ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet94c01 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 35.4 bits (80), Expect = 0.059 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 17/75 (22%) Frame = -1 Query: 433 CCG-------NQTVPCGRP-----GCSV----CDDPSMYGSWDGTHPTEAVYKVIADGVL 302 CCG + T PCG G + C PS+ +WDG H TEA + D + Sbjct: 305 CCGYGGKYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANEYFFDQIS 364 Query: 301 HGPHSS-PLPLAKTC 260 G S P+PL C Sbjct: 365 TGAFSDPPVPLNMAC 379
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 35.4 bits (80), Expect = 0.059 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 409 CGRPGCSVCDDPSMYGSWDGTHPTEAVYKVI 317 C + +C + S Y WDG HPT+ YK I Sbjct: 490 CKKSTSKICPNTSSYLFWDGVHPTQRAYKTI 520
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 31.6 bits (70), Expect = 0.85 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 16/74 (21%) Frame = -1 Query: 433 CCG-------NQTVPCGRP----GCSV-----CDDPSMYGSWDGTHPTEAVYKVIADGVL 302 CCG N+ + CG G V CD+P WDG H T+A K I D + Sbjct: 303 CCGHGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFIFDKIA 362 Query: 301 HGPHSSPLPLAKTC 260 G L+K C Sbjct: 363 PG-------LSKAC 369
>SP7_HUMAN (Q8TDD2) Transcription factor Sp7 (Zinc finger protein osterix)| Length = 431 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -1 Query: 376 PSMYGSWDGTHPTEAVYKV-IADGVLHGPHSSPLP 275 PS+Y S D THP + YK I G+ GP ++P P Sbjct: 123 PSVYTSLDMTHPYGSWYKAGIHAGISPGPGNTPTP 157
>SP7_MOUSE (Q8VI67) Transcription factor Sp7 (Zinc finger protein osterix)| (C22) Length = 428 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -1 Query: 376 PSMYGSWDGTHPTEAVYKV-IADGVLHGPHSSPLP 275 PS+Y S D THP + YK I G+ GP ++P P Sbjct: 120 PSVYTSLDMTHPYGSWYKAGIHAGISPGPGNTPTP 154
>GADH2_PECCY (O34215) Gluconate 2-dehydrogenase cytochrome c subunit precursor| (EC 1.1.99.3) (GADH cytochrome c subunit) (GA 2-DH cytochrome c subunit) Length = 441 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%) Frame = +3 Query: 264 VLARGRG-----DECGPCSTPSAITLYTASVGCVPSHEPYMDGSS 383 VLARGR CG C TP +IT+ ++ +H+ Y+ GSS Sbjct: 174 VLARGRYLVEGLGHCGACHTPRSITMQEKALSNDGAHD-YLSGSS 217
>FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related protein FKHL6)| (Forkhead-related transcription factor 2) (FREAC-2) (Forkhead-related activator 2) Length = 444 Score = 29.3 bits (64), Expect = 4.2 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +3 Query: 276 GRGDECGPCSTPSAITLYTASVGCVPSHEPYMDGSSHTLHPG 401 G G + GP S+ S + A + H PY ++H PG Sbjct: 303 GGGGDYGPDSSSSPVPSSPAMASAIECHSPYTSPAAHWSSPG 344
>VL2_HPV34 (P36758) Minor capsid protein L2| Length = 472 Score = 29.3 bits (64), Expect = 4.2 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +3 Query: 309 PSAITLYTASVGCVPSHEPYMDGSSHTLHPGL 404 P+A T++T +V PS Y+ GS LHP L Sbjct: 421 PTAETIFTPTVPVQPSGPIYIYGSDFILHPSL 452
>PDXH_WOLPM (Q73G09) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP| oxidase) (PNPOx) Length = 216 Score = 29.3 bits (64), Expect = 4.2 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +3 Query: 297 PCSTPSAITLYTASVGCVPS 356 PC P+A+TL T S C+PS Sbjct: 43 PCEQPTAMTLATCSKDCIPS 62
>PSB9_HUMAN (P28065) Proteasome subunit beta type 9 precursor (EC 3.4.25.1)| (Proteasome chain 7) (Macropain chain 7) (Multicatalytic endopeptidase complex chain 7) (RING12 protein) (Low molecular mass protein 2) Length = 219 Score = 28.5 bits (62), Expect = 7.2 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -3 Query: 371 HVWLVGWDTPDGGSVQGDR*WCATRATFVPSSSG 270 H+ + GWD +GG V G TR F SG Sbjct: 117 HLMVAGWDQREGGQVYGTLGGMLTRQPFAIGGSG 150
>DYH9_HUMAN (Q9NYC9) Ciliary dynein heavy chain 9 (Axonemal beta dynein heavy| chain 9) Length = 4486 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = +2 Query: 122 ILDRRFVTIFHTCMISDDQPILYTTTKIMTIISRISNRGK 241 + D RF+ + + + S + P LY+ ++ IIS + N K Sbjct: 2887 VADERFLVLINDLLASGEIPDLYSDDEVENIISNVRNEVK 2926
>PPCK_BURPS (Q63VB7) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 621 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +1 Query: 253 WEGKSWPEEEGTNVARVAHHQRSPCTLPPS 342 W+G +W E G R A H S T P S Sbjct: 378 WQGNAWTPEIGRETGRKAAHPNSRFTAPAS 407
>PPCK_BURMA (Q62FI7) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 621 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +1 Query: 253 WEGKSWPEEEGTNVARVAHHQRSPCTLPPS 342 W+G +W E G R A H S T P S Sbjct: 378 WQGNAWTPEIGRETGRKAAHPNSRFTAPAS 407
>GELS_CHICK (O93510) Gelsolin precursor (Actin-depolymerizing factor) (ADF)| (Brevin) (Homogenin) Length = 778 Score = 28.1 bits (61), Expect = 9.4 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 10/56 (17%) Frame = +1 Query: 235 WKGFLSWEGKSWPEEEGTNVARVA----------HHQRSPCTLPPSGVSHPTSHTW 372 W W GK EEE T + A +R+P TL G+ PT W Sbjct: 700 WDQVFVWIGKDAQEEEKTEALKSAKRYIETDPASRDKRTPVTLVKQGLEPPTFSGW 755
>YH19_RHOCA (Q02998) Hypothetical 104.1 kDa protein in hypE 3'region (ORF19)| Length = 952 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -1 Query: 412 PCGRPGCSVCDDPSMYGSWDGTHPTEAVYKVI 317 P G G +V DD G +DG P EA+ +++ Sbjct: 153 PDGATGVAVDDDRVAVGQFDGLEPAEALGRIV 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,895,830 Number of Sequences: 219361 Number of extensions: 1679853 Number of successful extensions: 4594 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4460 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4594 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
