| Clone Name | rbaet94c06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_195345.1| Oryza sativa (japonica cultivar-group) putative acetyl transferase (OSJNBa0003P07.2), mRNA Length = 1458 Score = 73.8 bits (37), Expect = 4e-10 Identities = 118/145 (81%) Strand = Plus / Minus Query: 223 ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 282 |||| ||| |||| |||||||||||||||||||| || || ||||||||| | ||| Sbjct: 1381 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 1322 Query: 283 tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 342 |||||| | |||| ||||| || ||||| || |||||||| || || | ||||| |||| Sbjct: 1321 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 1262 Query: 343 cgccggcgaggtcagcccacccgaa 367 ||||||||| |||||||||||||| Sbjct: 1261 cgccggcgaactcagcccacccgaa 1237
>gb|AC093612.18| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0003P07, complete sequence Length = 175116 Score = 73.8 bits (37), Expect = 4e-10 Identities = 118/145 (81%) Strand = Plus / Minus Query: 223 ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 282 |||| ||| |||| |||||||||||||||||||| || || ||||||||| | ||| Sbjct: 12691 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 12632 Query: 283 tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 342 |||||| | |||| ||||| || ||||| || |||||||| || || | ||||| |||| Sbjct: 12631 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 12572 Query: 343 cgccggcgaggtcagcccacccgaa 367 ||||||||| |||||||||||||| Sbjct: 12571 cgccggcgaactcagcccacccgaa 12547
>gb|AC105377.12| Oryza sativa chromosome 10 BAC OSJNBa0034E15 genomic sequence, complete sequence Length = 100285 Score = 73.8 bits (37), Expect = 4e-10 Identities = 118/145 (81%) Strand = Plus / Minus Query: 223 ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 282 |||| ||| |||| |||||||||||||||||||| || || ||||||||| | ||| Sbjct: 92396 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 92337 Query: 283 tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 342 |||||| | |||| ||||| || ||||| || |||||||| || || | ||||| |||| Sbjct: 92336 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 92277 Query: 343 cgccggcgaggtcagcccacccgaa 367 ||||||||| |||||||||||||| Sbjct: 92276 cgccggcgaactcagcccacccgaa 92252
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 73.8 bits (37), Expect = 4e-10 Identities = 118/145 (81%) Strand = Plus / Minus Query: 223 ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 282 |||| ||| |||| |||||||||||||||||||| || || ||||||||| | ||| Sbjct: 6294838 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 6294779 Query: 283 tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 342 |||||| | |||| ||||| || ||||| || |||||||| || || | ||||| |||| Sbjct: 6294778 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 6294719 Query: 343 cgccggcgaggtcagcccacccgaa 367 ||||||||| |||||||||||||| Sbjct: 6294718 cgccggcgaactcagcccacccgaa 6294694
>dbj|AK100207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042A21, full insert sequence Length = 2209 Score = 73.8 bits (37), Expect = 4e-10 Identities = 118/145 (81%) Strand = Plus / Minus Query: 223 ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 282 |||| ||| |||| |||||||||||||||||||| || || ||||||||| | ||| Sbjct: 1805 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 1746 Query: 283 tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 342 |||||| | |||| ||||| || ||||| || |||||||| || || | ||||| |||| Sbjct: 1745 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 1686 Query: 343 cgccggcgaggtcagcccacccgaa 367 ||||||||| |||||||||||||| Sbjct: 1685 cgccggcgaactcagcccacccgaa 1661
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 73.8 bits (37), Expect = 4e-10 Identities = 118/145 (81%) Strand = Plus / Minus Query: 223 ccatcgccgccctcggcagcagcatcgacaccacggtggagacctcgccgtcttcattcc 282 |||| ||| |||| |||||||||||||||||||| || || ||||||||| | ||| Sbjct: 6296424 ccatggccaccctgggcagcagcatcgacaccaccgtcgacacctcgccggccgagttct 6296365 Query: 283 tgcaccacatgtgatcgctccctagcttagaagtgagatccccagccaagggtataccgc 342 |||||| | |||| ||||| || ||||| || |||||||| || || | ||||| |||| Sbjct: 6296364 tgcacctcgtgtggtcgcttccgagcttggaggtgagatcgcctgcgagcggtatgccgc 6296305 Query: 343 cgccggcgaggtcagcccacccgaa 367 ||||||||| |||||||||||||| Sbjct: 6296304 cgccggcgaactcagcccacccgaa 6296280
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 cggcagcagcatcgacaccac 256 ||||||||||||||||||||| Sbjct: 58470 cggcagcagcatcgacaccac 58450
>gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, complete sequence Length = 208833 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 31 acatacatatatgtgcgtgtgacat 55 ||||||||||||||| ||||||||| Sbjct: 27465 acatacatatatgtgtgtgtgacat 27441
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 cggcagcagcatcgacaccac 256 ||||||||||||||||||||| Sbjct: 20636430 cggcagcagcatcgacaccac 20636410
>gb|AC010203.14| Homo sapiens 12 BAC RP11-175P13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167569 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 acatacatatatgtgcgtgtg 51 ||||||||||||||||||||| Sbjct: 149105 acatacatatatgtgcgtgtg 149085
>dbj|AK065891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D15, full insert sequence Length = 1975 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 cggcagcagcatcgacaccac 256 ||||||||||||||||||||| Sbjct: 1368 cggcagcagcatcgacaccac 1348
>gb|AY024212.1| Oryza sativa microsatellite MRG6537 containing (TATG)X12, closest to marker C668, genomic sequence Length = 248 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 acatacatatatgtgcgtgtgaca 54 ||||||||||||||| |||||||| Sbjct: 109 acatacatatatgtgtgtgtgaca 86
