ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet93f01 |
|---|---|
| Clone Library Name | barley_pub |
>CHIT1_HUMAN (Q13231) Chitotriosidase-1 precursor (EC 3.2.1.14) (Chitinase-1)| Length = 466 Score = 34.3 bits (77), Expect = 0.076 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Frame = +3 Query: 24 IVHLIDWINEFSHTTHNGEQEKLTGHNSS-QQCQKSCRFRAHASIDKVLERKAWKG-HSS 197 I +D++N ++ H G EK+TGHNS + Q+ A ++D +++ KG +S Sbjct: 200 IAQNLDFVNLMAYDFH-GSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPAS 258 Query: 198 KLLLGNP 218 KL+LG P Sbjct: 259 KLILGMP 265
>SAP3B_XENLA (Q6NRF1) SAPS domain family member 3-B| Length = 850 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +1 Query: 199 SFCSGTLTSTNKINITWSKKKAHDHLSNDDEV 294 +FC+ +L+ TNK N H H S+DDE+ Sbjct: 498 TFCTSSLSETNKRNTVDLVTTRHIHSSSDDEI 529
>OVGP1_PIG (Q28990) Oviduct-specific glycoprotein precursor (Oviductal| glycoprotein) (Oviductin) (Estrogen-dependent oviduct protein) (POSP-E3) Length = 527 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +3 Query: 33 LIDWINEFSHTTHNGEQEKLTGHNS 107 L+D+IN S+ H G EK+TGHNS Sbjct: 204 LLDFINVLSYDLH-GSWEKVTGHNS 227
>RPTN_MOUSE (P97347) Repetin| Length = 1130 Score = 29.6 bits (65), Expect = 1.9 Identities = 11/43 (25%), Positives = 26/43 (60%) Frame = +3 Query: 57 SHTTHNGEQEKLTGHNSSQQCQKSCRFRAHASIDKVLERKAWK 185 S+ H+G KL+ NS ++ +++ R+H ++ ++++ WK Sbjct: 886 SYVEHSGRSGKLSQQNSREEVRQTQSQRSHDRREQQIQQQTWK 928
>SAPS3_HUMAN (Q5H9R7) SAPS domain family member 3 (Sporulation-induced| transcript 4-associated protein SAPL) (Protein phosphatase 6 regulatory subunit 3) Length = 873 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 199 SFCSGTLTSTNKINITWSKKKAHDHLSNDDEV 294 +FC+ +L TNK N H H S+DDE+ Sbjct: 498 TFCTSSLGETNKRNTVDLVTTCHIHSSSDDEI 529
>SAPS3_CHICK (Q5F471) SAPS domain family member 3| Length = 873 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 199 SFCSGTLTSTNKINITWSKKKAHDHLSNDDEV 294 +FC+ +L TNK N H H S+DDE+ Sbjct: 498 TFCTSSLGETNKRNTVDLVTTCHIHSSSDDEI 529
>CAPP4_ARATH (Q8GVE8) Phosphoenolpyruvate carboxylase 4 (EC 4.1.1.31) (PEPCase| 4) (PEPC 4) (AtPPC4) Length = 1032 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +3 Query: 36 IDWINEFSHTTHNGEQEKLTGHNSS 110 IDW E HNG QE + G++ S Sbjct: 673 IDWYREHIQKNHNGHQEVMVGYSDS 697
>SAP3A_XENLA (Q6NRI0) SAPS domain family member 3-A| Length = 852 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 199 SFCSGTLTSTNKINITWSKKKAHDHLSNDDEV 294 +FC+ +L TNK N H H S+DDE+ Sbjct: 498 TFCTSSLGETNKRNTVDLVTTRHIHSSSDDEI 529
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Frame = -3 Query: 226 WR*GFPSKSLLECPFH-ALRSRTLSMDACALNRQLF*HCWDELCPVNFSCSP 74 W FP K LL+C + LR +S+ C+ CW ++ V +C P Sbjct: 60 WSRNFPEKILLDCRYELQLRGAAISLSGCSQ------ECWKDV--VQKACCP 103
>PLCB4_HUMAN (Q15147) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) Length = 1175 Score = 28.5 bits (62), Expect = 4.2 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +3 Query: 30 HLIDWINEFSHTTHNGEQEKLTGHNSSQQCQ--KSCRFRAHASIDKVL------ERKAWK 185 H +W + TH+ E++++ + SQQC+ K AH + L E K + Sbjct: 1020 HTKEWSEMIN--THSAEEQEIRDLHLSQQCELLKKLLINAHEQQTQQLKLSHDRESKEMR 1077 Query: 186 GHSSKLLLGNPHLHKQD 236 H +K+ + N QD Sbjct: 1078 AHQAKISMENSKAISQD 1094
>EG51_XENLA (P28025) Kinesin-related motor protein Eg5 1| Length = 1060 Score = 28.5 bits (62), Expect = 4.2 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +3 Query: 84 EKLTG--HNSSQQCQKSCRFRAHASIDKVLERKAWKGHSSKLLLGNPHLHKQD 236 EKLT + SQ+ Q+ C A ID VLE + HSSK L N H +D Sbjct: 806 EKLTSSINTISQESQQWCE-SAGQKIDSVLEEQVCYLHSSKKHLQNLHKGVED 857
