ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet94a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC097174.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.29
2gb|AC141927.3| Mus musculus BAC clone RP23-237F16 from chromosom... 42 0.29
3gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete s... 42 0.29
4gb|AC161938.2| Mus musculus 6 BAC RP24-162E3 (Roswell Park Cance... 42 0.29
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.29
6gb|AC090437.62| Mus musculus strain C57BL/6J clone rp23-11f20 ma... 40 1.1
7gb|AC122536.4| Mus musculus BAC clone RP24-542K22 from chromosom... 40 1.1
8gb|AC134603.4| Mus musculus BAC clone RP23-246L24 from chromosom... 40 1.1
9gb|AC006971.2| Homo sapiens PAC clone RP4-791C19 from 7, complet... 40 1.1
10emb|AL683870.15| Human DNA sequence from clone RP11-261P4 on chr... 40 1.1
11emb|AL137222.17| Human DNA sequence from clone RP1-209B5 on chro... 40 1.1
12emb|CR846083.9| Zebrafish DNA sequence from clone DKEYP-34A6 in ... 40 1.1
13emb|BX294444.7| Zebrafish DNA sequence from clone CH211-281E15 i... 40 1.1
14gb|AE014175.1| Mus musculus piebald deletion region section 3 of... 40 1.1
15gb|AC021203.5| Homo sapiens BAC clone RP11-143E9 from 4, complet... 40 1.1
16gb|AC092725.3| Homo sapiens chromosome 16 clone RP11-673P17, com... 40 1.1
17gb|AC102815.31| Mus musculus chromosome 14, clone RP23-55A5, com... 40 1.1
18emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chr... 40 1.1
19emb|AL589876.11| Mouse DNA sequence from clone RP23-117O11 on ch... 40 1.1
20gb|AC131995.14| Mus musculus chromosome 1, clone RP24-338G10, co... 38 4.5
21gb|AC113065.16| Mus musculus chromosome 7, clone RP23-263E7, com... 38 4.5
22gb|AC159891.2| Mus musculus BAC clone RP23-394E10 from chromosom... 38 4.5
23gb|AC146521.2| Oryza sativa chromosome 3 B1246D11 genomic seque... 38 4.5
24gb|AC115880.11| Mus musculus chromosome 9, clone RP24-365N15, co... 38 4.5
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 4.5
26gb|AC163690.4| Mus musculus BAC clone RP23-470F9 from chromosome... 38 4.5
27gb|AC121972.2| Mus musculus BAC clone RP24-276H18 from 2, comple... 38 4.5
28emb|AL161430.19| Human DNA sequence from clone RP11-419D4 on chr... 38 4.5
29emb|AL160032.14| Human DNA sequence from clone RP11-474L7 on chr... 38 4.5
30gb|AC160632.5| Mus musculus chromosome 8, clone RP24-319F9, comp... 38 4.5
31gb|AC146691.5| Macaca mulatta clone ch250-214a10, complete sequence 38 4.5
32gb|AC021590.10| Homo sapiens chromosome 8, clone RP11-143H8, com... 38 4.5
33emb|BX649412.8| Zebrafish DNA sequence from clone DKEY-116G10 in... 38 4.5
34gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genom... 38 4.5
35dbj|AK045185.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 38 4.5
36gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7,... 38 4.5
37dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
38dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
39dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
41gb|AC116628.4| Homo sapiens BAC clone RP11-369F24 from 2, comple... 38 4.5
42gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470... 38 4.5
43gb|AC132153.2| Homo sapiens BAC clone RP11-111G13 from 2, comple... 38 4.5
44gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Canc... 38 4.5
45dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
46gb|AC008080.1|AC008080 Homo sapiens clone RP11-89N17 from 7p14-1... 38 4.5
47emb|BX545905.9| Mouse DNA sequence from clone RP23-339J7 on chro... 38 4.5
48dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
49dbj|AP006615.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
50dbj|AP005754.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
51dbj|AP005933.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
52emb|BX248410.4| Zebrafish DNA sequence from clone DKEY-65M5 in l... 38 4.5
53gb|AC164521.6| Mus musculus chromosome 7, clone RP24-287F19, com... 38 4.5
54dbj|AP001982.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 4.5
55dbj|AP003474.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 4.5
56gb|AC102493.8| Mus musculus chromosome 8, clone RP24-546F2, comp... 38 4.5
57gb|AC140377.4| Mus musculus BAC clone RP24-84K14 from chromosome... 38 4.5
58gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
59emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb... 38 4.5
60gb|AC132304.3| Mus musculus BAC clone RP24-284M17 from 10, compl... 38 4.5
61emb|AL833771.4| Mouse DNA sequence from clone RP23-228H14 on chr... 38 4.5
62gb|AC101903.7| Mus musculus chromosome 1, clone RP24-227M18, com... 38 4.5
63dbj|AP004219.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 4.5
64emb|AL669925.8| Mouse DNA sequence from clone RP23-174D24 on chr... 38 4.5
65dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5 
>gb|AC097174.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1111_A10,
             complete sequence
          Length = 155106

