>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7094

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16   TVYISFSNYFHEKIKPIP-LELNYSPEEGDKTTITNACCFLHQGKLFRPQLLSAKQRVT 189
            ++++ +SN  H K+K +P + +     + DK    NA  F  Q  LFRP L+  K  +T
Sbjct: 2507 SLFVDYSNLLHSKVKSVPNMHVVVVENDADKANFLNAAVFYAQ-SLFRPILMVDKNLIT 2564

>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16   TVYISFSNYFHEKIKPIP-LELNYSPEEGDKTTITNACCFLHQGKLFRPQLLSAKQRVT 189
            ++++ +SN  H K+K +P + +     + DK    NA  F  Q  LFRP L+  K  +T
Sbjct: 2507 SLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQ-SLFRPILMVDKNLIT 2564

>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16   TVYISFSNYFHEKIKPIP-LELNYSPEEGDKTTITNACCFLHQGKLFRPQLLSAKQRVT 189
            ++++ +SN  H K+K +P + +     + DK    NA  F  Q  LFRP L+  K  +T
Sbjct: 2507 SLFVDYSNLLHSKVKGVPNMHVVVVENDADKANFLNAAVFYAQ-SLFRPILMVDKNLIT 2564

>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7059

 Score = 35.4 bits (80), Expect = 0.038
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16   TVYISFSNYFHEKIKPIP-LELNYSPEEGDKTTITNACCFLHQGKLFRPQLLSAKQRVT 189
            ++++ +SN  H K+K +P + +     + DK    NA  F  Q  LFRP L+  K  +T
Sbjct: 2507 SLFVDYSNLLHSKVKSVPNMHVVVVENDADKANFLNAAVFYAQ-SLFRPILMVDKILIT 2564

>NRK2_MOUSE (Q9D7C9) Nicotinamide riboside kinase 2 (EC 2.7.1.-) (Integrin|
           beta-1-binding protein 3) (Muscle integrin-binding
           protein) (MIBP)
          Length = 195

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
 Frame = +1

Query: 97  GDKTTITNA-------CCFLHQGKLFRPQ 162
           G KTT+TN+       CC +HQ   F+PQ
Sbjct: 13  GGKTTLTNSLLKALPNCCVIHQDDFFKPQ 41

>NRK2_HUMAN (Q9NPI5) Nicotinamide riboside kinase 2 (EC 2.7.1.-) (Integrin|
           beta-1-binding protein 3) (Muscle integrin-binding
           protein) (MIBP)
          Length = 230

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
 Frame = +1

Query: 97  GDKTTITNA-------CCFLHQGKLFRPQ 162
           G KTT+TN+       CC +HQ   F+PQ
Sbjct: 13  GGKTTLTNSLLRALPNCCVIHQDDFFKPQ 41


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,349,598
Number of Sequences: 219361
Number of extensions: 731416
Number of successful extensions: 1960
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)