ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast01a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 289 3e-75
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 137 3e-29
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 2e-08
4emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 68 2e-08
5gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 68 2e-08
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
7dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
8ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 66 9e-08
9gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full... 58 2e-05
10gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRN... 52 0.001
11gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 52 0.001
12gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence 50 0.005
13gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 ge... 50 0.005
14gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 ge... 50 0.005
15gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 ge... 50 0.005
16gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 ge... 50 0.005
17gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 ge... 50 0.005
18gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 ge... 50 0.005
19gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 ge... 50 0.005
20gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 ge... 50 0.005
21gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 ge... 50 0.005
22gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 ge... 50 0.005
23gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 ge... 50 0.005
24gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 ge... 50 0.005
25gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 ge... 50 0.005
26gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 geno... 50 0.005
27gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.080
28dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.080
29ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.32
30gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 44 0.32
31ref|XM_863665.1| PREDICTED: Canis familiaris hypothetical protei... 44 0.32
32gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 44 0.32
33emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 1.2
34emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2... 42 1.2
35emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 1.2
36ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.9 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  289 bits (146), Expect = 3e-75
 Identities = 173/182 (95%)
 Strand = Plus / Minus

                                                                        
Query: 189  agctagctccggggtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 248
            |||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                                        
Query: 249  gtgctcaaatcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctg 308
            ||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 2608

                                                                        
Query: 309  tcccgtgtggtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccggt 368
            |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct: 2607 tcccgtgtggtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggt 2548

              
Query: 369  gc 370
            ||
Sbjct: 2547 gc 2546



 Score =  242 bits (122), Expect = 7e-61
 Identities = 141/147 (95%), Gaps = 4/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 24   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 84   agctgagctgagcttccgcatgccgatcaaacccgtcgggcacgcaccc----ttattgc 139
            ||||||||||||||||||||||||||||| |||||||| ||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                       
Query: 140  cttaattattcatgcaccggcacaact 166
            |||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaact 2750
to top
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA
           sequence
          Length = 1129

 Score =  137 bits (69), Expect = 3e-29
 Identities = 99/109 (90%)
 Strand = Plus / Minus

                                                                       
Query: 262 atggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgtggtcg 321
           ||||| |||||||| |||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 902 atggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtggtcg 843

                                                            
Query: 322 gaggtgtttgggtagagcaccatgtatggggagttggccggcccggtgc 370
           |||||||| |||||||||| |||||| ||| | ||||||||||||||||
Sbjct: 842 gaggtgttggggtagagcagcatgtaggggaacttggccggcccggtgc 794



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 17   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 66
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                            
Query: 257      atcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgt 316
                |||| ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || 
Sbjct: 30026450 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 30026391

                                                                  
Query: 317      ggtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
                |||||||||||||||||||||||| | |||| ||| | |||| |||||||
Sbjct: 30026390 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 30026341



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 318      gtcggaggtgtttgggtagagcaccatgtatggg 351
                |||||||||||| ||||| |||| ||||||||||
Sbjct: 27803047 gtcggaggtgttggggtaaagcagcatgtatggg 27803014
to top
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                        
Query: 257  atcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgt 316
            |||| ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || 
Sbjct: 2696 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 2637

                                                              
Query: 317  ggtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
            |||||||||||||||||||||||| | |||| ||| | |||| |||||||
Sbjct: 2636 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 2587
to top
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                         
Query: 257   atcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgt 316
             |||| ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || 
Sbjct: 81301 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 81360

                                                               
Query: 317   ggtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
             |||||||||||||||||||||||| | |||| ||| | |||| |||||||
Sbjct: 81361 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 81410
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                            
Query: 257      atcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgt 316
                |||| ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || 
Sbjct: 30117872 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 30117813

                                                                  
Query: 317      ggtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
                |||||||||||||||||||||||| | |||| ||| | |||| |||||||
Sbjct: 30117812 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 30117763



