>RIMM_THET8 (Q5SJH5) Probable 16S rRNA-processing protein rimM|
          Length = 162

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +1

Query: 244 DYPPLERTRYIVINLIGL-VFLGVDEGEEPPELA-VVGAGALQVEQVPGLGDALQ 402
           D PPLE  RY    LIGL V++   EG +  E+  ++ AGA  V  + G+G+ L+
Sbjct: 80  DLPPLEEGRYYYFALIGLPVYV---EGRQVGEVVDILDAGAQDVLIIRGVGERLR 131

>RIMM_THET2 (Q72JU7) Probable 16S rRNA-processing protein rimM|
          Length = 162

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +1

Query: 244 DYPPLERTRYIVINLIGL-VFLGVDEGEEPPELA-VVGAGALQVEQVPGLGDALQ 402
           D PPLE  RY    LIGL V++   EG +  E+  ++ AGA  V  + G+G+ L+
Sbjct: 80  DLPPLEEGRYYYFALIGLPVYV---EGRQVGEVVDILDAGAQDVLIIRGVGERLR 131

>YTXM_BACSU (P23974) Putative esterase ytxM (EC 3.1.-.-)|
          Length = 274

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 393 IPKAGHLLHLERPCAYNRQLGRFLAFV 313
           +PKAGH +H+E+P  + + +  FL  +
Sbjct: 248 VPKAGHTVHVEQPRLFGKIVSEFLTSI 274

>LRIG3_MOUSE (Q6P1C6) Leucine-rich repeats and immunoglobulin-like domains protein|
            3 precursor
          Length = 1117

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 144  HTTLHDCLERSTHAAAWKAKPLSTTPS*VYMATFGRPADY-LMDAFTSS 1
            HT    CL +S+   +   +P S T S  +M TFG+P     +DAF+SS
Sbjct: 1006 HTVQTLCLNKSSVDFSTGPEPGSATSSNSFMGTFGKPLRRPHLDAFSSS 1054

>ELN_CHICK (P07916) Elastin precursor (Tropoelastin) (Fragment)|
          Length = 750

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 292 GLVFLGVDEGEEPPELAVVGAGALQVEQVPG 384
           G+  +GV  G +PP+  V GAG   V  +PG
Sbjct: 644 GIPQVGVQPGAKPPKFGVPGAGVPGVGGIPG 674

>OR2B3_HUMAN (O76000) Olfactory receptor 2B3 (Olfactory receptor 6-4) (OR6-4)|
           (Olfactory receptor OR6-14) (Hs6M1-1)
          Length = 313

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +1

Query: 136 SSMRYVLQMNIDRTGYQLCFAFLFCEEPALLAR*LIDYPPLERTRYIVINLIGLV 300
           S ++  L +N+ R G+Q    F FCE PALL     D  P+E   +    LI L+
Sbjct: 156 SVLQSSLTLNMPRCGHQEVDHF-FCEVPALLKLSCADTKPIEAELFFFSVLILLI 209

>MURD_PSEAE (Q9HVZ9) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 448

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/35 (51%), Positives = 19/35 (54%)
 Frame = +1

Query: 292 GLVFLGVDEGEEPPELAVVGAGALQVEQVPGLGDA 396
           GL F  VD  E PPELA + A   QVE   G  DA
Sbjct: 30  GLPFAVVDTRENPPELATLRAQYPQVEVRCGELDA 64

>SIEB_LAMBD (P03762) Superinfection exclusion protein B|
          Length = 183

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 214 EPALLAR*LIDYPPLERTRYIVINLIGLVFLGVDEGEE 327
           +P ++   +    PLERT Y+++  +GL+ L  D   E
Sbjct: 6   DPLVILGRVFSNEPLERTMYMIVIWVGLLLLSPDNWPE 43

>REC2_HAEIN (P44408) Recombination protein 2|
          Length = 788

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 180 LPALLCFSFLRGTCFACTIINRLSSSGTNKIYSDQFNWL 296
           +P +L   F  GT F+  + N+L+   T  I   Q NWL
Sbjct: 412 VPLILFAVFTNGTMFSWQLANKLAEGITGLISVFQGNWL 450

>KI67_HUMAN (P46013) Antigen KI-67|
          Length = 3256

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +1

Query: 244 DYPPLERTRYIVI----NLIGLVFLGVDEGEEP 330
           + P L  T +I I    NL+G  F G D GEEP
Sbjct: 765 EQPQLTSTCHIAISNSENLLGKQFQGTDSGEEP 797

>VRN2_ARATH (Q8W5B1) Polycomb group protein VERNALIZATION 2|
          Length = 440

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -2

Query: 296 KPIKLITIYLVRSRGG*S-----INYRASKAGSSQKRKAKQSW*PVLSMFICN 153
           KP++L  I+ +RS G  S     +NY   K G+ +KRK++ +   V +   CN
Sbjct: 27  KPVRLYNIFHLRSLGNPSFLPRCLNY---KIGAKRKRKSRSTGMVVFNYKDCN 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,327,190
Number of Sequences: 219361
Number of extensions: 889422
Number of successful extensions: 1737
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)