ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet93h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAS17_YEAST (Q12446) Proline-rich protein LAS17 37 0.016
2NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr... 28 4.4
3NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr... 28 4.4
4NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fr... 28 5.7
5HYIN1_AGRVI (Q04557) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH... 28 5.7
6CD2L7_CAEEL (P46551) Putative cell division cycle 2-related prot... 25 7.1
7CYTSA_TETNG (Q2KN95) Cytospin-A 28 7.5
8AGLU_SPIOL (O04893) Alpha-glucosidase precursor (EC 3.2.1.20) (M... 28 7.5
9RL4_HALMA (P12735) 50S ribosomal protein L4P (Hmal4) (Hl6) 28 7.5
10CYTSA_FUGRU (Q2KN94) Cytospin-A 28 7.5
11ZO3_CANFA (O62683) Tight junction protein ZO-3 (Zonula occludens... 27 9.8
12NRIP1_MOUSE (Q8CBD1) Nuclear receptor-interacting protein 1 (Nuc... 27 9.8

>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 169 RRCRQAHTPRRDGRFENY---YSVRGRDTIHVRAHQQPPPPPHDRSTMNSDKIPSMA 330
           ++ +  H PR +   +N    Y+    DTI    H+ PPPPP    T +SD+  S +
Sbjct: 148 QKSQVVHGPRGESLIDNQRKRYNYEDVDTIPTTKHKAPPPPPPTAETFDSDQTSSFS 204



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>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 178 RQAHTPRRDGRFENYYSVRGRDTIHVRAHQQPPPPP 285
           +Q HTPR+      ++    +   H +  QQPPPPP
Sbjct: 11  KQNHTPRK------HHQHHHQQQHHQQQQQQPPPPP 40



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>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 178 RQAHTPRRDGRFENYYSVRGRDTIHVRAHQQPPPPP 285
           +Q HTPR+      ++    +   H +  QQPPPPP
Sbjct: 11  KQNHTPRK------HHQHHHQQQHHQQQQQQPPPPP 40



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>NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)|
          Length = 434

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
 Frame = +1

Query: 247 IHVRAHQQPP---PPPHDRSTMN 306
           +H  +H++PP   PPPH++S M+
Sbjct: 267 VHPPSHEKPPFVYPPPHEKSPMH 289



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>HYIN1_AGRVI (Q04557) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)|
           (Indole-3-acetamide hydrolase)
          Length = 462

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 169 RRCRQAHTPRRDGRFENYYSVRGRDTI 249
           RR  + + PR    +ENYYS  G D +
Sbjct: 346 RRALRCYKPRLKATYENYYSSNGLDAV 372



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>CD2L7_CAEEL (P46551) Putative cell division cycle 2-related protein kinase 7|
           (EC 2.7.11.22)
          Length = 730

 Score = 24.6 bits (52), Expect(2) = 7.1
 Identities = 10/40 (25%), Positives = 16/40 (40%)
 Frame = +2

Query: 167 GDAAGRHTHRGETADLRTITACAAETRSTYARTSNHHHHH 286
           G +   H+ R  +            T+S  +   +HHHHH
Sbjct: 644 GSSGSGHSIRATSHPRAPTQPSTTTTKSNGSSNHHHHHHH 683



 Score = 21.6 bits (44), Expect(2) = 7.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 262 HQQPPPPPHDRSTMNS 309
           H  PPPPP  +++  S
Sbjct: 697 HAPPPPPPPTQASSTS 712



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>CYTSA_TETNG (Q2KN95) Cytospin-A|
          Length = 1113

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 164 FKSASFSQYSTCCTTFPTFCIVPVPRTPFNPA 69
           F SAS    S+  +  PT    P+PRTP +P+
Sbjct: 832 FDSASQGPPSSGASVTPTASAAPLPRTPLSPS 863



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>AGLU_SPIOL (O04893) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase)|
          Length = 903

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 262 HQQPPPPPHDRSTM 303
           HQ PPPPPH  S++
Sbjct: 109 HQPPPPPPHSLSSL 122



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>RL4_HALMA (P12735) 50S ribosomal protein L4P (Hmal4) (Hl6)|
          Length = 246

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 181 QAHTPRRDGRFENY-YSVRGRDTIHVRAHQQPPPPPHDRSTMNSDKIPSMA 330
           QAH P++DGR      +V+GR      AH  PP    DRS   +DK   +A
Sbjct: 67  QAHVPKQDGRARRVPQAVKGRS-----AH--PPKTEKDRSLDLNDKERQLA 110



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>CYTSA_FUGRU (Q2KN94) Cytospin-A|
          Length = 1118

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 164 FKSASFSQYSTCCTTFPTFCIVPVPRTPFNPA 69
           F SAS    S   +  PT    P+PRTP +P+
Sbjct: 837 FDSASQGPPSNGASVTPTVSAAPLPRTPLSPS 868



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>ZO3_CANFA (O62683) Tight junction protein ZO-3 (Zonula occludens 3 protein)|
           (Zona occludens 3 protein) (Tight junction protein 3)
          Length = 898

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 202 DGRFENYYSVRGRDTIHVRAHQQPPPPPHDRSTMNSD 312
           D  F +  S  G +         PPPPPH + +++SD
Sbjct: 281 DSSFLDDISALGSELSQAVPSHVPPPPPHAQRSLDSD 317



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>NRIP1_MOUSE (Q8CBD1) Nuclear receptor-interacting protein 1 (Nuclear factor|
           RIP140) (Receptor-interacting protein 140)
          Length = 1161

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 247 SCLGRARCNSSQI-CRLSSVCVPAGSVACSSLRVSVSIVPAVLLSLPFALYQYHARHLIQ 71
           SC  R +  +S +  R S    P  SVACS L        A+LLS    L QY   H ++
Sbjct: 236 SCAARLQAVASMVEKRASPAASPKPSVACSQL--------ALLLSSEAHLQQYSREHALK 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,794,343
Number of Sequences: 219361
Number of extensions: 917605
Number of successful extensions: 4673
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4214
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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