ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet94a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_148434.2| Arabidopsis thaliana transcription factor AT1G0... 42 0.96
2gb|AF499443.1| Arabidopsis thaliana p44/SSL1-like protein mRNA, ... 42 0.96
3emb|BX816023.1|CNS0AD5T Arabidopsis thaliana Full-length cDNA Co... 42 0.96
4gb|AC005322.2|T7A14 Arabidopsis thaliana chromosome 1 BAC T7A14 ... 42 0.96
5ref|XM_788291.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.8
6gb|AC051642.5| Homo sapiens chromosome 8, clone RP11-583M2, comp... 40 3.8
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
8dbj|AP003724.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8

>ref|NM_148434.2| Arabidopsis thaliana transcription factor AT1G05055 mRNA, complete
           cds
          Length = 1464

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 189 ccaaacatgtcgaagctttca 209
           |||||||||||||||||||||
Sbjct: 327 ccaaacatgtcgaagctttca 347



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>gb|AF499443.1| Arabidopsis thaliana p44/SSL1-like protein mRNA, complete cds
          Length = 1266

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 189 ccaaacatgtcgaagctttca 209
           |||||||||||||||||||||
Sbjct: 323 ccaaacatgtcgaagctttca 343



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>emb|BX816023.1|CNS0AD5T Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH23ZE02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1333

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 189 ccaaacatgtcgaagctttca 209
           |||||||||||||||||||||
Sbjct: 311 ccaaacatgtcgaagctttca 331



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>gb|AC005322.2|T7A14 Arabidopsis thaliana chromosome 1 BAC T7A14 sequence, complete sequence
          Length = 54157

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 189   ccaaacatgtcgaagctttca 209
             |||||||||||||||||||||
Sbjct: 26424 ccaaacatgtcgaagctttca 26444



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>ref|XM_788291.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9907-PA
           (LOC588616), mRNA
          Length = 5586

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 47  acgaaaaaatcaaaccaattccac 70
           ||||||||||| ||||||||||||
Sbjct: 530 acgaaaaaatccaaccaattccac 507



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>gb|AC051642.5| Homo sapiens chromosome 8, clone RP11-583M2, complete sequence
          Length = 174445

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    acaccaaggcaaacttttta 154
              ||||||||||||||||||||
Sbjct: 117528 acaccaaggcaaacttttta 117547



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 140      aaggcaaactttttaggccc 159
                ||||||||||||||||||||
Sbjct: 22453906 aaggcaaactttttaggccc 22453887



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>dbj|AP003724.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0498C03
          Length = 146394

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   aaggcaaactttttaggccc 159
             ||||||||||||||||||||
Sbjct: 91039 aaggcaaactttttaggccc 91020


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,450,150
Number of Sequences: 3902068
Number of extensions: 2450150
Number of successful extensions: 45126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45104
Number of HSP's gapped (non-prelim): 22
length of query: 289
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 267
effective length of database: 17,147,199,772
effective search space: 4578302339124
effective search space used: 4578302339124
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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