ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet94d08 |
|---|---|
| Clone Library Name | barley_pub |
>COPZ1_BOVIN (P35604) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 45.4 bits (106), Expect = 7e-05 Identities = 31/95 (32%), Positives = 44/95 (46%) Frame = -3 Query: 450 ENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXXXXXXXXXXETDANTIAG 271 ENEL++ VL DS+ +LR +VEKR E+D + Sbjct: 85 ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVH 144 Query: 270 KVATNAADGSVPFSEQTISQALATAREHFARFLLK 166 +VA D VP +EQT+SQ L +A+E LL+ Sbjct: 145 RVALRGED--VPLTEQTVSQVLQSAKEQIKWSLLR 177
>COPZ1_PONPY (Q5R5F2) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 44.7 bits (104), Expect = 1e-04 Identities = 31/95 (32%), Positives = 44/95 (46%) Frame = -3 Query: 450 ENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXXXXXXXXXXETDANTIAG 271 ENEL++ VL DS+ +LR +VEKR E+D + Sbjct: 85 ENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVH 144 Query: 270 KVATNAADGSVPFSEQTISQALATAREHFARFLLK 166 +VA D VP +EQT+SQ L +A+E LL+ Sbjct: 145 RVALRGED--VPLTEQTVSQVLQSAKEQIKWSLLR 177
>COPZ1_MOUSE (P61924) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 44.7 bits (104), Expect = 1e-04 Identities = 31/95 (32%), Positives = 44/95 (46%) Frame = -3 Query: 450 ENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXXXXXXXXXXETDANTIAG 271 ENEL++ VL DS+ +LR +VEKR E+D + Sbjct: 85 ENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVH 144 Query: 270 KVATNAADGSVPFSEQTISQALATAREHFARFLLK 166 +VA D VP +EQT+SQ L +A+E LL+ Sbjct: 145 RVALRGED--VPLTEQTVSQVLQSAKEQIKWSLLR 177
>COPZ1_HUMAN (P61923) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 44.7 bits (104), Expect = 1e-04 Identities = 31/95 (32%), Positives = 44/95 (46%) Frame = -3 Query: 450 ENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXXXXXXXXXXETDANTIAG 271 ENEL++ VL DS+ +LR +VEKR E+D + Sbjct: 85 ENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVH 144 Query: 270 KVATNAADGSVPFSEQTISQALATAREHFARFLLK 166 +VA D VP +EQT+SQ L +A+E LL+ Sbjct: 145 RVALRGED--VPLTEQTVSQVLQSAKEQIKWSLLR 177
>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 210 Score = 39.3 bits (90), Expect = 0.005 Identities = 30/101 (29%), Positives = 46/101 (45%) Frame = -3 Query: 468 VTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXXXXXXXXXXETD 289 V ENEL++ +VL +S+ +LR +VEKR E+D Sbjct: 112 VVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESD 171 Query: 288 ANTIAGKVATNAADGSVPFSEQTISQALATAREHFARFLLK 166 + KV A DG + +EQ+++Q L +A+E LLK Sbjct: 172 PQQVIQKVNFRADDGGL--TEQSVAQVLQSAKEQIKWSLLK 210
>COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 205 Score = 38.5 bits (88), Expect = 0.009 Identities = 29/101 (28%), Positives = 44/101 (43%) Frame = -3 Query: 468 VTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXXXXXXXXXXETD 289 V ENEL++ +VL DS+ +LR +VEKR E+D Sbjct: 107 VVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDETVDGGVILESD 166 Query: 288 ANTIAGKVATNAADGSVPFSEQTISQALATAREHFARFLLK 166 + KV D + +EQ+++Q L +A+E LLK Sbjct: 167 PQQVIQKVNFRTDDSGL--TEQSVAQVLQSAKEQIKWSLLK 205
>COPZ_CAEEL (O17901) Probable coatomer subunit zeta (Zeta-coat protein)| (Zeta-COP) Length = 184 Score = 35.8 bits (81), Expect = 0.057 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 4/99 (4%) Frame = -3 Query: 450 ENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXXXXXXXXXXETDANTIAG 271 ENEL + L D+V ++LR +VEK+ ETDA + Sbjct: 88 ENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIIDEICDEGIIMETDAQAVVQ 147 Query: 270 KVATNAADGSVPFSEQTISQA----LATAREHFARFLLK 166 + A + + V FS+Q++SQ + +A E F LLK Sbjct: 148 RTALKSDE--VSFSDQSVSQIGFSFMKSANEQFKWSLLK 184
>LRP1_CHICK (P98157) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) Length = 4543 Score = 29.3 bits (64), Expect = 5.3 Identities = 25/90 (27%), Positives = 40/90 (44%) Frame = +1 Query: 88 QAYSIVARPQTHTSCNRGDRRSSGFSLQKKSCKVFPGCGQSLGYCLLREGNRTVSSIGCN 267 +A I A+ T+ +C RG ++ K SC+ C LR G T S + N Sbjct: 3793 EAQCIQAQSSTYCTCRRGFQKVP----DKNSCQDVNEC--------LRFG--TCSQLCNN 3838 Query: 268 LPRNGIRICFKNYAAINNLINAEKYQVQVL 357 + + C KN+ +N+ AE + Q+L Sbjct: 3839 TKGSHVCSCAKNFMKTDNMCKAEGSEHQIL 3868
>LAMA_DROME (Q00174) Laminin alpha chain precursor| Length = 3712 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 9/52 (17%) Frame = -2 Query: 292 RCEYH-CGEGCNQCC*RFCSLL*ADNI--------PSSGHSQGTLCKISSEV 164 RC++H CG CN+CC F N P + H CK EV Sbjct: 297 RCQHHTCGIQCNECCPGFEQKKWRQNTNARPFNCEPCNCHGHSNECKYDEEV 348
>RL37_CANAL (Q9P836) 60S ribosomal protein L37 (Fragment)| Length = 88 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +1 Query: 115 QTHTSCNRGDRRSSGFSLQKKSCKVFPGCG 204 ++HT CNR RRS F +QKK+C CG Sbjct: 12 KSHTLCNRCGRRS--FHVQKKTCS---SCG 36
>RL37B_YEAST (P51402) 60S ribosomal protein L37-B (L35) (YP55)| Length = 87 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +1 Query: 115 QTHTSCNRGDRRSSGFSLQKKSCKVFPGCG 204 ++HT CNR RRS F +QKK+C CG Sbjct: 13 KSHTLCNRCGRRS--FHVQKKTCS---SCG 37
>RL37A_YEAST (P49166) 60S ribosomal protein L37-A (L35) (YP55)| Length = 87 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +1 Query: 115 QTHTSCNRGDRRSSGFSLQKKSCKVFPGCG 204 ++HT CNR RRS F +QKK+C CG Sbjct: 13 KSHTLCNRCGRRS--FHVQKKTCS---SCG 37 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,482,937 Number of Sequences: 219361 Number of extensions: 1138923 Number of successful extensions: 3388 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3291 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3384 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
