>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein
          Length = 1225

 Score =  299 bits (151), Expect = 2e-78
 Identities = 181/191 (94%)
 Strand = Plus / Minus

                                                                        
Query: 7    aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 66
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 1140

                                                                        
Query: 67   aaattacatacaagtcctttgtctgggttcaggggaatacagagcaagagcaagagtacc 126
            | |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  
Sbjct: 1139 agattacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagt 1080

                                                                        
Query: 127  acatcaaacttggaaaacaaattggaattccacggtaacacggacaatgggaaaagaggg 186
            ||||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct: 1079 acatcaaacttggaagacaaattggaattccacggtaacagggacgatgggaagagaggg 1020

                       
Query: 187  ccccccccatc 197
            || ||||||||
Sbjct: 1019 ccgcccccatc 1009

>gb|AC100734.4| Mus musculus chromosome 15, clone RP24-316L11, complete sequence
          Length = 182088

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 128    catcaaacttggaaaacaaatt 149
              ||||||||||||||||||||||
Sbjct: 178600 catcaaacttggaaaacaaatt 178579

>gb|AC132807.3| Homo sapiens chromosome 3 clone RP11-147G2, complete sequence
          Length = 171678

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 126   cacatcaaacttggaaaacaaa 147
             ||||||||||||||||||||||
Sbjct: 75581 cacatcaaacttggaaaacaaa 75602

>gb|AC161347.2| Mus musculus chromosome 15, clone RP23-273M5, complete sequence
          Length = 191833

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 128   catcaaacttggaaaacaaatt 149
             ||||||||||||||||||||||
Sbjct: 43760 catcaaacttggaaaacaaatt 43781

>ref|NM_187966.1| Oryza sativa (japonica cultivar-group), Ozsa8386 predicted mRNA
          Length = 2160

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 127  acatcaaacttggaaaacaaa 147
            |||||||||||||||||||||
Sbjct: 1148 acatcaaacttggaaaacaaa 1168

>ref|NM_184841.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2673

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 127  acatcaaacttggaaaacaaa 147
            |||||||||||||||||||||
Sbjct: 1043 acatcaaacttggaaaacaaa 1063

>gb|AC092778.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015G17, complete sequence
          Length = 158173

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   acatcaaacttggaaaacaaa 147
             |||||||||||||||||||||
Sbjct: 63877 acatcaaacttggaaaacaaa 63897

>gb|AC135503.8| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0117L20
              map S2137, complete sequence
          Length = 125303

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 127    acatcaaacttggaaaacaaa 147
              |||||||||||||||||||||
Sbjct: 117294 acatcaaacttggaaaacaaa 117314

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 127      acatcaaacttggaaaacaaa 147
                |||||||||||||||||||||
Sbjct: 22284941 acatcaaacttggaaaacaaa 22284921

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 127      acatcaaacttggaaaacaaa 147
                |||||||||||||||||||||
Sbjct: 27969422 acatcaaacttggaaaacaaa 27969402



 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 127      acatcaaacttggaaaacaaa 147
                |||||||||||||||||||||
Sbjct: 27921917 acatcaaacttggaaaacaaa 27921897



 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 127     acatcaaacttggaaaacaaa 147
               |||||||||||||||||||||
Sbjct: 8213939 acatcaaacttggaaaacaaa 8213959

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 127      acatcaaacttggaaaacaaa 147
                |||||||||||||||||||||
Sbjct: 20115150 acatcaaacttggaaaacaaa 20115170

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 127      acatcaaacttggaaaacaaa 147
                |||||||||||||||||||||
Sbjct: 25038553 acatcaaacttggaaaacaaa 25038533



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 124     accacatcaaacttggaaaacaaa 147
               |||| |||||||||||||||||||
Sbjct: 3648515 accaaatcaaacttggaaaacaaa 3648492

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 127      acatcaaacttggaaaacaaa 147
                |||||||||||||||||||||
Sbjct: 22277970 acatcaaacttggaaaacaaa 22277950

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 127      acatcaaacttggaaaacaaa 147
                |||||||||||||||||||||
Sbjct: 34118087 acatcaaacttggaaaacaaa 34118067



 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 127     acatcaaacttggaaaacaaa 147
               |||||||||||||||||||||
Sbjct: 8841528 acatcaaacttggaaaacaaa 8841548

>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034E02
          Length = 165497

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 127    acatcaaacttggaaaacaaa 147
              |||||||||||||||||||||
Sbjct: 114565 acatcaaacttggaaaacaaa 114545

>dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0469E09
          Length = 146081

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   acatcaaacttggaaaacaaa 147
             |||||||||||||||||||||
Sbjct: 77556 acatcaaacttggaaaacaaa 77576

