| Clone Name | rbaet93e05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydrolase, isoenzyme ExoII, mRNA, complete cds Length = 2105 Score = 317 bits (160), Expect = 6e-84 Identities = 166/168 (98%) Strand = Plus / Minus Query: 1 ccgcaagattgcatcgctcttttattgctaacaaatcaaccacaaaacgcaatgtacgta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2020 ccgcaagattgcatcgctcttttattgctaacaaatcaaccacaaaacgcaatgtatgta 1961 Query: 61 tgtatcccatctctcacagtcacagcccaaccgatcgagacacatcccatctcacccgac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1960 tgtatcccatctctcacagtcacagcccaaccgatcgagacacatcccatctcacccgac 1901 Query: 121 tcacttcttggcctcggtggtgaagccgaacccgaaggggaagagcgg 168 ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1900 tcacttcttggcctcggtggtgaggccgaacccgaaggggaagagcgg 1853
>gb|AY091513.1| Triticum aestivum beta-D-glucan exohydrolase mRNA, complete cds Length = 2116 Score = 87.7 bits (44), Expect = 1e-14 Identities = 73/82 (89%), Gaps = 3/82 (3%) Strand = Plus / Minus Query: 1 ccgcaagattgcatcgctcttttattgctaacaa---atcaaccacaaaacgcaatgtac 57 |||||||| |||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 2002 ccgcaagaacgcatcgctcttttattgctaacaacaaatcaaccagaaaactcaatgtat 1943 Query: 58 gtatgtatcccatctctcacag 79 |||||||||||| ||||||||| Sbjct: 1942 gtatgtatcccacctctcacag 1921 Score = 77.8 bits (39), Expect = 1e-11 Identities = 51/55 (92%) Strand = Plus / Minus Query: 114 acccgactcacttcttggcctcggtggtgaagccgaacccgaaggggaagagcgg 168 ||||||||||||| |||||||||||||||| ||||||||||||||| || ||||| Sbjct: 1882 acccgactcacttgttggcctcggtggtgaggccgaacccgaagggaaacagcgg 1828
>gb|AY586531.1| Secale cereale cell wall beta-glucosidase mRNA, complete cds Length = 2215 Score = 67.9 bits (34), Expect = 9e-09 Identities = 43/46 (93%) Strand = Plus / Minus Query: 123 acttcttggcctcggtggtgaagccgaacccgaaggggaagagcgg 168 |||| |||||||||||||||| ||| |||||||||||||||||||| Sbjct: 2055 acttgttggcctcggtggtgaggccaaacccgaaggggaagagcgg 2010 Score = 61.9 bits (31), Expect = 6e-07 Identities = 56/63 (88%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 25 ttgctaacaaatcaaccacaaaacgcaatgtacgtatgta-tcccatctctcacagtcac 83 |||| ||||||||||||||||||| |||||| ||||||| |||||||| ||| |||||| Sbjct: 2170 ttgccaacaaatcaaccacaaaactgaatgtaggtatgtattcccatctttcagagtcac 2111 Query: 84 agc 86 ||| Sbjct: 2110 agc 2108
>gb|AY103742.1| Zea mays PCO090119 mRNA sequence Length = 2612 Score = 44.1 bits (22), Expect = 0.14 Identities = 43/50 (86%) Strand = Plus / Minus Query: 119 actcacttcttggcctcggtggtgaagccgaacccgaaggggaagagcgg 168 ||||||||| || ||| |||||||| ||||| ||||| ||||||||||| Sbjct: 2254 actcacttcgtgcccttggtggtgagtccgaagccgaacgggaagagcgg 2205
>ref|XM_469751.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2156 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 137 gtggtgaagccgaacccgaaggggaagagcgg 168 ||||||| |||| | ||||||||||||||||| Sbjct: 2137 gtggtgaggccgtagccgaaggggaagagcgg 2106
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 137 gtggtgaagccgaacccgaaggggaagagcgg 168 ||||||| |||| | ||||||||||||||||| Sbjct: 30564595 gtggtgaggccgtagccgaaggggaagagcgg 30564564
>gb|AF406702.1| Solanum tuberosum BEL1-related homeotic protein 29 (Bel29) mRNA, partial cds Length = 2128 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 tgaagccgaacccgaaggggaaga 164 |||||||||||||||||| ||||| Sbjct: 99 tgaagccgaacccgaaggcgaaga 76
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 137 gtggtgaagccgaacccgaaggggaagagcgg 168 ||||||| |||| | ||||||||||||||||| Sbjct: 96168 gtggtgaggccgtagccgaaggggaagagcgg 96137
>gb|AC099026.1| Drosophila melanogaster, chromosome 2R, region 49F-50A, BAC clone BACR05M17, complete sequence Length = 182039 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 caaccacaaaacgcaatgta 56 |||||||||||||||||||| Sbjct: 24834 caaccacaaaacgcaatgta 24815
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 137 gtggtgaagccgaacccgaaggggaagagcgg 168 ||||||| |||| | ||||||||||||||||| Sbjct: 30656017 gtggtgaggccgtagccgaaggggaagagcgg 30655986
