ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet93c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_785201.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 0.56
2gb|AC120859.12| Mus musculus chromosome 18, clone RP24-200D2, co... 40 2.2
3gb|AY435216.1| Sus scrofa T-box 21 (TBX21) mRNA, partial cds 40 2.2
4gb|AC166570.2| Mus musculus chromosome 18, clone RP24-74O22, com... 40 2.2
5gb|AC130821.3| Mus musculus BAC clone RP23-205K12 from chromosom... 40 2.2
6emb|AL591214.8| Human DNA sequence from clone RP11-18I23 on chro... 40 2.2
7emb|AL353650.5| Human DNA sequence from clone RP11-344N19 on chr... 40 2.2
8gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Canc... 40 2.2
9gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Canc... 40 2.2
10dbj|AP003515.1| Clostridium perfringens str. 13 plasmid pCP13 DN... 40 2.2
11emb|AJ276421.2|CAR276421 Cicer arietinum partial mRNA for putati... 40 2.2
12gb|AC140431.4| Mus musculus BAC clone RP24-172K3 from chromosome... 38 8.7
13gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome... 38 8.7
14gb|AF190464.1| Homo sapiens hepatocytic transcription factor (B1... 38 8.7
15gb|AC150674.4| Bos taurus BAC CH240-443I13 (Children's Hospital... 38 8.7
16gb|AC093196.2| Drosophila melanogaster clone BACR22H06, complete... 38 8.7
17gb|AC009744.8| Drosophila melanogaster clone BACR06G16, complete... 38 8.7
18gb|AC158347.4| Mus musculus chromosome 3, clone RP23-380F8, comp... 38 8.7
19gb|AC114000.5| Mus musculus BAC clone RP23-161K1 from chromosome... 38 8.7
20gb|AC005748.10| Homo sapiens X BAC GS1-293I18 (Genome Systems Hu... 38 8.7
21gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, compl... 38 8.7
22gb|AF438083.1| Lasiocera sp. KAO-2001 28S ribosomal RNA gene, pa... 38 8.7
23ref|XM_718657.1| Plasmodium yoelii yoelii str. 17XNL inorganic p... 38 8.7
24gb|AC004921.2| Homo sapiens PAC clone RP5-899E9 from 7, complete... 38 8.7
25gb|AC151835.4| Mus musculus BAC clone RP23-333J1 from chromosome... 38 8.7
26emb|BX000992.5| Human DNA sequence from clone RP11-431P13 on chr... 38 8.7
27emb|AL590966.10| Human DNA sequence from clone RP11-191N8 on chr... 38 8.7
28emb|AL606482.14| Mouse DNA sequence from clone RP23-360H16 on ch... 38 8.7
29gb|AC160146.10| Mus musculus 10 BAC RP24-421I12 (Roswell Park Ca... 38 8.7
30dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 38 8.7
31gb|AC092940.6| Homo sapiens 3 BAC RP11-128L14 (Roswell Park Canc... 38 8.7
32ref|NM_176005.1| Drosophila melanogaster CG5853-RA (CG5853), mRNA 38 8.7
33ref|NM_135485.4| Drosophila melanogaster CG4619-RA (CG4619), mRNA 38 8.7
34gb|AC097065.2| Homo sapiens chromosome 1 clone RP11-532L16, comp... 38 8.7
35gb|AY061494.1| Drosophila melanogaster LD45607 full length cDNA 38 8.7
36gb|AY052113.1| Drosophila melanogaster SD06390 full length cDNA 38 8.7
37gb|AC155231.2| Mus musculus BAC clone RP24-336I23 from chromosom... 38 8.7
38gb|AC158800.6| Mus musculus 10 BAC RP23-435N6 (Roswell Park Canc... 38 8.7
39gb|AC115949.13| Mus musculus chromosome 3, clone RP24-568B16, co... 38 8.7
40gb|AC096728.3| Homo sapiens BAC clone RP11-53C16 from 4, complet... 38 8.7
41gb|AC007654.2|AC007654 Genomic sequence for Arabidopsis thaliana... 38 8.7
42gb|AC156448.2| Volvox carteri clone JGIAOBO-33O24, complete sequ... 38 8.7
43gb|AF053749.1|AF053749 Homo sapiens glial cell line-derived neur... 38 8.7
44emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chro... 38 8.7
45gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35... 38 8.7
46emb|AL133273.5| Human DNA sequence from clone RP11-518F7 on chro... 38 8.7
47emb|AL158800.6|CNS01RGM Human chromosome 14 DNA sequence BAC R-3... 38 8.7
48emb|AL844490.4| Mouse DNA sequence from clone RP23-98P13 on chro... 38 8.7 
>ref|XM_785201.1| PREDICTED: Strongylocentrotus purpuratus similar to guanine
           nucleotide binding protein-like 2 (nucleolar)
           (LOC585370), mRNA
          Length = 2328