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     tccatccatgcatgcatgttt 27
             |||||||||||||||||||||
Sbjct: 49330 tccatccatgcatgcatgttt 49350
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>gb|AC141927.3| Mus musculus BAC clone RP23-237F16 from chromosome 6, complete sequence
          Length = 186452

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     ccctccatccatgcatgcatg 24
             |||||||||||||||||||||
Sbjct: 29430 ccctccatccatgcatgcatg 29450
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>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence
          Length = 135659

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     catccatgcatgcatgtttgt 29
             |||||||||||||||||||||
Sbjct: 26418 catccatgcatgcatgtttgt 26438
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>gb|AC161938.2| Mus musculus 6 BAC RP24-162E3 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 163330

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     ccctccatccatgcatgcatg 24
             |||||||||||||||||||||
Sbjct: 87341 ccctccatccatgcatgcatg 87321
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 7       tccatccatgcatgcatgttt 27
               |||||||||||||||||||||
Sbjct: 5134827 tccatccatgcatgcatgttt 5134847
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>gb|AC090437.62| Mus musculus strain C57BL/6J clone rp23-11f20 map 6, complete sequence
          Length = 227127

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      cctccatccatgcatgcatg 24
              ||||||||||||||||||||
Sbjct: 208678 cctccatccatgcatgcatg 208659
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>gb|AC122536.4| Mus musculus BAC clone RP24-542K22 from chromosome 17, complete
             sequence
          Length = 150022

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tatttcatgcatgttatgaa 88
             ||||||||||||||||||||
Sbjct: 26519 tatttcatgcatgttatgaa 26500
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>gb|AC134603.4| Mus musculus BAC clone RP23-246L24 from chromosome 7, complete sequence
          Length = 229312

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    atgcatgcatgtttgtttat 33
             ||||||||||||||||||||
Sbjct: 77830 atgcatgcatgtttgtttat 77849
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>gb|AC006971.2| Homo sapiens PAC clone RP4-791C19 from 7, complete sequence
          Length = 115861

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    atgtttgtttattccaaaaa 41
             ||||||||||||||||||||
Sbjct: 85342 atgtttgtttattccaaaaa 85323
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>emb|AL683870.15| Human DNA sequence from clone RP11-261P4 on chromosome X Contains the 3'
              end of the IL3RA gene for interleukin 3 receptor, alpha
              (low affinity) (IL3R, CD123, IL3RX, IL3RY, IL3RAY, hIL-3Ra,
              MGC34174), the SLC25A6 gene for solute carrier family 25
              (mitochondrial carrier; adenine nucleotide translocator),
              member 6 (ANT3, ANT3Y, MGC17525), the ASMTL gene for
              acetylserotonin O-methyltransferase-like (ASMTLX), a novel
              gene (LOC286530), a novel gene (FLJ13330) and six CpG
              islands, complete sequence
          Length = 162377

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      ccctccatccatgcatgcat 23
              ||||||||||||||||||||
Sbjct: 145331 ccctccatccatgcatgcat 145350
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>emb|AL137222.17| Human DNA sequence from clone RP1-209B5 on chromosome 6 Contains the 5'
             end of the AKAP7 gene for A kinase (PRKA) anchor protein
             7, a zinc finger pseudogene and a CpG island, complete
             sequence
          Length = 110724

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    atgcatgcatgtttgtttat 33
             ||||||||||||||||||||
Sbjct: 21264 atgcatgcatgtttgtttat 21245
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>emb|CR846083.9| Zebrafish DNA sequence from clone DKEYP-34A6 in linkage group 14,
             complete sequence
          Length = 163337

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    tgcatgcatgtttgtttatt 34
             ||||||||||||||||||||
Sbjct: 12695 tgcatgcatgtttgtttatt 12676
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>emb|BX294444.7| Zebrafish DNA sequence from clone CH211-281E15 in linkage group 14,
             complete sequence
          Length = 169694

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    tgcatgcatgtttgtttatt 34
             ||||||||||||||||||||
Sbjct: 14708 tgcatgcatgtttgtttatt 14689
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>gb|AE014175.1| Mus musculus piebald deletion region section 3 of 11 of the complete
             sequence
          Length = 404829