>dbj|AK122100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125I15, full insert sequence Length = 2144 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 137 gtggtgaagccgaacccgaaggggaagagcgg 168 ||||||| |||| | ||||||||||||||||| Sbjct: 1877 gtggtgaggccgtagccgaaggggaagagcgg 1846
>dbj|AK119203.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-D08, full insert sequence Length = 1675 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 137 gtggtgaagccgaacccgaaggggaagagcgg 168 ||||||| |||| | ||||||||||||||||| Sbjct: 1409 gtggtgaggccgtagccgaaggggaagagcgg 1378
>dbj|AK065044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H22, full insert sequence Length = 3093 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 137 gtggtgaagccgaacccgaaggggaagagcgg 168 ||||||| |||| | ||||||||||||||||| Sbjct: 2827 gtggtgaggccgtagccgaaggggaagagcgg 2796
>dbj|AK062147.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H01, full insert sequence Length = 524 Score = 40.1 bits (20), Expect = 2.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 137 gtggtgaagccgaacccgaaggggaagagcgg 168 ||||||| |||| | ||||||||||||||||| Sbjct: 262 gtggtgaggccgtagccgaaggggaagagcgg 231
>gb|AE003818.3| Drosophila melanogaster chromosome 2R, section 32 of 73 of the complete sequence Length = 291923 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 caaccacaaaacgcaatgta 56 |||||||||||||||||||| Sbjct: 27474 caaccacaaaacgcaatgta 27493
>gb|AC006422.1|AC006422 Drosophila melanogaster, chromosome 2R, region 50A2-50A3, P1 clones DS08976 and DS01149, complete sequence Length = 129605 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 caaccacaaaacgcaatgta 56 |||||||||||||||||||| Sbjct: 68330 caaccacaaaacgcaatgta 68349
>gb|AC150574.2| Bos taurus BAC CH240-237H4 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 142758 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 gctcttttattgctaacaa 34 ||||||||||||||||||| Sbjct: 6303 gctcttttattgctaacaa 6321
>ref|XM_361103.1| Magnaporthe grisea 70-15 hypothetical protein (MG03646.4) partial mRNA Length = 1683 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 147 cgaacccgaaggggaagagcgga 169 ||||| ||||||||||||||||| Sbjct: 1516 cgaactcgaaggggaagagcgga 1538
>ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfamily A (CYP2A) on chromosome 19 Length = 413528 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 67 ccatctctcacagtcacagccca 89 |||||||||||||| |||||||| Sbjct: 247383 ccatctctcacagtgacagccca 247361
>emb|AJ249787.1|CPA249787 Cyanophora paradoxa mRNA for putative transketolase precursor (tktC gene) Length = 2595 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 133 ctcggtggtgaagccgaac 151 ||||||||||||||||||| Sbjct: 2304 ctcggtggtgaagccgaac 2286
>gb|AC006708.2| Caenorhabditis elegans cosmid Y110A7A, complete sequence Length = 70694 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 aaccacaaaacgcaatgta 56 ||||||||||||||||||| Sbjct: 21604 aaccacaaaacgcaatgta 21586
>gb|AC116480.10| Mus musculus chromosome 12, clone RP23-398M9, complete sequence Length = 194708 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 aacaaatcaaccacaaaac 48 ||||||||||||||||||| Sbjct: 138813 aacaaatcaaccacaaaac 138795
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 135 cggtggtgaagccgaacccgaag 157 ||||||||| ||||||||||||| Sbjct: 1173723 cggtggtgacgccgaacccgaag 1173745
>gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete sequence Length = 104336 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 ctaacaaatcaaccacaaa 46 ||||||||||||||||||| Sbjct: 83795 ctaacaaatcaaccacaaa 83777