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 82  tcctccatcatcgaacaccaa 102
           |||||||||||||||||||||
Sbjct: 711 tcctccatcatcgaacaccaa 691
to top
>gb|AC120859.12| Mus musculus chromosome 18, clone RP24-200D2, complete sequence
          Length = 184327

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 158  gggaggagaggagagtttac 177
            ||||||||||||||||||||
Sbjct: 2258 gggaggagaggagagtttac 2239
to top
>gb|AY435216.1| Sus scrofa T-box 21 (TBX21) mRNA, partial cds
          Length = 200

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 154 gttggggaggagaggagagt 173
           ||||||||||||||||||||
Sbjct: 58  gttggggaggagaggagagt 39
to top
>gb|AC166570.2| Mus musculus chromosome 18, clone RP24-74O22, complete sequence
          Length = 163755

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   gggaggagaggagagtttac 177
             ||||||||||||||||||||
Sbjct: 62225 gggaggagaggagagtttac 62244
to top
>gb|AC130821.3| Mus musculus BAC clone RP23-205K12 from chromosome 13, complete sequence
          Length = 227411

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    gggaggagaggagagtttac 177
              ||||||||||||||||||||
Sbjct: 114433 gggaggagaggagagtttac 114452
to top
>emb|AL591214.8| Human DNA sequence from clone RP11-18I23 on chromosome 9 Contains part
             of one variant of the ROR2 gene for receptor tyrosine
             kinase-like orphan receptor 2, complete sequence
          Length = 66959

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    cacggaacaatcctccatca 91
             ||||||||||||||||||||
Sbjct: 17703 cacggaacaatcctccatca 17684
to top
>emb|AL353650.5| Human DNA sequence from clone RP11-344N19 on chromosome 10 Contains
            the 5' end of a novel gene (DKFZp761L0424) (KIAA1217) and
            a CpG island, complete sequence
          Length = 84778

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 11   gtatgatcttccaatccaac 30
            ||||||||||||||||||||
Sbjct: 8120 gtatgatcttccaatccaac 8139
to top
>gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 206282

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    aaagagttggggaggagagg 168
              ||||||||||||||||||||
Sbjct: 182578 aaagagttggggaggagagg 182559
to top
>gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 219861

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    aaagagttggggaggagagg 168
              ||||||||||||||||||||
Sbjct: 197420 aaagagttggggaggagagg 197439
to top
>dbj|AP003515.1| Clostridium perfringens str. 13 plasmid pCP13 DNA, complete sequence
          Length = 54310

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    aactgacaataatatgtacaagta 51
             ||||||||||||||| ||||||||
Sbjct: 44575 aactgacaataatatttacaagta 44552
to top
>emb|AJ276421.2|CAR276421 Cicer arietinum partial mRNA for putative proline-rich protein APG
            isolog
          Length = 1334

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 40   tatgtacaagtacaacgacacatt 63
            |||||||||||||||| |||||||
Sbjct: 1095 tatgtacaagtacaactacacatt 1118
to top
>gb|AC140431.4| Mus musculus BAC clone RP24-172K3 from chromosome 7, complete sequence
          Length = 172958

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 146   agcaaagagttggggagga 164
             |||||||||||||||||||
Sbjct: 62758 agcaaagagttggggagga 62776
to top
>gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome 14, complete sequence
          Length = 200560

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 136    ctgtctcaacagcaaagag 154
              |||||||||||||||||||
Sbjct: 155472 ctgtctcaacagcaaagag 155454
to top
>gb|AF190464.1| Homo sapiens hepatocytic transcription factor (B1F) gene, alternatively
              spliced products, complete cds, complete sequence
          Length = 209216

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 124    agaaatggcaggctgtctc 142
              |||||||||||||||||||
Sbjct: 206503 agaaatggcaggctgtctc 206521
to top
>gb|AC150674.4| Bos taurus  BAC CH240-443I13 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 194860

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    acaataatatgtacaagta 51
             |||||||||||||||||||
Sbjct: 76887 acaataatatgtacaagta 76869
to top
>gb|AC093196.2| Drosophila melanogaster clone BACR22H06, complete sequence
          Length = 173008

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 35     aataatatgtacaagtaca 53
              |||||||||||||||||||
Sbjct: 156881 aataatatgtacaagtaca 156863
to top
>gb|AC009744.8| Drosophila melanogaster clone BACR06G16, complete sequence
          Length = 179038

