagattattggcaaacacag 171758
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 cgccggcggtgtcgacgtggcccg 442 ||||| |||||||||||||||||| Sbjct: 3349524 cgccgtcggtgtcgacgtggcccg 3349501
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 cctccgccgccgtccccgac 237 |||||||||||||||||||| Sbjct: 31391578 cctccgccgccgtccccgac 31391559
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 cgtccagcgccagctcggcg 261 |||||||||||||||||||| Sbjct: 5324003 cgtccagcgccagctcggcg 5323984
>gb|AE004835.1| Pseudomonas aeruginosa PAO1, section 396 of 529 of the complete genome Length = 10876 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 299 ggccggagaacccggcgccgaccaccac 326 |||||| ||| ||||||||||||||||| Sbjct: 1143 ggccggtgaagccggcgccgaccaccac 1116
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ggccgtccagcgccagctcg 258 |||||||||||||||||||| Sbjct: 2158484 ggccgtccagcgccagctcg 2158465
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 gccggcctccgccgccgtcc 232 |||||||||||||||||||| Sbjct: 102023 gccggcctccgccgccgtcc 102004
>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E01 Length = 166753 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccggagaacccggcgccg 318 |||||||||||||||||||| Sbjct: 83365 ggccggagaacccggcgccg 83384
>dbj|AK062537.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-F05, full insert sequence Length = 754 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ggccggagaacccggcgccg 318 |||||||||||||||||||| Sbjct: 137 ggccggagaacccggcgccg 156
>emb|AL442111.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818E11, complete sequence Length = 88090 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 cctccgccgccgtccccgac 237 |||||||||||||||||||| Sbjct: 57686 cctccgccgccgtccccgac 57667
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 cctccgccgccgtccccgac 237 |||||||||||||||||||| Sbjct: 11429 cctccgccgccgtccccgac 11410
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 cgccggcggtgtcgacgtgg 438 |||||||||||||||||||| Sbjct: 464620 cgccggcggtgtcgacgtgg 464601
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ccggcgccgaccaccacgtc 329 |||||||||||||||||||| Sbjct: 447718 ccggcgccgaccaccacgtc 447737 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,060,604 Number of Sequences: 3902068 Number of extensions: 3060604 Number of successful extensions: 64012 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62746 Number of HSP's gapped (non-prelim): 1251 length of query: 458 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 436 effective length of database: 17,147,199,772 effective search space: 7476179100592 effective search space used: 7476179100592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
