ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet94d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 38 0.011
2CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 37 0.024
314KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 34 0.16
4ITA2_DROME (P12080) Integrin alpha-PS2 precursor (Position-speci... 29 3.8
5GALT3_CAEEL (P34678) Polypeptide N-acetylgalactosaminyltransfera... 28 6.6
6NOLC_RHIFR (P26508) Protein nolC 28 8.6

>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 412 GDASVKCCPLVQXXXXXXXXXXXXXXXXXKVLNLALYVPLAHQLLVNDCGCAVPPGYTC 236
           G A   CCPL+                  K+LN+ + +P+A Q+L++DCG   P  + C
Sbjct: 285 GSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343



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>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 397 KCCPLVQXXXXXXXXXXXXXXXXXKVLNLALYVPLAHQLLVNDCGCAVPPGYTC 236
           +CCPL++                  VL + L VPL+   ++N+CG   P  +TC
Sbjct: 74  QCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127



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>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 403 SVKCCPLVQXXXXXXXXXXXXXXXXXKVLNLALYVPLAHQLLVNDCGCAVPPGYTC 236
           ++ CC L++                  +L   L +P+A  L++N+CG  VP G+ C
Sbjct: 81  TLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136



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>ITA2_DROME (P12080) Integrin alpha-PS2 precursor (Position-specific antigen 2|
            alpha chain) (Protein inflated)
          Length = 1396

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = +2

Query: 110  MNKPEASGFIDTTLISNSWHNKLC-------TALHACAGTWNGRTDGSGAGVSRRHGAAA 268
            +N+PE  G I    ++ + +N L        + L A    WN       +  S   G A+
Sbjct: 881  LNQPETGGKIQCDDVAFNEYNLLLDEKLVKKSYLQAQGAIWNSAQVSGQSSSSSSSGGAS 940

Query: 269  VVDEQLVGEGHVKG 310
            V  E+  GEG V+G
Sbjct: 941  VHIEKARGEGFVRG 954



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>GALT3_CAEEL (P34678) Polypeptide N-acetylgalactosaminyltransferase 3 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           3) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 3) (pp-GaNTase 3)
           (GalNAc-T1)
          Length = 612

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 197 CAGTWNGRTDGSGAGVSRRHGAAAVVDEQLVGEGHVKGE 313
           C  T NG+ DG   G+   HGA       L G+G ++ +
Sbjct: 496 CVDT-NGKKDGQAPGIQACHGAGGNQAWSLTGKGEIRSD 533



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>NOLC_RHIFR (P26508) Protein nolC|
          Length = 392

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 407 RQRQVLP-PGAGHRRAHRXGVPLHRHQGQ 324
           R  Q +P PG GHR AH  G    RH+G+
Sbjct: 202 RSLQQMPWPGPGHRGAHAVGQYSDRHRGR 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,929,293
Number of Sequences: 219361
Number of extensions: 825058
Number of successful extensions: 2272
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2269
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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