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    tgcatgcatgtttgtttatt 34
             ||||||||||||||||||||
Sbjct: 40616 tgcatgcatgtttgtttatt 40597
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>gb|AC021203.5| Homo sapiens BAC clone RP11-143E9 from 4, complete sequence
          Length = 142218

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     atgcatgcatgtttgtttat 33
              ||||||||||||||||||||
Sbjct: 112286 atgcatgcatgtttgtttat 112267
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>gb|AC092725.3| Homo sapiens chromosome 16 clone RP11-673P17, complete sequence
          Length = 205399

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    aaaaacccatacaaaccaat 56
             ||||||||||||||||||||
Sbjct: 78154 aaaaacccatacaaaccaat 78173
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>gb|AC102815.31| Mus musculus chromosome 14, clone RP23-55A5, complete sequence
          Length = 151802

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     tgcatgcatgtttgtttatt 34
              ||||||||||||||||||||
Sbjct: 100305 tgcatgcatgtttgtttatt 100286
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>emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chromosome 11, complete
             sequence
          Length = 201673

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ccctccatccatgcatgcat 23
             ||||||||||||||||||||
Sbjct: 22811 ccctccatccatgcatgcat 22830
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>emb|AL589876.11| Mouse DNA sequence from clone RP23-117O11 on chromosome 2, complete
             sequence
          Length = 221782

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     cctccatccatgcatgcatg 24
             ||||||||||||||||||||
Sbjct: 73420 cctccatccatgcatgcatg 73439
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>gb|AC131995.14| Mus musculus chromosome 1, clone RP24-338G10, complete sequence
          Length = 153731

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 13     catgcatgcatgtttgttt 31
              |||||||||||||||||||
Sbjct: 100292 catgcatgcatgtttgttt 100310
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>gb|AC113065.16| Mus musculus chromosome 7, clone RP23-263E7, complete sequence
          Length = 202134

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 36   caaaaacccatacaaacca 54
            |||||||||||||||||||
Sbjct: 4646 caaaaacccatacaaacca 4628
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>gb|AC159891.2| Mus musculus BAC clone RP23-394E10 from chromosome 9, complete sequence
          Length = 178766

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      tccatccatgcatgcatgt 25
              |||||||||||||||||||
Sbjct: 140262 tccatccatgcatgcatgt 140244
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>gb|AC146521.2| Oryza sativa chromosome 3  B1246D11 genomic sequence, complete sequence
          Length = 43277

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     cctccatccatgcatgcat 23
             |||||||||||||||||||
Sbjct: 11766 cctccatccatgcatgcat 11748
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>gb|AC115880.11| Mus musculus chromosome 9, clone RP24-365N15, complete sequence
          Length = 202851

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    tgcatgcatgtttgtttat 33
             |||||||||||||||||||
Sbjct: 64883 tgcatgcatgtttgtttat 64865
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 9        catccatgcatgcatgttt 27
                |||||||||||||||||||
Sbjct: 21123937 catccatgcatgcatgttt 21123919



 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 5        cctccatccatgcatgcat 23
                |||||||||||||||||||
Sbjct: 15175301 cctccatccatgcatgcat 15175319
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>gb|AC163690.4| Mus musculus BAC clone RP23-470F9 from chromosome 1, complete sequence
          Length = 210131

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 13     catgcatgcatgtttgttt 31
              |||||||||||||||||||
Sbjct: 198168 catgcatgcatgtttgttt 198186
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>gb|AC121972.2| Mus musculus BAC clone RP24-276H18 from 2, complete sequence
          Length = 193641

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    tgcatgcatgtttgtttat 33
             |||||||||||||||||||
Sbjct: 95561 tgcatgcatgtttgtttat 95543
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>emb|AL161430.19| Human DNA sequence from clone RP11-419D4 on chromosome 13 Contains the 5'
              end of the gene for muscleblind-like protein (MBLL39) and a
              CpG island, complete sequence
          Length = 159191

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     ttccaaaaacccatacaaa 51
              |||||||||||||||||||
Sbjct: 129753 ttccaaaaacccatacaaa 129735
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>emb|AL160032.14| Human DNA sequence from clone RP11-474L7 on chromosome 13 Contains the
             3' end of the KLF12 gene for Kruppel-like factor 12, a
             novel gene and the 5' end of a novel gene and a CpG
             island, complete sequence
          Length = 181324

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     ctccatccatgcatgcatg 24
             |||||||||||||||||||
Sbjct: 30676 ctccatccatgcatgcatg 30694
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>gb|AC160632.5| Mus musculus chromosome 8, clone RP24-319F9, complete sequence
          Length = 163311

