ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet93f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
2dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
3dbj|AP003704.3| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
4gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Ca... 44 0.31
5ref|NG_005305.1| Homo sapiens sulfotransferase family, cytosolic... 42 1.2
6gb|AC003007.1|HUAC003007 Human Chromosome 16 BAC clone CIT987SK-... 42 1.2
7gb|AC106782.5| Homo sapiens chromosome 16 clone RP11-347C12, com... 42 1.2
8gb|AC009124.8| Homo sapiens chromosome 16 clone RP11-489A11, com... 42 1.2
9emb|CR627440.1| Homo sapiens genomic DNA; cDNA DKFZp781P155 (fro... 42 1.2
10gb|AC093857.2| Homo sapiens BAC clone RP11-525J21 from 4, comple... 42 1.2
11gb|AC005632.2| Homo sapiens BAC clone CTB-31N19 from 16, complet... 42 1.2
12gb|AC020716.3| Homo sapiens BAC clone RP11-449G13 from 16, compl... 42 1.2
13ref|NG_005304.1| Homo sapiens sulfotransferase family, cytosolic... 42 1.2
14gb|AC009086.6| Homo sapiens chromosome 16 clone RP11-368N21, com... 42 1.2
15gb|AC133555.3| Homo sapiens chromosome 16 clone RP11-345J4, comp... 42 1.2
16gb|AC106788.3| Homo sapiens chromosome 16 clone RP11-368J21, com... 42 1.2
17gb|AC092119.3| Homo sapiens chromosome 16 clone CTD-2649C14, com... 42 1.2
18gb|AC092375.4| Homo sapiens chromosome 16 clone RP11-645C24, com... 42 1.2
19gb|AC092287.4| Homo sapiens chromosome 16 clone CTD-2288F12, com... 42 1.2
20gb|AC009060.7|AC009060 Homo sapiens chromosome 16 clone RP11-296... 42 1.2
21gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 4.9
22gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 40 4.9
23gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 40 4.9
24gb|AC157805.3| Mus musculus chromosome 1, clone RP24-324B17, com... 40 4.9
25gb|AY955276.1| Aspergillus niger alcohol dehydrogenase (alcB) gene 40 4.9
26emb|CR677591.10| Zebrafish DNA sequence from clone DKEY-222B8 in... 40 4.9
27gb|AC101699.9| Mus musculus chromosome 1, clone RP23-244H18, com... 40 4.9
28gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 40 4.9

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 259     aaagcacacgatcatctgagtaacgatgatgaggttcttcggtgaccatggtagatgt 316
               |||||||| |||||||||| || |||||||||||| || | ||||||| |||||||||
Sbjct: 2788526 aaagcacaagatcatctgaatagcgatgatgaggtcctcccgtgaccaaggtagatgt 2788469



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>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1364A02
          Length = 137933

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 259   aaagcacacgatcatctgagtaacgatgatgaggttcttcggtgaccatggtagatgt 316
             |||||||| |||||||||| || |||||||||||| || | ||||||| |||||||||
Sbjct: 92087 aaagcacaagatcatctgaatagcgatgatgaggtcctcccgtgaccaaggtagatgt 92030



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>dbj|AP003704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1048_C10
          Length = 99194

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 259   aaagcacacgatcatctgagtaacgatgatgaggttcttcggtgaccatggtagatgt 316
             |||||||| |||||||||| || |||||||||||| || | ||||||| |||||||||
Sbjct: 95537 aaagcacaagatcatctgaatagcgatgatgaggtcctcccgtgaccaaggtagatgt 95480



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>gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Cancer Institute Human
             PAC Library) complete sequence
          Length = 109003

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 77    agaacaagaaaaattgacaggg 98
             ||||||||||||||||||||||
Sbjct: 34655 agaacaagaaaaattgacaggg 34676



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>ref|NG_005305.1| Homo sapiens sulfotransferase family, cytosolic, 1A, phenol-preferring,
             member 3/GIY-YIG domain containing 1 region
             (SULT1A3/GIYD1@) on chromosome 16
          Length = 152926

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   acatggagtaaaaagaaagca 264
             |||||||||||||||||||||
Sbjct: 93410 acatggagtaaaaagaaagca 93430



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>gb|AC003007.1|HUAC003007 Human Chromosome 16 BAC clone CIT987SK-A-61E3, complete sequence
          Length = 113916

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   acatggagtaaaaagaaagca 264
             |||||||||||||||||||||
Sbjct: 86229 acatggagtaaaaagaaagca 86209



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>gb|AC106782.5| Homo sapiens chromosome 16 clone RP11-347C12, complete sequence
          Length = 181001

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   acatggagtaaaaagaaagca 264
             |||||||||||||||||||||
Sbjct: 85484 acatggagtaaaaagaaagca 85504



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>gb|AC009124.8| Homo sapiens chromosome 16 clone RP11-489A11, complete sequence
          Length = 168268

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   acatggagtaaaaagaaagca 264
             |||||||||||||||||||||
Sbjct: 68523 acatggagtaaaaagaaagca 68543



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>emb|CR627440.1| Homo sapiens genomic DNA; cDNA DKFZp781P155 (from clone DKFZp781P155)
          Length = 5731