>gb|AY118506.1| Drosophila melanogaster LD10773 full insert cDNA Length = 1963 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gcagcagcatcgacaccacg 257 |||||||||||||||||||| Sbjct: 1044 gcagcagcatcgacaccacg 1063
>ref|NM_136211.3| Drosophila melanogaster CG9320-RA (CG9320), mRNA Length = 2039 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gcagcagcatcgacaccacg 257 |||||||||||||||||||| Sbjct: 1156 gcagcagcatcgacaccacg 1175
>gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone mth2-76a9, complete sequence Length = 142579 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 cacaaccaaacttcaaatta 21 |||||||||||||||||||| Sbjct: 45116 cacaaccaaacttcaaatta 45135
>gb|AC093047.1| Drosophila melanogaster, chromosome 2L, region 38D-38E, BAC clone BACR31P14, complete sequence Length = 156806 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gcagcagcatcgacaccacg 257 |||||||||||||||||||| Sbjct: 153051 gcagcagcatcgacaccacg 153070
>gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, complete sequence Length = 211945 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gctggcgaagtttctgtaac 130 |||||||||||||||||||| Sbjct: 94946 gctggcgaagtttctgtaac 94927
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 acatacatatatgtgcgtgtgaca 54 ||||||||||||||| |||||||| Sbjct: 4660182 acatacatatatgtgtgtgtgaca 4660159
>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone BACR07D17, complete sequence Length = 173422 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gcagcagcatcgacaccacg 257 |||||||||||||||||||| Sbjct: 23653 gcagcagcatcgacaccacg 23672
>dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512G09 Length = 146921 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 acatacatatatgtgcgtgtgaca 54 ||||||||||||||| |||||||| Sbjct: 20427 acatacatatatgtgtgtgtgaca 20404
>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695A04 Length = 158133 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 acatacatatatgtgcgtgtgaca 54 ||||||||||||||| |||||||| Sbjct: 67398 acatacatatatgtgtgtgtgaca 67375
>ref|XM_318627.2| Anopheles gambiae str. PEST ENSANGP00000020973 (ENSANGG00000018484), partial mRNA Length = 2865 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 ctcctccgtaaacacgtccatcgc 229 ||||||||| |||||||||||||| Sbjct: 1044 ctcctccgtcaacacgtccatcgc 1021
>gb|AY625898.1| Pseudomonas aeruginosa phage F116, complete genome Length = 65195 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 catcgacaccacggtggaga 264 |||||||||||||||||||| Sbjct: 44226 catcgacaccacggtggaga 44245
>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete sequence Length = 270158 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gcagcagcatcgacaccacg 257 |||||||||||||||||||| Sbjct: 13467 gcagcagcatcgacaccacg 13486
>emb|AL135978.4|CNS01DVN Human chromosome 14 DNA sequence BAC R-125H8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173043 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 aaacatacatatatgtgcgt 48 |||||||||||||||||||| Sbjct: 45033 aaacatacatatatgtgcgt 45052
>gb|AC099722.7| Mus musculus chromosome 3, clone RP23-282E13, complete sequence Length = 233425 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atacatatatgtgcgtgtga 52 |||||||||||||||||||| Sbjct: 137141 atacatatatgtgcgtgtga 137160
>emb|CT033786.13| Mouse DNA sequence from clone RP24-298F18 on chromosome 14, complete sequence Length = 185421 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 catacatatatgtgcgtgtg 51 |||||||||||||||||||| Sbjct: 152102 catacatatatgtgcgtgtg 152083
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 gcagcatcgacaccacggtg 260 |||||||||||||||||||| Sbjct: 4460354 gcagcatcgacaccacggtg 4460373
>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582 (D85)), complete sequence Length = 142799 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 gcagcagcatcgacaccacg 257 |||||||||||||||||||| Sbjct: 65882 gcagcagcatcgacaccacg 65863
>gb|AC102340.10| Mus musculus chromosome 3, clone RP23-163J23, complete sequence Length = 199087 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 atacatatatgtgcgtgtga 52 |||||||||||||||||||| Sbjct: 146 atacatatatgtgcgtgtga 165
>gb|AC144783.4| Mus musculus BAC clone RP23-57A16 from 10, complete sequence Length = 246132 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 acatacatatatgtgcgtgt 50 |||||||||||||||||||| Sbjct: 154000 acatacatatatgtgcgtgt 154019
>gb|AC073434.42| Mus musculus strain C57BL/6J chromosome 9 clone rp23-159l13, complete sequence Length = 184073 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 acatacatatatgtgcgtgt 50 |||||||||||||||||||| Sbjct: 3268 acatacatatatgtgcgtgt 3287
>gb|AC161259.2| Mus musculus BAC clone RP23-465D18 from chromosome 9, complete sequence Length = 175659 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 acatacatatatgtgcgtgt 50 |||||||||||||||||||| Sbjct: 47751 acatacatatatgtgcgtgt 47732
>dbj|D45246.1|STMORFD Streptomyces griseus genes for orfD and afsKG (protein Ser/Thr kinase), complete cds Length = 6183 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cggcagcagcatcgacacca 255 |||||||||||||||||||| Sbjct: 5421 cggcagcagcatcgacacca 5440 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,603,869 Number of Sequences: 3902068 Number of extensions: 3603869 Number of successful extensions: 73863 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73586 Number of HSP's gapped (non-prelim): 271 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)