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    tgcatgcatgtttgtttat 33
             |||||||||||||||||||
Sbjct: 25889 tgcatgcatgtttgtttat 25871
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>gb|AC146691.5| Macaca mulatta clone ch250-214a10, complete sequence
          Length = 152056

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    ccatgcatgcatgtttgtt 30
             |||||||||||||||||||
Sbjct: 85493 ccatgcatgcatgtttgtt 85475
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>gb|AC021590.10| Homo sapiens chromosome 8, clone RP11-143H8, complete sequence
          Length = 171427

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 13     catgcatgcatgtttgttt 31
              |||||||||||||||||||
Sbjct: 114302 catgcatgcatgtttgttt 114284
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>emb|BX649412.8| Zebrafish DNA sequence from clone DKEY-116G10 in linkage group 1,
             complete sequence
          Length = 78932

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    catgcatgcatgtttgttt 31
             |||||||||||||||||||
Sbjct: 39314 catgcatgcatgtttgttt 39332
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>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete
              sequence
          Length = 131250

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      catccatgcatgcatgttt 27
              |||||||||||||||||||
Sbjct: 101693 catccatgcatgcatgttt 101675
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>dbj|AK045185.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
           enriched library, clone:B130044D17 product:similar to L1
           RETROTRANSPOSON ORF2 (FRAGMENT) [Rattus norvegicus],
           full insert sequence
          Length = 1291

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 15  tgcatgcatgtttgtttat 33
           |||||||||||||||||||
Sbjct: 565 tgcatgcatgtttgtttat 583
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>gb|AC004863.5|AC004863 Homo sapiens PAC clone RP4-708P22 from 7, complete sequence
          Length = 133030

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     cctccatccatgcatgcat 23
             |||||||||||||||||||
Sbjct: 78471 cctccatccatgcatgcat 78489
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 13      catgcatgcatgtttgttt 31
               |||||||||||||||||||
Sbjct: 2485889 catgcatgcatgtttgttt 2485907
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 5       cctccatccatgcatgcatgtttgttt 31
               |||| ||||||||||||| ||||||||
Sbjct: 7072106 cctcaatccatgcatgcacgtttgttt 7072132



 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 5       cctccatccatgcatgcatgtttgttt 31
               |||| ||||||||||||| ||||||||
Sbjct: 6778453 cctcaatccatgcatgcacgtttgttt 6778479
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 9        catccatgcatgcatgttt 27
                |||||||||||||||||||
Sbjct: 21116966 catccatgcatgcatgttt 21116948



 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 5        cctccatccatgcatgcat 23
                |||||||||||||||||||
Sbjct: 15169835 cctccatccatgcatgcat 15169853
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 5        cctccatccatgcatgcat 23
                |||||||||||||||||||
Sbjct: 37931388 cctccatccatgcatgcat 37931370
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>gb|AC116628.4| Homo sapiens BAC clone RP11-369F24 from 2, complete sequence
          Length = 107755

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    tttgtttattccaaaaacc 43
             |||||||||||||||||||
Sbjct: 21884 tttgtttattccaaaaacc 21902
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>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4,
              complete sequence
          Length = 541399

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     ttccaaaaacccatacaaa 51
              |||||||||||||||||||
Sbjct: 446717 ttccaaaaacccatacaaa 446735
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>gb|AC132153.2| Homo sapiens BAC clone RP11-111G13 from 2, complete sequence
          Length = 154924

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    tttgtttattccaaaaacc 43
             |||||||||||||||||||
Sbjct: 22051 tttgtttattccaaaaacc 22033
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>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 166966

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 37   aaaaacccatacaaaccaattaa 59
            ||||||||||| |||||||||||
Sbjct: 7549 aaaaacccatagaaaccaattaa 7527
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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A10
          Length = 137348

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     cctccatccatgcatgcat 23
             |||||||||||||||||||
Sbjct: 12332 cctccatccatgcatgcat 12314
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>gb|AC008080.1|AC008080 Homo sapiens clone RP11-89N17 from 7p14-15, complete sequence
          Length = 178635

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     ccatccatgcatgcatgtt 26
             |||||||||||||||||||
Sbjct: 56895 ccatccatgcatgcatgtt 56913
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>emb|BX545905.9| Mouse DNA sequence from clone RP23-339J7 on chromosome 2, complete
             sequence
          Length = 128574

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    tgcatgcatgtttgtttat 33
             |||||||||||||||||||
Sbjct: 40894 tgcatgcatgtttgtttat 40876
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>dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0002E10
          Length = 140486

