ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast01a05 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 59.7 bits (143), Expect = 2e-09 Identities = 27/35 (77%), Positives = 29/35 (82%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GPA PYM+LYPNTSDH G A GL A+GIPNSISI Sbjct: 828 GPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 57.4 bits (137), Expect = 8e-09 Identities = 25/35 (71%), Positives = 30/35 (85%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GPAN PY +++PNTSD+ G AEG+ ARGIPNSISI Sbjct: 829 GPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 57.0 bits (136), Expect = 1e-08 Identities = 26/35 (74%), Positives = 29/35 (82%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GPA PYM+LYPNTSD TG A G+ A+GIPNSISI Sbjct: 832 GPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 55.5 bits (132), Expect = 3e-08 Identities = 26/35 (74%), Positives = 27/35 (77%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GP N PY +LYPNTSD G A GL ARGIPNSISI Sbjct: 836 GPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 48.5 bits (114), Expect = 4e-06 Identities = 24/36 (66%), Positives = 27/36 (75%), Gaps = 1/36 (2%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQ-AEGLPARGIPNSISI 261 GP PYM+LYPNTSD T + +GL A GIPNSISI Sbjct: 842 GPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 38.9 bits (89), Expect = 0.003 Identities = 20/35 (57%), Positives = 23/35 (65%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GPA PY +LYP++ EGL RGIPNSISI Sbjct: 825 GPAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 38.1 bits (87), Expect = 0.005 Identities = 19/35 (54%), Positives = 22/35 (62%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GP PY +LYP++ EGL RGIPNSISI Sbjct: 838 GPVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/36 (47%), Positives = 23/36 (63%) Frame = -3 Query: 368 TGPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 TGP N+PY +L+P + GL +GIPNS+SI Sbjct: 831 TGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 37.4 bits (85), Expect = 0.009 Identities = 19/35 (54%), Positives = 22/35 (62%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GP PY +L+PN+ EGL RGIPNSISI Sbjct: 838 GPVQLPYTLLHPNS-------EGLTCRGIPNSISI 865
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 37.4 bits (85), Expect = 0.009 Identities = 19/35 (54%), Positives = 22/35 (62%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GP PY +LYP++ EGL RGIPNSISI Sbjct: 833 GPVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 37.0 bits (84), Expect = 0.012 Identities = 17/36 (47%), Positives = 23/36 (63%) Frame = -3 Query: 368 TGPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 +GP N PY +L+P + EGL +GIPNS+SI Sbjct: 830 SGPVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 37.0 bits (84), Expect = 0.012 Identities = 20/35 (57%), Positives = 20/35 (57%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GP PY VL P D EGL RGIPNSISI Sbjct: 833 GPVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 37.0 bits (84), Expect = 0.012 Identities = 19/35 (54%), Positives = 22/35 (62%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GP PY +LYP++ EGL RGIPNSISI Sbjct: 811 GPVQLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 35.8 bits (81), Expect = 0.026 Identities = 16/36 (44%), Positives = 23/36 (63%) Frame = -3 Query: 368 TGPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 +GP N+PY +L+P + GL +GIPNS+SI Sbjct: 832 SGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 35.0 bits (79), Expect = 0.045 Identities = 18/35 (51%), Positives = 22/35 (62%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GP PY +L+P++ EGL RGIPNSISI Sbjct: 836 GPVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 34.3 bits (77), Expect = 0.076 Identities = 18/35 (51%), Positives = 21/35 (60%) Frame = -3 Query: 365 GPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 GP PY +L P++ EGL RGIPNSISI Sbjct: 829 GPVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 33.9 bits (76), Expect = 0.099 Identities = 18/36 (50%), Positives = 20/36 (55%) Frame = -3 Query: 368 TGPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 TGP PY +L H EGL +GIPNSISI Sbjct: 835 TGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 30.8 bits (68), Expect = 0.84 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 368 TGPANSPYMVLYPNTSDHTGQAEGLPARGIPNSISI 261 TG PY +L+P++ G+ RGIPNS+SI Sbjct: 830 TGLVKMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -3 Query: 368 TGPANSPYMVLYPNTSDHTGQAEGLPARGI 279 TGPA PY +LYP++ EGL RGI Sbjct: 718 TGPAKMPYTLLYPSSE------EGLTFRGI 741