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 244  acatggagtaaaaagaaagca 264
            |||||||||||||||||||||
Sbjct: 4328 acatggagtaaaaagaaagca 4308



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>gb|AC093857.2| Homo sapiens BAC clone RP11-525J21 from 4, complete sequence
          Length = 139224

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 239   atataacatggagtaaaaagaaagc 263
             ||||||||||||| |||||||||||
Sbjct: 17826 atataacatggaggaaaaagaaagc 17850



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>gb|AC005632.2| Homo sapiens BAC clone CTB-31N19 from 16, complete sequence
          Length = 200594

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   acatggagtaaaaagaaagca 264
             |||||||||||||||||||||
Sbjct: 19598 acatggagtaaaaagaaagca 19618



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>gb|AC020716.3| Homo sapiens BAC clone RP11-449G13 from 16, complete sequence
          Length = 171805

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   acatggagtaaaaagaaagca 264
             |||||||||||||||||||||
Sbjct: 15281 acatggagtaaaaagaaagca 15261



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>ref|NG_005304.1| Homo sapiens sulfotransferase family, cytosolic, 1A, phenol-preferring,
             member 4/GIY-YIG domain containing 2 region
             (SULT1A4/GIYD2@) on chromosome 16
          Length = 124025

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   acatggagtaaaaagaaagca 264
             |||||||||||||||||||||
Sbjct: 93756 acatggagtaaaaagaaagca 93776



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>gb|AC009086.6| Homo sapiens chromosome 16 clone RP11-368N21, complete sequence
          Length = 201155

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   acatggagtaaaaagaaagca 264
             |||||||||||||||||||||
Sbjct: 46581 acatggagtaaaaagaaagca 46601



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>gb|AC133555.3| Homo sapiens chromosome 16 clone RP11-345J4, complete sequence
          Length = 200812

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   acatggagtaaaaagaaagca 264
             |||||||||||||||||||||
Sbjct: 96011 acatggagtaaaaagaaagca 95991



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>gb|AC106788.3| Homo sapiens chromosome 16 clone RP11-368J21, complete sequence
          Length = 170613

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 244    acatggagtaaaaagaaagca 264
              |||||||||||||||||||||
Sbjct: 105482 acatggagtaaaaagaaagca 105502



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>gb|AC092119.3| Homo sapiens chromosome 16 clone CTD-2649C14, complete sequence
          Length = 172206

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   acatggagtaaaaagaaagca 264
             |||||||||||||||||||||
Sbjct: 19291 acatggagtaaaaagaaagca 19311



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>gb|AC092375.4| Homo sapiens chromosome 16 clone RP11-645C24, complete sequence
          Length = 173275

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 244    acatggagtaaaaagaaagca 264
              |||||||||||||||||||||
Sbjct: 113042 acatggagtaaaaagaaagca 113062



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>gb|AC092287.4| Homo sapiens chromosome 16 clone CTD-2288F12, complete sequence
          Length = 116478

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   acatggagtaaaaagaaagca 264
             |||||||||||||||||||||
Sbjct: 30657 acatggagtaaaaagaaagca 30677



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>gb|AC009060.7|AC009060 Homo sapiens chromosome 16 clone RP11-296I10, complete sequence
          Length = 180596

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 244    acatggagtaaaaagaaagca 264
              |||||||||||||||||||||
Sbjct: 131446 acatggagtaaaaagaaagca 131466



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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     taaaaagaaagcacacgatc 271
               ||||||||||||||||||||
Sbjct: 1325333 taaaaagaaagcacacgatc 1325314



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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     taaaaagaaagcacacgatc 271
               ||||||||||||||||||||
Sbjct: 1302795 taaaaagaaagcacacgatc 1302776



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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     taaaaagaaagcacacgatc 271
               ||||||||||||||||||||
Sbjct: 1302741 taaaaagaaagcacacgatc 1302722



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>gb|AC157805.3| Mus musculus chromosome 1, clone RP24-324B17, complete sequence
          Length = 212185

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 221   cctccacaaacaagattaatataa 244
             |||||||||| |||||||||||||
Sbjct: 10723 cctccacaaataagattaatataa 10746



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>gb|AY955276.1| Aspergillus niger alcohol dehydrogenase (alcB) gene
          Length = 1960

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   agaaggtcacaccacataca 24
           ||||||||||||||||||||
Sbjct: 545 agaaggtcacaccacataca 526



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>emb|CR677591.10| Zebrafish DNA sequence from clone DKEY-222B8 in linkage group 19,
             complete sequence
          Length = 139082

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 238   aatataacatggagtaaaaagaaa 261
             ||||||||||||| ||||||||||
Sbjct: 89132 aatataacatggaataaaaagaaa 89109



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>gb|AC101699.9| Mus musculus chromosome 1, clone RP23-244H18, complete sequence
          Length = 173113

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 221    cctccacaaacaagattaatataa 244
              |||||||||| |||||||||||||
Sbjct: 128323 cctccacaaataagattaatataa 128346



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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     taaaaagaaagcacacgatc 271
               ||||||||||||||||||||
Sbjct: 1302672 taaaaagaaagcacacgatc 1302653


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,302,731
Number of Sequences: 3902068
Number of extensions: 3302731
Number of successful extensions: 65846
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65717
Number of HSP's gapped (non-prelim): 129
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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