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 318      gtcggaggtgtttgggtagagcaccatgtatggg 351
                |||||||||||| ||||| |||| ||||||||||
Sbjct: 27894371 gtcggaggtgttggggtaaagcagcatgtatggg 27894338
to top
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 91/110 (82%)
 Strand = Plus / Minus

                                                                        
Query: 257  atcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgt 316
            |||| ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || 
Sbjct: 2729 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 2670

                                                              
Query: 317  ggtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
            |||||||||||||||||||||||| | |||| ||| | |||| |||||||
Sbjct: 2669 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 2620
to top
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                        
Query: 262  atggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgtggtcg 321
            ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || |||||
Sbjct: 2609 atggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggtcg 2550

                                                         
Query: 322  gaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
            ||||||||||||||||||| | |||| ||| | |||| |||||||
Sbjct: 2549 gaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 2505
to top
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA
           sequence
          Length = 1020

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 262 atggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgtggtcg 321
           ||||| |||||||| ||||||||| | |||| ||||||  ||||    ||| |||| |||
Sbjct: 749 atggagatgctgttggggatgcccttagcggtgagcccggcggcggcgcccttgtgatcg 690

                                                    
Query: 322 gaggtgtttgggtagagcaccatgtatggggagttggccgg 362
           |||||||| |||||||||| |||||| ||| | ||||||||
Sbjct: 689 gaggtgttggggtagagcaacatgtaggggaacttggccgg 649
to top
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds
          Length = 1331

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 314  tgtggtcggaggtgtttgggtagagcaccatgta 347
            |||||||||||||||| |||||||||| ||||||
Sbjct: 1030 tgtggtcggaggtgttggggtagagcagcatgta 997
to top
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 314  tgtggtcggaggtgtttgggtagagcaccatgta 347
            |||||||||||||||| |||||||||| ||||||
Sbjct: 2601 tgtggtcggaggtgttggggtagagcagcatgta 2568
to top
>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence
          Length = 810

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 736 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 688
to top
>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence
          Length = 805

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 318 gtcggaggtgtttgggtagagcaccatgtatggggagttggccggcccg 366
           |||||||||||| |||||||||| | |||| ||| | ||||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccg 683
to top
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 131    ccttattgccttaattattcatg 153
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 131   ccttattgccttaattattcatg 153
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 131      ccttattgccttaattattcatg 153
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 131      ccttattgccttaattattcatg 153
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060
to top
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2601

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 318  gtcggaggtgtttgggtagagcaccatgtatggg 351
            |||||||||||| ||||| |||| ||||||||||
Sbjct: 2541 gtcggaggtgttggggtaaagcagcatgtatggg 2508
to top
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 318   gtcggaggtgtttgggtagagcaccatgtatggg 351
             |||||||||||| ||||| |||| ||||||||||
Sbjct: 47177 gtcggaggtgttggggtaaagcagcatgtatggg 47144
to top
>ref|XM_863665.1| PREDICTED: Canis familiaris hypothetical protein LOC612566
           (LOC612566), mRNA
          Length = 1026

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 276 cgggatgcccctggcggggagcccct 301
           |||||||| |||||||||||||||||
Sbjct: 74  cgggatgcacctggcggggagcccct 99
to top
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 318   gtcggaggtgtttgggtagagcaccatgtatggg 351
             |||||||||||| ||||| |||| ||||||||||
Sbjct: 10846 gtcggaggtgttggggtaaagcagcatgtatggg 10879
to top
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    aaacaagggattttttctgca 58
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585
to top
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene)
          Length = 2967

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 256  aatcaaatggatatgctgttcgggatgcc 284
            ||||||||||| |||||||| ||||||||
Sbjct: 2776 aatcaaatggagatgctgttggggatgcc 2748
to top
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 35    gcaaaacaagggattttttct 55
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614
to top
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    ggagggaacatcacaccatc 20
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,316,669
Number of Sequences: 3902068
Number of extensions: 2316669
Number of successful extensions: 44711
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44590
Number of HSP's gapped (non-prelim): 120
length of query: 370
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 348
effective length of database: 17,147,199,772
effective search space: 5967225520656
effective search space used: 5967225520656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top