>emb|AL157877.11| Human DNA sequence from clone RP11-2P5 on chromosome 13 Contains the 5' end of a novel gene, the gene for suppressor of G2 allele of SKP1, S. cerevisiae, the 5' end of a gene similar to TPTE and PTEN homologous inositol lipid phosphatase (TPIP) , a pseudogene similar to part of regulator of G-protein signalling 17 (RGS17), the WBP4 gene for WW domain binding protein 4 (formin binding protein 21) and 4 CpG islands, complete sequence Length = 198567 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 ctcttttattgctaacaaa 35 ||||||||||||||||||| Sbjct: 193886 ctcttttattgctaacaaa 193904
>emb|AL592465.8| Mouse DNA sequence from clone RP23-36C4 on chromosome 11 Contains the Tbx4 gene for T-box 4, a ribosomal protein L21 (Rpl21) pseudogene and the 3' end of the Brip1 gene for BRCA1 interacting protein C-terminal helicase 1, complete sequence Length = 238358 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 gagacacatcccatctcac 115 ||||||||||||||||||| Sbjct: 116820 gagacacatcccatctcac 116838
>gb|AC113190.8| Homo sapiens chromosome 15, clone RP11-186H10, complete sequence Length = 161765 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 aacaaatcaaccacaaaac 48 ||||||||||||||||||| Sbjct: 129634 aacaaatcaaccacaaaac 129652
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 126 tcttggcctcggtggtgaagccg 148 |||||||||||||||||| |||| Sbjct: 235757 tcttggcctcggtggtgacgccg 235735
>gb|AE011731.1| Xanthomonas axonopodis pv. citri str. 306, section 109 of 469 of the complete genome Length = 10029 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 135 cggtggtgaagccgaacccgaag 157 ||||||||| ||||||||||||| Sbjct: 5089 cggtggtgacgccgaacccgaag 5111
>gb|AC012295.20| Mus musculus chromosome 11, clone RP23-48A17, complete sequence Length = 187364 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 gagacacatcccatctcac 115 ||||||||||||||||||| Sbjct: 170264 gagacacatcccatctcac 170282
>gb|AC008962.9| Homo sapiens chromosome 19 clone CTD-2356P16, complete sequence Length = 154169 Score = 38.2 bits (19), Expect = 8.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 67 ccatctctcacagtcacagccca 89 |||||||||||||| |||||||| Sbjct: 23639 ccatctctcacagtgacagccca 23617
>ref|NM_001026548.2| Caenorhabditis elegans Y110A7A.9b (Y110A7A.9) mRNA, complete cds Length = 3099 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 aaccacaaaacgcaatgta 56 ||||||||||||||||||| Sbjct: 2166 aaccacaaaacgcaatgta 2148
>ref|NM_001026547.2| Caenorhabditis elegans Y110A7A.9a (Y110A7A.9) mRNA, complete cds Length = 3231 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 aaccacaaaacgcaatgta 56 ||||||||||||||||||| Sbjct: 2166 aaccacaaaacgcaatgta 2148
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 aaaacgcaatgtacgtatg 62 ||||||||||||||||||| Sbjct: 21316133 aaaacgcaatgtacgtatg 21316151
>dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0038K02 Length = 118635 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 aaaacgcaatgtacgtatg 62 ||||||||||||||||||| Sbjct: 48512 aaaacgcaatgtacgtatg 48530
>emb|AL591769.3|CNS07EGM Human chromosome 14 DNA sequence BAC R-600G2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172856 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 gctaacaaatcaaccacaa 45 ||||||||||||||||||| Sbjct: 9329 gctaacaaatcaaccacaa 9347
>emb|AL591768.2|CNS07EGL Human chromosome 14 DNA sequence BAC R-274A16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 159567 Score = 38.2 bits (19), Expect = 8.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 gctaacaaatcaaccacaa 45 ||||||||||||||||||| Sbjct: 127330 gctaacaaatcaaccacaa 127348 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,226,820 Number of Sequences: 3902068 Number of extensions: 1226820 Number of successful extensions: 81017 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80771 Number of HSP's gapped (non-prelim): 245 length of query: 171 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 149 effective length of database: 17,147,199,772 effective search space: 2554932766028 effective search space used: 2554932766028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)