ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet94g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE010319.1| Methanopyrus kandleri AV19 section 18 of 157 of t... 38 6.5
2gb|AY918904.1| Heliconius erato ultraviolet-sensitive visual pig... 38 6.5
3emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 38 6.5
4emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment ... 38 6.5
5gb|AC108073.3| Homo sapiens BAC clone RP11-713C19 from 4, comple... 38 6.5
6gb|AY298966.1|AY298971S3 Gallus gallus chromo-helicase-DNA bindi... 38 6.5

>gb|AE010319.1| Methanopyrus kandleri AV19 section 18 of 157 of the complete genome
          Length = 10699

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 54   ggaacagtactaccgcagg 72
            |||||||||||||||||||
Sbjct: 6755 ggaacagtactaccgcagg 6737



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>gb|AY918904.1| Heliconius erato ultraviolet-sensitive visual pigment (UVRh1) mRNA,
            complete cds
          Length = 1378

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   ctaccgcagggatcatggt 81
            |||||||||||||||||||
Sbjct: 1015 ctaccgcagggatcatggt 997



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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 91     acatcctccccctttatttctgg 113
              ||||||||||||||||| |||||
Sbjct: 641836 acatcctccccctttatatctgg 641814



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>emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment 8/24
          Length = 307050

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 106    atttctggttgggacggtt 124
              |||||||||||||||||||
Sbjct: 276841 atttctggttgggacggtt 276823



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>gb|AC108073.3| Homo sapiens BAC clone RP11-713C19 from 4, complete sequence
          Length = 225639

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 97     tccccctttatttctggtt 115
              |||||||||||||||||||
Sbjct: 200364 tccccctttatttctggtt 200346



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>gb|AY298966.1|AY298971S3 Gallus gallus chromo-helicase-DNA binding 1 gene, intron 11
          Length = 645

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 94  tcctccccctttatttctg 112
           |||||||||||||||||||
Sbjct: 624 tcctccccctttatttctg 642


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 824,815
Number of Sequences: 3902068
Number of extensions: 824815
Number of successful extensions: 47623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47607
Number of HSP's gapped (non-prelim): 16
length of query: 138
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 117
effective length of database: 17,151,101,840
effective search space: 2006678915280
effective search space used: 2006678915280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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