ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet93c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-as... 28 4.4
2ZRP4_MAIZE (P47917) O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT) 28 4.4
3PA2A_CROSS (P18998) Mojave toxin acidic chain precursor (Mtx-a) ... 27 9.7
4ABC3C_HUMAN (Q9NRW3) Probable DNA dC->dU-editing enzyme APOBEC-3... 27 9.7

>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated|
           protein 10.8) (High sulfur keratin-associated protein
           10.8) (Keratin-associated protein 18-8)
           (Keratin-associated protein 18.8)
          Length = 259

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 316 CQEA--GSSSCH*GLSIRLCDQSNICLHICCGLLC 218
           CQ A   SS C     + +C +SN C  +CC  +C
Sbjct: 104 CQPACCTSSPCQQACCVPVCCKSNCCKPVCCVSIC 138



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>ZRP4_MAIZE (P47917) O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT)|
          Length = 364

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 330 SGYKIVKKLGARAVIEVYP 274
           S Y+I+  LG R++IEVYP
Sbjct: 346 SDYRIIPVLGVRSIIEVYP 364



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>PA2A_CROSS (P18998) Mojave toxin acidic chain precursor (Mtx-a) [Contains:|
           Mojave toxin acidic chain A; Mojave toxin acidic chain
           B; Mojave toxin acidic chain C]
          Length = 138

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 20/74 (27%), Positives = 26/74 (35%)
 Frame = -3

Query: 243 CIYVVDCCVCSL*GRINKGVPCIFQSEVLQIIN*QGCDVLSSYDPCANFLLEKDSMQLDC 64
           C +  DCC   L G       C   ++V       G  V    DPC   + E D     C
Sbjct: 59  CCFEHDCCYAKLTG-------CDPTTDVYTYRQEDGEIVCGGDDPCGTQICECDKAAAIC 111

Query: 63  FSYSMYYVQYPTIK 22
           F  SM    Y  ++
Sbjct: 112 FRDSMNTYDYKYLR 125



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>ABC3C_HUMAN (Q9NRW3) Probable DNA dC->dU-editing enzyme APOBEC-3C (EC 3.5.4.-)|
           (APOBEC1-like) (Phorbolin I protein)
          Length = 190

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
 Frame = -3

Query: 123 SSYDPC-------ANFLLEKDSMQLDCFSYSMYYVQYP 31
           +S+ PC       A FL    ++ L  F+  +YY QYP
Sbjct: 92  TSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYP 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,065,331
Number of Sequences: 219361
Number of extensions: 791122
Number of successful extensions: 1441
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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