>MBN3_MOUSE (Q8R003) Muscleblind-like X-linked protein (Muscleblind-like| protein 3) (Cys3His CCG1-required protein) (MCHCR protein) Length = 342 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -1 Query: 231 VCGGEGSRAKAC*SALSMLCVLELCQWMHVP 139 VC E R AC +L C E C+++H P Sbjct: 43 VCHVENGRVVACFDSLKGRCTRENCKYLHPP 73
>GP149_CHICK (Q9DDD1) Probable G-protein coupled receptor 149 (G-protein coupled| receptor R35) Length = 723 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = -1 Query: 180 MLCVLELCQW-MHVP*IGSSFDIVGMSYALSIFLVLRCVLC 61 ++C+L LC W ++P F SY L +F+V C Sbjct: 162 LICILPLCGWGKYIPTTWGCFTDHASSYILFLFIVYSLCFC 202
>MBN3_HUMAN (Q9NUK0) Muscleblind-like X-linked protein (Muscleblind-like| protein 3) (Cys3His CCG1-required protein) (HCHCR protein) Length = 354 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -1 Query: 231 VCGGEGSRAKAC*SALSMLCVLELCQWMHVP 139 VC E R AC +L C E C+++H P Sbjct: 43 VCHVENGRVVACFDSLKGRCTRENCKYLHPP 73
>OVGP1_BOVIN (Q28042) Oviduct-specific glycoprotein precursor (Oviductal| glycoprotein) (Oviductin) (Estrogen-dependent oviduct protein) (Fragment) Length = 537 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +3 Query: 33 LIDWINEFSHTTHNGEQEKLTGHNS 107 L+D+I+ S+ H G EK+TGHNS Sbjct: 201 LLDFISVLSYDLH-GSWEKVTGHNS 224
>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1| Length = 881 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +1 Query: 199 SFCSGTLTSTNKINITWSKKKAHDHLSNDDE 291 +F SG L TNK N+ H H S+DDE Sbjct: 504 AFVSGPLAETNKKNMVDLVNTHHLHSSSDDE 534
>OVGP1_SHEEP (Q28542) Oviduct-specific glycoprotein precursor (Oviductal| glycoprotein) (Oviductin) (Estrogen-dependent oviduct protein) (Estrus-associated oviducal glycoprotein) (OEGP) Length = 539 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +3 Query: 33 LIDWINEFSHTTHNGEQEKLTGHNS 107 L+D+I+ S+ H G EK+TGHNS Sbjct: 204 LLDFISVLSYDLH-GSWEKVTGHNS 227
>RFAF_HAEIN (P45042) ADP-heptose--LPS heptosyltransferase 2 (EC 2.-.-.-)| (ADP-heptose--LPS heptosyltransferase II) Length = 346 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +3 Query: 159 KVLERKAWKGHSSKLLLGNPHLHKQD 236 K++ R+ WKG S +LL + +K+D Sbjct: 100 KIVHRRGWKGESRYILLNDLRANKKD 125
>PLCB4_RAT (Q9QW07) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) Length = 1175 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +3 Query: 30 HLIDWINEFSHTTHNGEQEKLTGHNSSQQCQ--KSCRFRAHASIDKVL------ERKAWK 185 H +W + TH+ E++++ + SQQC+ + AH + L E K + Sbjct: 1020 HTKEWSEMIN--THSAEEQEIRDLHLSQQCELLRKLLINAHEQQTQQLKLSHDRESKEMR 1077 Query: 186 GHSSKLLLGNPHLHKQD 236 H +K+ + N QD Sbjct: 1078 AHQAKISMENSKAISQD 1094
>PURK_SYNP7 (Q54975) Phosphoribosylaminoimidazole carboxylase ATPase subunit| (EC 4.1.1.21) (AIR carboxylase) (AIRC) Length = 395 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Frame = +3 Query: 42 WINEFSHTTHNGEQEKLTGHNSSQQCQKS---CRFRAHASIDKVLERKAWKGHSSKLLLG 212 W+NE + THN +GH S CQ S + RA A + W G LLG Sbjct: 266 WVNEIAPRTHN------SGHYSLDACQTSQFEQQLRAIADLPLGSTALQWPGALMVNLLG 319 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,592,325 Number of Sequences: 219361 Number of extensions: 954520 Number of successful extensions: 2197 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2197 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