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 5     cctccatccatgcatgcatgtttgttt 31
             |||| ||||||||||||| ||||||||
Sbjct: 29172 cctcaatccatgcatgcacgtttgttt 29198
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>dbj|AP006615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1165C09
          Length = 202985

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 5      cctccatccatgcatgcatgtttgttt 31
              |||| ||||||||||||| ||||||||
Sbjct: 190154 cctcaatccatgcatgcacgtttgttt 190180
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>dbj|AP005754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0089L03
          Length = 172106

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 5      cctccatccatgcatgcatgtttgttt 31
              |||| ||||||||||||| ||||||||
Sbjct: 130855 cctcaatccatgcatgcacgtttgttt 130881
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>dbj|AP005933.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0674B07
          Length = 192191

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 5      cctccatccatgcatgcatgtttgttt 31
              |||| ||||||||||||| ||||||||
Sbjct: 117592 cctcaatccatgcatgcacgtttgttt 117618
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>emb|BX248410.4| Zebrafish DNA sequence from clone DKEY-65M5 in linkage group 4, complete
              sequence
          Length = 250665

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 13     catgcatgcatgtttgttt 31
              |||||||||||||||||||
Sbjct: 224672 catgcatgcatgtttgttt 224690
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>gb|AC164521.6| Mus musculus chromosome 7, clone RP24-287F19, complete sequence
          Length = 66665

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 36    caaaaacccatacaaacca 54
             |||||||||||||||||||
Sbjct: 36457 caaaaacccatacaaacca 36439
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>dbj|AP001982.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-344F5, complete
             sequence
          Length = 137996

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 27    tgtttattccaaaaacccataca 49
             ||||||||| |||||||||||||
Sbjct: 99746 tgtttattcaaaaaacccataca 99768
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>dbj|AP003474.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1942A3, complete
             sequence
          Length = 165901

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    catgcatgcatgtttgttt 31
             |||||||||||||||||||
Sbjct: 37678 catgcatgcatgtttgttt 37660
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>gb|AC102493.8| Mus musculus chromosome 8, clone RP24-546F2, complete sequence
          Length = 175883

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    tgcatgcatgtttgtttat 33
             |||||||||||||||||||
Sbjct: 87025 tgcatgcatgtttgtttat 87007
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>gb|AC140377.4| Mus musculus BAC clone RP24-84K14 from chromosome 7, complete sequence
          Length = 246043

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    caaaaacccatacaaacca 54
             |||||||||||||||||||
Sbjct: 39562 caaaaacccatacaaacca 39580
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 13      catgcatgcatgtttgttt 31
               |||||||||||||||||||
Sbjct: 2485833 catgcatgcatgtttgttt 2485851
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>emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb0050K10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 122901

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    catgcatgcatgtttgttt 31
             |||||||||||||||||||
Sbjct: 57603 catgcatgcatgtttgttt 57585
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>gb|AC132304.3| Mus musculus BAC clone RP24-284M17 from 10, complete sequence
          Length = 191906

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     tttgtttattccaaaaacc 43
              |||||||||||||||||||
Sbjct: 164096 tttgtttattccaaaaacc 164114
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>emb|AL833771.4| Mouse DNA sequence from clone RP23-228H14 on chromosome 2, complete
             sequence
          Length = 189283

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 35    ccaaaaacccatacaaaccaatt 57
             ||||| |||||||||||||||||
Sbjct: 58701 ccaaacacccatacaaaccaatt 58679
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>gb|AC101903.7| Mus musculus chromosome 1, clone RP24-227M18, complete sequence
          Length = 172143

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     tgcatgcatgtttgtttat 33
              |||||||||||||||||||
Sbjct: 135510 tgcatgcatgtttgtttat 135492
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>dbj|AP004219.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1222D11, complete
             sequence
          Length = 159712

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    catgcatgcatgtttgttt 31
             |||||||||||||||||||
Sbjct: 99636 catgcatgcatgtttgttt 99618
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>emb|AL669925.8| Mouse DNA sequence from clone RP23-174D24 on chromosome 11, complete
            sequence
          Length = 69520

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 15   tgcatgcatgtttgtttat 33
            |||||||||||||||||||
Sbjct: 9913 tgcatgcatgtttgtttat 9895
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>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0648C09
          Length = 107522

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     cctccatccatgcatgcat 23
             |||||||||||||||||||
Sbjct: 27664 cctccatccatgcatgcat 27646


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,168,628
Number of Sequences: 3902068
Number of extensions: 1168628
Number of successful extensions: 101366
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100584
Number of HSP's gapped (non-prelim): 779
length of query: 101
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 80
effective length of database: 17,151,101,840
effective search space: 1372088147200
effective search space used: 1372088147200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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