ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet94e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185465.2| Oryza sativa (japonica cultivar-group), mRNA 94 3e-16
2gb|AY225189.1| Oryza sativa (indica cultivar-group) zinc finger ... 94 3e-16
3gb|AY207044.1| Oryza sativa (indica cultivar-group) zinc-finger ... 94 3e-16
4dbj|AK104425.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
5dbj|AK068302.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 9e-10
7dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic D... 72 9e-10
8gb|AY112568.1| Zea mays CL32837_1 mRNA sequence 46 0.054
9gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, com... 42 0.85
10gb|AF000197.2| Caenorhabditis elegans cosmid T21G5, complete seq... 42 0.85
11emb|BX649599.7| Zebrafish DNA sequence from clone CH211-224B1 in... 42 0.85
12gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, com... 42 0.85
13gb|AC005368.1| Homo sapiens chromosome 5, BAC clone 194j18 (LBNL... 40 3.3
14gb|AC083915.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 3.3
15gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 3.3
16gb|AC102805.6| Mus musculus chromosome 13, clone RP23-74G2, comp... 40 3.3
17gb|AC108103.2| Homo sapiens chromosome 5 clone RP11-197O8, compl... 40 3.3
18gb|AC008781.7| Homo sapiens chromosome 5 clone CTD-2024I7, compl... 40 3.3
19gb|AC024565.6| Homo sapiens chromosome 5 clone CTD-2104P22, comp... 40 3.3
20emb|BX324157.4| Zebrafish DNA sequence from clone DKEY-15N1 in l... 40 3.3
21gb|AC091978.3| Homo sapiens chromosome 5 clone RP11-531A21, comp... 40 3.3
22emb|BX537308.18| Zebrafish DNA sequence from clone DKEY-231A18 i... 40 3.3 
>ref|NM_185465.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1058

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                      
Query: 148 taggagggtccaaacacttcatatttgcaaactgggcaggtcttgtcgatcttgagcca 206
           ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 914 taggaaggtccaaacacttcatatttgcaaactgggcaggccttgtcaatcttgagcca 856
to top
>gb|AY225189.1| Oryza sativa (indica cultivar-group) zinc finger protein mRNA,
           complete cds
          Length = 855

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                      
Query: 148 taggagggtccaaacacttcatatttgcaaactgggcaggtcttgtcgatcttgagcca 206
           ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 817 taggaaggtccaaacacttcatatttgcaaactgggcaggccttgtcaatcttgagcca 759
to top
>gb|AY207044.1| Oryza sativa (indica cultivar-group) zinc-finger protein mRNA,
           complete cds
          Length = 855

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                      
Query: 148 taggagggtccaaacacttcatatttgcaaactgggcaggtcttgtcgatcttgagcca 206
           ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 817 taggaaggtccaaacacttcatatttgcaaactgggcaggccttgtcaatcttgagcca 759
to top
>dbj|AK104425.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-F10, full
           insert sequence
          Length = 1068

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                      
Query: 148 taggagggtccaaacacttcatatttgcaaactgggcaggtcttgtcgatcttgagcca 206
           ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 910 taggaaggtccaaacacttcatatttgcaaactgggcaggccttgtcaatcttgagcca 852
to top
>dbj|AK068302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013144A04, full
           insert sequence
          Length = 1058

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                      
Query: 148 taggagggtccaaacacttcatatttgcaaactgggcaggtcttgtcgatcttgagcca 206
           ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 914 taggaaggtccaaacacttcatatttgcaaactgggcaggccttgtcaatcttgagcca 856
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                       
Query: 148     taggagggtccaaacacttcatatttgcaaactgggcagg 187
               ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1384825 taggaaggtccaaacacttcatatttgcaaactgggcagg 1384786
to top
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0425F02
          Length = 176979

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                     
Query: 148   taggagggtccaaacacttcatatttgcaaactgggcagg 187
             ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 93364 taggaaggtccaaacacttcatatttgcaaactgggcagg 93325
to top
>gb|AY112568.1| Zea mays CL32837_1 mRNA sequence
          Length = 709

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 ggtccaaacacttcatatttgcaaactgggcaggtcttgtcgatcttgagccacttggtg 213
           ||||| |||| |||||||||||| || ||||| | ||||| || | ||||||| ||||||
Sbjct: 259 ggtccgaacagttcatatttgcatacagggcatggcttgttgaccctgagccatttggtg 318