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 35    aataatatgtacaagtaca 53
             |||||||||||||||||||
Sbjct: 49740 aataatatgtacaagtaca 49722
to top
>gb|AC158347.4| Mus musculus chromosome 3, clone RP23-380F8, complete sequence
          Length = 193489

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 136    ctgtctcaacagcaaagagttgg 158
              ||||||||| |||||||||||||
Sbjct: 141504 ctgtctcaaaagcaaagagttgg 141482
to top
>gb|AC114000.5| Mus musculus BAC clone RP23-161K1 from chromosome 14, complete sequence
          Length = 212322

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 153   agttggggaggagaggaga 171
             |||||||||||||||||||
Sbjct: 34471 agttggggaggagaggaga 34453
to top
>gb|AC005748.10| Homo sapiens X BAC GS1-293I18 (Genome Systems Human BAC Library) complete
              sequence
          Length = 130615

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 121    aacagaaatggcaggctgt 139
              |||||||||||||||||||
Sbjct: 125734 aacagaaatggcaggctgt 125716
to top
>gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, complete sequence
          Length = 182661

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 150    aagagttggggaggagagg 168
              |||||||||||||||||||
Sbjct: 111628 aagagttggggaggagagg 111646
to top
>gb|AF438083.1| Lasiocera sp. KAO-2001 28S ribosomal RNA gene, partial sequence
          Length = 1040

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 36  ataatatgtacaagtacaa 54
           |||||||||||||||||||
Sbjct: 635 ataatatgtacaagtacaa 617
to top
>ref|XM_718657.1| Plasmodium yoelii yoelii str. 17XNL inorganic pyrophosphatase
           (PY03581) partial mRNA
          Length = 921

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 12  tatgatcttccaatccaactgac 34
           |||||| ||||||||||||||||
Sbjct: 489 tatgattttccaatccaactgac 467
to top
>gb|AC004921.2| Homo sapiens PAC clone RP5-899E9 from 7, complete sequence
          Length = 150332

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 153   agttggggaggagaggagagttt 175
             |||||||||| ||||||||||||
Sbjct: 73759 agttggggagtagaggagagttt 73737
to top
>gb|AC151835.4| Mus musculus BAC clone RP23-333J1 from chromosome 14, complete sequence
          Length = 215551

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 153    agttggggaggagaggaga 171
              |||||||||||||||||||
Sbjct: 154372 agttggggaggagaggaga 154354
to top
>emb|BX000992.5| Human DNA sequence from clone RP11-431P13 on chromosome X, complete
            sequence
          Length = 46289

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 126  aaatggcaggctgtctcaa 144
            |||||||||||||||||||
Sbjct: 9031 aaatggcaggctgtctcaa 9049
to top
>emb|AL590966.10| Human DNA sequence from clone RP11-191N8 on chromosome 1 Contains the
             DUSP10 gene for dual specificity phosphatase 10 (DUSP10),
             a novel gene and a CpG island, complete sequence
          Length = 165588

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 150   aagagttggggaggagagg 168
             |||||||||||||||||||
Sbjct: 38380 aagagttggggaggagagg 38362
to top
>emb|AL606482.14| Mouse DNA sequence from clone RP23-360H16 on chromosome 11 Contains
            the genes for olfactory receptors MOR135-7, -8, -10 and
            -28, three olfactory receptor MOR135 pseudogenes, and the
            gene for olfactory receptor MOR157-1, complete sequence
          Length = 199115

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 145  cagcaaagagttggggaggagag 167
            |||| ||||||||||||||||||
Sbjct: 7843 cagccaagagttggggaggagag 7821
to top
>gb|AC160146.10| Mus musculus 10 BAC RP24-421I12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 167510

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 124   agaaatggcaggctgtctc 142
             |||||||||||||||||||
Sbjct: 89224 agaaatggcaggctgtctc 89242
to top
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 75      ggaacaatcctccatcatc 93
               |||||||||||||||||||
Sbjct: 2386601 ggaacaatcctccatcatc 2386583
to top
>gb|AC092940.6| Homo sapiens 3 BAC RP11-128L14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164805

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     aataatatgtacaagtaca 53
              |||||||||||||||||||
Sbjct: 117913 aataatatgtacaagtaca 117931
to top
>ref|NM_176005.1| Drosophila melanogaster CG5853-RA (CG5853), mRNA
          Length = 2421

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 35   aataatatgtacaagtaca 53
            |||||||||||||||||||
Sbjct: 2359 aataatatgtacaagtaca 2377
to top
>ref|NM_135485.4| Drosophila melanogaster CG4619-RA (CG4619), mRNA
          Length = 2387