>MA2B1_FELCA (O46432) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) Length = 1007 Score = 29.6 bits (65), Expect = 1.9 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = -2 Query: 339 ALPKHLRPHGTGRGAPRQGHPEQHIHLI*ARPSSRPHAFVLSLLAYPGA 193 A P +R G GRGA R G + + P P +F+L LLA PGA Sbjct: 5 ARPLGVRAGGGGRGAARPGTSSRALP-----PPLPPLSFLLLLLAAPGA 48
>CHK1_HUMAN (O14757) Serine/threonine-protein kinase Chk1 (EC 2.7.11.1)| Length = 476 Score = 28.9 bits (63), Expect = 3.2 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -2 Query: 123 PDGFDRHAEAQLSWLPVNASSCAEKI 46 P GF +H ++ L + PVN++S E + Sbjct: 287 PSGFSKHIQSNLDFSPVNSASSEENV 312
>ITR1_ASCSU (P19398) Trypsin inhibitor (ATI)| Length = 62 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Frame = +2 Query: 260 KWICCSGCPWRGAPRPVPCGRRCL-GRAPCMGS 355 +W C GC A + VPC R C R C+ S Sbjct: 11 QWTKCGGCEGTCAQKIVPCTRECKPPRCECIAS 43
>GPTC2_HUMAN (Q9NW75) G patch domain-containing protein 2| Length = 528 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +3 Query: 198 RGKQARIAQKHEVSTTDVLKSNGYAVRDAPGGEPLGLSR 314 RG QAR+++ H +S+ ++ KS G P P+G R Sbjct: 339 RGFQARLSRLHGMSSKNIKKSGGTPTSMVPIPGPVGNKR 377
>MDCG_PSEPU (Q9Z448) Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)| (Holo-ACP synthase) Length = 204 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = +1 Query: 265 DMLFGMPLAGSPSACPVWS 321 D+L+GMP++G P+ P W+ Sbjct: 8 DLLWGMPVSGLPTDAPQWA 26
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%) Frame = -2 Query: 369 HRAGQLPIHGALPKHLRPHGTGRG---APRQGHPEQHIHL 259 HR LP H P+H PH P HP H H+ Sbjct: 386 HRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQHPPPHQHI 425
>ACV1C_HUMAN (Q8NER5) Activin receptor type 1C precursor (EC 2.7.11.30)| (ACTR-IC) (Activin receptor-like kinase 7) (ALK-7) Length = 493 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -3 Query: 242 RRDLMLLCYPCLLTPELACVC-VCDKKLCRCMNN*GNKGAC 123 R+ L+LL L+P L CVC +CD C +GAC Sbjct: 10 RQALLLLAAAAELSPGLKCVCLLCDSSNFTCQ----TEGAC 46
>SEZ6L_HUMAN (Q9BYH1) Seizure 6-like protein precursor| Length = 1024 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 336 LPKHLRPHGTG-RGAPRQGHPEQHIHLI*ARPSSRPHAFVLSLLAYPGAS 190 L +L P G RG+P + HPE+ + + A PSS A VL L G + Sbjct: 42 LGPYLLPSGAPERGSPGKEHPEERV--VTAPPSSSQSAEVLGELVLDGTA 89
>SEM5B_MOUSE (Q60519) Semaphorin-5B precursor (Semaphorin G) (Sema G)| Length = 1093 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 11/41 (26%) Frame = +1 Query: 232 RSRRRTCSNQMDMLFGMPLAG--------SPSACPV---WS 321 R R+RTC+N G+P G +P ACPV WS Sbjct: 816 RVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWS 856
>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor| Length = 1093 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 11/41 (26%) Frame = +1 Query: 232 RSRRRTCSNQMDMLFGMPLAG--------SPSACPV---WS 321 R R+RTC+N G+P G +P ACPV WS Sbjct: 816 RVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWS 856
>PRTN3_MOUSE (Q61096) Myeloblastin precursor (EC 3.4.21.76) (Proteinase 3)| (PR-3) Length = 254 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 252 ARPSSRPHAFVLSLLAYPGASLC 184 ARP SRP+ L L +PG+ C Sbjct: 36 ARPHSRPYVASLQLSRFPGSHFC 58
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like| protein ST- Length = 1019 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -2 Query: 330 KHLRPHGTGRGAPRQGHPEQHIHLI*ARPSSRPHAFVLSLLAYP 199 +H RP G G PR+GHP + ++RPH F + L P Sbjct: 821 RHQRP---GPGRPRRGHP-----FLPQGSTTRPHQFSVQLHPLP 856 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,967,652 Number of Sequences: 219361 Number of extensions: 1217717 Number of successful extensions: 3076 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2986 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3061 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
