| Clone Name | rbaet93f01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 259 aaagcacacgatcatctgagtaacgatgatgaggttcttcggtgaccatggtagatgt 316 |||||||| |||||||||| || |||||||||||| || | ||||||| ||||||||| Sbjct: 2788526 aaagcacaagatcatctgaatagcgatgatgaggtcctcccgtgaccaaggtagatgt 2788469
>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1364A02 Length = 137933 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 259 aaagcacacgatcatctgagtaacgatgatgaggttcttcggtgaccatggtagatgt 316 |||||||| |||||||||| || |||||||||||| || | ||||||| ||||||||| Sbjct: 92087 aaagcacaagatcatctgaatagcgatgatgaggtcctcccgtgaccaaggtagatgt 92030
>dbj|AP003704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1048_C10 Length = 99194 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 259 aaagcacacgatcatctgagtaacgatgatgaggttcttcggtgaccatggtagatgt 316 |||||||| |||||||||| || |||||||||||| || | ||||||| ||||||||| Sbjct: 95537 aaagcacaagatcatctgaatagcgatgatgaggtcctcccgtgaccaaggtagatgt 95480
>gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 109003 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 77 agaacaagaaaaattgacaggg 98 |||||||||||||||||||||| Sbjct: 34655 agaacaagaaaaattgacaggg 34676
>ref|NG_005305.1| Homo sapiens sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3/GIY-YIG domain containing 1 region (SULT1A3/GIYD1@) on chromosome 16 Length = 152926 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 93410 acatggagtaaaaagaaagca 93430
>gb|AC003007.1|HUAC003007 Human Chromosome 16 BAC clone CIT987SK-A-61E3, complete sequence Length = 113916 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 86229 acatggagtaaaaagaaagca 86209
>gb|AC106782.5| Homo sapiens chromosome 16 clone RP11-347C12, complete sequence Length = 181001 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 85484 acatggagtaaaaagaaagca 85504
>gb|AC009124.8| Homo sapiens chromosome 16 clone RP11-489A11, complete sequence Length = 168268 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 68523 acatggagtaaaaagaaagca 68543
>emb|CR627440.1| Homo sapiens genomic DNA; cDNA DKFZp781P155 (from clone DKFZp781P155) Length = 5731 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 4328 acatggagtaaaaagaaagca 4308
>gb|AC093857.2| Homo sapiens BAC clone RP11-525J21 from 4, complete sequence Length = 139224 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 239 atataacatggagtaaaaagaaagc 263 ||||||||||||| ||||||||||| Sbjct: 17826 atataacatggaggaaaaagaaagc 17850
>gb|AC005632.2| Homo sapiens BAC clone CTB-31N19 from 16, complete sequence Length = 200594 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 19598 acatggagtaaaaagaaagca 19618
>gb|AC020716.3| Homo sapiens BAC clone RP11-449G13 from 16, complete sequence Length = 171805 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 15281 acatggagtaaaaagaaagca 15261
>ref|NG_005304.1| Homo sapiens sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4/GIY-YIG domain containing 2 region (SULT1A4/GIYD2@) on chromosome 16 Length = 124025 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 93756 acatggagtaaaaagaaagca 93776
>gb|AC009086.6| Homo sapiens chromosome 16 clone RP11-368N21, complete sequence Length = 201155 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 46581 acatggagtaaaaagaaagca 46601
>gb|AC133555.3| Homo sapiens chromosome 16 clone RP11-345J4, complete sequence Length = 200812 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 96011 acatggagtaaaaagaaagca 95991
>gb|AC106788.3| Homo sapiens chromosome 16 clone RP11-368J21, complete sequence Length = 170613 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 105482 acatggagtaaaaagaaagca 105502
>gb|AC092119.3| Homo sapiens chromosome 16 clone CTD-2649C14, complete sequence Length = 172206 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 19291 acatggagtaaaaagaaagca 19311
>gb|AC092375.4| Homo sapiens chromosome 16 clone RP11-645C24, complete sequence Length = 173275 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 113042 acatggagtaaaaagaaagca 113062
>gb|AC092287.4| Homo sapiens chromosome 16 clone CTD-2288F12, complete sequence Length = 116478 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 30657 acatggagtaaaaagaaagca 30677
>gb|AC009060.7|AC009060 Homo sapiens chromosome 16 clone RP11-296I10, complete sequence Length = 180596 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 acatggagtaaaaagaaagca 264 ||||||||||||||||||||| Sbjct: 131446 acatggagtaaaaagaaagca 131466
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 taaaaagaaagcacacgatc 271 |||||||||||||||||||| Sbjct: 1325333 taaaaagaaagcacacgatc 1325314
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 taaaaagaaagcacacgatc 271 |||||||||||||||||||| Sbjct: 1302795 taaaaagaaagcacacgatc 1302776
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 taaaaagaaagcacacgatc 271 |||||||||||||||||||| Sbjct: 1302741 taaaaagaaagcacacgatc 1302722
>gb|AC157805.3| Mus musculus chromosome 1, clone RP24-324B17, complete sequence Length = 212185 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 cctccacaaacaagattaatataa 244 |||||||||| ||||||||||||| Sbjct: 10723 cctccacaaataagattaatataa 10746
>gb|AY955276.1| Aspergillus niger alcohol dehydrogenase (alcB) gene Length = 1960 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 agaaggtcacaccacataca 24 |||||||||||||||||||| Sbjct: 545 agaaggtcacaccacataca 526
>emb|CR677591.10| Zebrafish DNA sequence from clone DKEY-222B8 in linkage group 19, complete sequence Length = 139082 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 238 aatataacatggagtaaaaagaaa 261 ||||||||||||| |||||||||| Sbjct: 89132 aatataacatggaataaaaagaaa 89109
>gb|AC101699.9| Mus musculus chromosome 1, clone RP23-244H18, complete sequence Length = 173113 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 cctccacaaacaagattaatataa 244 |||||||||| ||||||||||||| Sbjct: 128323 cctccacaaataagattaatataa 128346
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 taaaaagaaagcacacgatc 271 |||||||||||||||||||| Sbjct: 1302672 taaaaagaaagcacacgatc 1302653 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,302,731 Number of Sequences: 3902068 Number of extensions: 3302731 Number of successful extensions: 65846 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65717 Number of HSP's gapped (non-prelim): 129 length of query: 366 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 344 effective length of database: 17,147,199,772 effective search space: 5898636721568 effective search space used: 5898636721568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)