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 35   aataatatgtacaagtaca 53
            |||||||||||||||||||
Sbjct: 1907 aataatatgtacaagtaca 1889
to top
>gb|AC097065.2| Homo sapiens chromosome 1 clone RP11-532L16, complete sequence
          Length = 176861

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 124  agaaatggcaggctgtctc 142
            |||||||||||||||||||
Sbjct: 7965 agaaatggcaggctgtctc 7983
to top
>gb|AY061494.1| Drosophila melanogaster LD45607 full length cDNA
          Length = 1915

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 35   aataatatgtacaagtaca 53
            |||||||||||||||||||
Sbjct: 1882 aataatatgtacaagtaca 1864
to top
>gb|AY052113.1| Drosophila melanogaster SD06390 full length cDNA
          Length = 2372

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 35   aataatatgtacaagtaca 53
            |||||||||||||||||||
Sbjct: 2294 aataatatgtacaagtaca 2312
to top
>gb|AC155231.2| Mus musculus BAC clone RP24-336I23 from chromosome 12, complete sequence
          Length = 175296

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 122    acagaaatggcaggctgtc 140
              |||||||||||||||||||
Sbjct: 138875 acagaaatggcaggctgtc 138893
to top
>gb|AC158800.6| Mus musculus 10 BAC RP23-435N6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 190805

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 150   aagagttggggaggagagg 168
             |||||||||||||||||||
Sbjct: 44244 aagagttggggaggagagg 44262
to top
>gb|AC115949.13| Mus musculus chromosome 3, clone RP24-568B16, complete sequence
          Length = 177771

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 136   ctgtctcaacagcaaagagttgg 158
             ||||||||| |||||||||||||
Sbjct: 13308 ctgtctcaaaagcaaagagttgg 13286
to top
>gb|AC096728.3| Homo sapiens BAC clone RP11-53C16 from 4, complete sequence
          Length = 82696

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 157   ggggaggagaggagagttt 175
             |||||||||||||||||||
Sbjct: 51694 ggggaggagaggagagttt 51676
to top
>gb|AC007654.2|AC007654 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I,
             complete sequence
          Length = 87618

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    taatatgtacaagtacaac 55
             |||||||||||||||||||
Sbjct: 67509 taatatgtacaagtacaac 67491
to top
>gb|AC156448.2| Volvox carteri clone JGIAOBO-33O24, complete sequence
          Length = 38975

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 154   gttggggaggagaggagag 172
             |||||||||||||||||||
Sbjct: 31517 gttggggaggagaggagag 31499
to top
>gb|AF053749.1|AF053749 Homo sapiens glial cell line-derived neurotrophic factor (GDNF) gene,
            5' flanking sequence and exon 1
          Length = 1943

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 154  gttggggaggagaggagag 172
            |||||||||||||||||||
Sbjct: 1180 gttggggaggagaggagag 1162
to top
>emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chromosome 12, complete
              sequence
          Length = 214861

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 122    acagaaatggcaggctgtc 140
              |||||||||||||||||||
Sbjct: 202660 acagaaatggcaggctgtc 202642
to top
>gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35 of 83 of the complete
              sequence
          Length = 264919

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 35     aataatatgtacaagtaca 53
              |||||||||||||||||||
Sbjct: 231970 aataatatgtacaagtaca 231952
to top
>emb|AL133273.5| Human DNA sequence from clone RP11-518F7 on chromosome Xq26.3-27.3,
             complete sequence
          Length = 42375

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 126   aaatggcaggctgtctcaa 144
             |||||||||||||||||||
Sbjct: 35245 aaatggcaggctgtctcaa 35227
to top
>emb|AL158800.6|CNS01RGM Human chromosome 14 DNA sequence BAC R-359N5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163979

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 156   tggggaggagaggagagtt 174
             |||||||||||||||||||
Sbjct: 33750 tggggaggagaggagagtt 33732
to top
>emb|AL844490.4| Mouse DNA sequence from clone RP23-98P13 on chromosome X, complete
              sequence
          Length = 108612

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 144    acagcaaagagttggggag 162
              |||||||||||||||||||
Sbjct: 100751 acagcaaagagttggggag 100733


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,814,407
Number of Sequences: 3902068
Number of extensions: 1814407
Number of successful extensions: 224687
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224476
Number of HSP's gapped (non-prelim): 211
length of query: 178
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 156
effective length of database: 17,147,199,772
effective search space: 2674963164432
effective search space used: 2674963164432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top