>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBa0047P18
          Length = 169128

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 127  acatcaaacttggaaaacaaa 147
            |||||||||||||||||||||
Sbjct: 8650 acatcaaacttggaaaacaaa 8670

>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0025J22
          Length = 175355

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 127   acatcaaacttggaaaacaaa 147
             |||||||||||||||||||||
Sbjct: 94669 acatcaaacttggaaaacaaa 94649

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 127      acatcaaacttggaaaacaaa 147
                |||||||||||||||||||||
Sbjct: 27945478 acatcaaacttggaaaacaaa 27945458



 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 127     acatcaaacttggaaaacaaa 147
               |||||||||||||||||||||
Sbjct: 8284702 acatcaaacttggaaaacaaa 8284722

>ref|XM_521983.1| PREDICTED: Pan troglodytes similar to expressed sequence AI841794
           (LOC466584), mRNA
          Length = 1269

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 15  tgctggatttgcacaacaac 34
           ||||||||||||||||||||
Sbjct: 407 tgctggatttgcacaacaac 426

>ref|NM_001005210.1| Homo sapiens leucine rich repeat containing 55 (LRRC55), mRNA
          Length = 3797

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 15  tgctggatttgcacaacaac 34
           ||||||||||||||||||||
Sbjct: 554 tgctggatttgcacaacaac 573

>gb|AC114002.4| Mus musculus BAC clone RP23-165H7 from 12, complete sequence
          Length = 200112

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 132  aaacttggaaaacaaattgg 151
            ||||||||||||||||||||
Sbjct: 8769 aaacttggaaaacaaattgg 8788

>emb|AL353629.22| Human DNA sequence from clone RP11-30L4 on chromosome 9q22.1-22.33
              Contains the 5' end of a novel gene, two novel genes, the
              C9orf10 gene for chromosome 9 open reading frame 10, the 5'
              end of the PHF2 gene for PHD finger protein 2 and three CpG
              islands, complete sequence
          Length = 170845

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    cttggaaaacaaattggaat 154
              ||||||||||||||||||||
Sbjct: 147472 cttggaaaacaaattggaat 147453

>dbj|AK127591.1| Homo sapiens cDNA FLJ45686 fis, clone FCBBF3012443
          Length = 3797

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 15  tgctggatttgcacaacaac 34
           ||||||||||||||||||||
Sbjct: 554 tgctggatttgcacaacaac 573

>gb|AC159198.2| Mus musculus BAC clone RP23-388C15 from chromosome 12, complete sequence
          Length = 213311

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    aaacttggaaaacaaattgg 151
              ||||||||||||||||||||
Sbjct: 196800 aaacttggaaaacaaattgg 196819

>gb|AC117517.7| Homo sapiens X BAC RP13-356M24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 121628

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    ttacatacaagtcctttgtc 89
             ||||||||||||||||||||
Sbjct: 93714 ttacatacaagtcctttgtc 93695

>gb|AC154302.1| Mus musculus BAC clone RP23-378K2 from chromosome 9, complete sequence
          Length = 167400

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    cagagcaagagcaagagtac 125
              ||||||||||||||||||||
Sbjct: 100713 cagagcaagagcaagagtac 100694

>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0577B11
          Length = 180355

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 124    accacatcaaacttggaaaacaaa 147
              |||| |||||||||||||||||||
Sbjct: 127021 accaaatcaaacttggaaaacaaa 126998

>dbj|AP001085.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-632K5, complete
              sequence
          Length = 175747

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 118    aagagtaccacatcaaacttggaaaaca 145
              ||||||||||||| |||| |||||||||
Sbjct: 138883 aagagtaccacatgaaacctggaaaaca 138910

>dbj|AP001786.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-176J24, complete
             sequences
          Length = 171744

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    tgctggatttgcacaacaac 34
             ||||||||||||||||||||
Sbjct: 92890 tgctggatttgcacaacaac 92909

>gb|DQ151348.1| Petromyzon marinus clone T.D8 variable lymphocyte receptor
           diversity region (VLR) mRNA, partial cds
          Length = 534

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 15  tgctggatttgcacaacaac 34
           ||||||||||||||||||||
Sbjct: 263 tgctggatttgcacaacaac 282

>emb|AL844225.9| Mouse DNA sequence from clone RP23-119M24 on chromosome 2, complete
              sequence
          Length = 137220

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 127    acatcaaacttggaaaacaaattg 150
              |||||| |||||||||||||||||
Sbjct: 102154 acatcagacttggaaaacaaattg 102131


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,255,841
Number of Sequences: 3902068
Number of extensions: 2255841
Number of successful extensions: 147350
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146925
Number of HSP's gapped (non-prelim): 425
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)