                  
Query: 214 atgcaag 220
           | |||||
Sbjct: 319 acgcaag 325
to top
>gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, complete sequence
          Length = 221860

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 173   tgcaaactgggcaggtcttgt 193
             |||||||||||||||||||||
Sbjct: 85874 tgcaaactgggcaggtcttgt 85894
to top
>gb|AF000197.2| Caenorhabditis elegans cosmid T21G5, complete sequence
          Length = 32028

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 47    catcttttctttcttttgaac 67
             |||||||||||||||||||||
Sbjct: 11955 catcttttctttcttttgaac 11935
to top
>emb|BX649599.7| Zebrafish DNA sequence from clone CH211-224B1 in linkage group 18,
              complete sequence
          Length = 162087

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 162    cacttcatatttgcaaactgg 182
              |||||||||||||||||||||
Sbjct: 157574 cacttcatatttgcaaactgg 157554
to top
>gb|AC108848.12| Mus musculus chromosome 5, clone RP23-300K5, complete sequence
          Length = 231380

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 173    tgcaaactgggcaggtcttgt 193
              |||||||||||||||||||||
Sbjct: 228208 tgcaaactgggcaggtcttgt 228188
to top
>gb|AC005368.1| Homo sapiens chromosome 5, BAC clone 194j18 (LBNL H158), complete
             sequence
          Length = 118995

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    catcttttctttcttttgaa 66
             ||||||||||||||||||||
Sbjct: 38499 catcttttctttcttttgaa 38518
to top
>gb|AC083915.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-175P18, complete
             sequence
          Length = 182107

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    gaaatccaactaagtatctg 37
             ||||||||||||||||||||
Sbjct: 96919 gaaatccaactaagtatctg 96938
to top
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 197     tcttgagccacttggtgatg 216
               ||||||||||||||||||||
Sbjct: 5160231 tcttgagccacttggtgatg 5160212
to top
>gb|AC102805.6| Mus musculus chromosome 13, clone RP23-74G2, complete sequence
          Length = 136553

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    ttttctttcttttgaactga 70
             ||||||||||||||||||||
Sbjct: 40905 ttttctttcttttgaactga 40924
to top
>gb|AC108103.2| Homo sapiens chromosome 5 clone RP11-197O8, complete sequence
          Length = 151884

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    ttgagccacttggtgatgca 218
              ||||||||||||||||||||
Sbjct: 150841 ttgagccacttggtgatgca 150822
to top
>gb|AC008781.7| Homo sapiens chromosome 5 clone CTD-2024I7, complete sequence
          Length = 205516

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    catcttttctttcttttgaa 66
             ||||||||||||||||||||
Sbjct: 79326 catcttttctttcttttgaa 79307
to top
>gb|AC024565.6| Homo sapiens chromosome 5 clone CTD-2104P22, complete sequence
          Length = 108039

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  ttgagccacttggtgatgca 218
            ||||||||||||||||||||
Sbjct: 6392 ttgagccacttggtgatgca 6373
to top
>emb|BX324157.4| Zebrafish DNA sequence from clone DKEY-15N1 in linkage group 3, complete
              sequence
          Length = 272769

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tttctttcttttgaactgaa 71
              ||||||||||||||||||||
Sbjct: 235616 tttctttcttttgaactgaa 235597
to top
>gb|AC091978.3| Homo sapiens chromosome 5 clone RP11-531A21, complete sequence
          Length = 192708

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 51    ttttctttcttttgaactgaatga 74
             |||||||||||||||| |||||||
Sbjct: 64114 ttttctttcttttgaaatgaatga 64091
to top
>emb|BX537308.18| Zebrafish DNA sequence from clone DKEY-231A18 in linkage group 4,
              complete sequence
          Length = 191880

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      ctttttttctgacagtgaaa 21
              ||||||||||||||||||||
Sbjct: 129385 ctttttttctgacagtgaaa 129404


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,897,298
Number of Sequences: 3902068
Number of extensions: 3897298
Number of successful extensions: 106400
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106322
Number of HSP's gapped (non-prelim): 78
length of query: 258
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 236
effective length of database: 17,147,199,772
effective search space: 4046739146192
effective search space used: 4046739146192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top