>PCD12_HUMAN (Q9NPG4) Protocadherin-12 precursor (Vascular cadherin-2) (Vascular|
           endothelial cadherin-2) (VE-cadherin-2) (VE-cad-2)
          Length = 1184

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 22  FRSLCRLTQRDSRSETIREGESTH 93
           F S+CR  ++D+R+   RE EST+
Sbjct: 736 FMSICRTEKKDNRAYNCREAESTY 759

>AGLA_RHIME (Q9Z3R8) Probable alpha-glucosidase (EC 3.2.1.20)|
          Length = 551

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +3

Query: 60  IGNNQRG----GEYT*RGSLNQSTVPFFFLNPDRLYEQ 161
           +G++QRG    GEYT  G        F FL PDRL  Q
Sbjct: 282 VGDSQRGLEIAGEYTSGGDKVHMCYAFEFLAPDRLTPQ 319

>LIPB_BRUSU (Q8FW72) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier|
           protein]-protein-N-lipoyltransferase) (Lipoate-protein
           ligase B)
          Length = 267

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 39  INSERFPIGNNQRGGEYT*RG 101
           +  +RFP+ N  RGGEYT  G
Sbjct: 104 LTPDRFPVFNTGRGGEYTYHG 124

>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2|
          Length = 1484

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 339 RALPDGV-LRPHGQAQPRPHGPAPQVA 262
           R  P GV   PH  A PR  GP PQVA
Sbjct: 914 RVCPPGVPYHPHQPAHPRLPGPFPQVA 940

>M3K10_HUMAN (Q02779) Mitogen-activated protein kinase kinase kinase 10 (EC|
           2.7.11.25) (Mixed lineage kinase 2) (Protein kinase MST)
          Length = 954

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 351 RRRRRALPDGVLRPHGQAQPRPHGPAPQ 268
           R  RR   DG L   G  +P  HGP P+
Sbjct: 823 RGHRRTPSDGALGQRGPPEPAGHGPGPR 850

>LIPB_BRUME (Q8YC54) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier|
           protein]-protein-N-lipoyltransferase) (Lipoate-protein
           ligase B)
          Length = 264

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 39  INSERFPIGNNQRGGEYT*RG 101
           +  +RFP+ N  RGGEYT  G
Sbjct: 101 LTPDRFPVFNTGRGGEYTYHG 121

>PURL_HALMA (Q5V2D3) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 720

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 261 EPPAGLVHEVGAEPDHEDAELHLGERAVAVE 353
           E   GL    GA+P+  DA  + G RAVA+E
Sbjct: 433 EAGTGLAFSAGADPNWTDAAPYEGARAVALE 463

>TSSC1_RAT (Q5PPK9) Protein TSSC1|
          Length = 386

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 232 NCEAWATASSSHLRGWSMRS 291
           NC   ATAS + LRGW  RS
Sbjct: 197 NCTQVATASDTTLRGWDTRS 216

>TSCC1_MOUSE (Q8K0G5) Protein TSSC1|
          Length = 386

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 232 NCEAWATASSSHLRGWSMRS 291
           NC   ATAS + LRGW  RS
Sbjct: 197 NCTQVATASDTTLRGWDTRS 216

>YCFM_ECOLI (P0AB38) Hypothetical protein ycfM|
          Length = 213

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -1

Query: 345 RRRALPDGVLRPHGQAQPRPHGPAPQVAXXXXRPGLAIPLHHLDSTAP 202
           +R   P   ++P  +    P  P P V      P    P+ H D TAP
Sbjct: 23  QREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAP 70

>YCFM_ECO57 (P0AB39) Hypothetical protein ycfM|
          Length = 213

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -1

Query: 345 RRRALPDGVLRPHGQAQPRPHGPAPQVAXXXXRPGLAIPLHHLDSTAP 202
           +R   P   ++P  +    P  P P V      P    P+ H D TAP
Sbjct: 23  QREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAP 70

>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 336 ALPDGVLRPHGQAQPRPHGPAPQVAXXXXRPGLAIPLHHLDSTAP 202
           +LP  +LRP G+  PR  G  P        P    P+H    + P
Sbjct: 177 SLPTPLLRPSGRPSPRDRGTLPD--RFVITPRRRYPIHQTQYSCP 219

>TSSC1_BRARE (Q5XJP1) Protein TSSC1|
          Length = 387

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 232 NCEAWATASSSHLRGWSMRS 291
           NC   ATA+ + +RGW +RS
Sbjct: 197 NCTQLATANDTAIRGWDLRS 216


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,084,009
Number of Sequences: 219361
Number of extensions: 676558
Number of successful extensions: 2138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2138
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)