ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet93b06 |
|---|---|
| Clone Library Name | barley_pub |
>FENR_MESCR (P41343) Ferredoxin--NADP reductase, chloroplast precursor (EC| 1.18.1.2) (FNR) Length = 365 Score = 107 bits (268), Expect = 6e-24 Identities = 49/53 (92%), Positives = 51/53 (96%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 LKKDNTYVYMCGLKGMEKGIDDIMV LAA+DGI+W DYKKQLKKAEQWNVEVY Sbjct: 313 LKKDNTYVYMCGLKGMEKGIDDIMVSLAAEDGIDWFDYKKQLKKAEQWNVEVY 365
>FENR1_ORYSA (P41344) Ferredoxin--NADP reductase, leaf isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 362 Score = 105 bits (262), Expect = 3e-23 Identities = 48/53 (90%), Positives = 50/53 (94%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 LKKD+TYVYMCGLKGMEKGIDDIMV LAAKDGI+W DYKKQLKK EQWNVEVY Sbjct: 310 LKKDHTYVYMCGLKGMEKGIDDIMVSLAAKDGIDWADYKKQLKKGEQWNVEVY 362
>FENR1_PEA (P10933) Ferredoxin--NADP reductase, leaf isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 360 Score = 103 bits (257), Expect = 1e-22 Identities = 46/53 (86%), Positives = 51/53 (96%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 LKKDNT+VYMCGLKGMEKGIDDIMV LAAKDGI+W++YK+ LKKAEQWNVEVY Sbjct: 308 LKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 360
>FENR_SPIOL (P00455) Ferredoxin--NADP reductase, chloroplast precursor (EC| 1.18.1.2) (FNR) Length = 369 Score = 101 bits (252), Expect = 4e-22 Identities = 45/53 (84%), Positives = 50/53 (94%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 LKKDNTY YMCGLKGMEKGIDDIMV LAA +GI+W++YK+QLKKAEQWNVEVY Sbjct: 317 LKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQWNVEVY 369
>FENR_VICFA (P41346) Ferredoxin--NADP reductase, chloroplast precursor (EC| 1.18.1.2) (FNR) Length = 363 Score = 99.0 bits (245), Expect = 3e-21 Identities = 43/53 (81%), Positives = 49/53 (92%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 LKKDNT+VYMCGLKGMEKGIDDIMV + KDGI+W++YK+ LKKAEQWNVEVY Sbjct: 311 LKKDNTFVYMCGLKGMEKGIDDIMVSIRPKDGIDWIEYKRTLKKAEQWNVEVY 363
>FENR1_TOBAC (O04977) Ferredoxin--NADP reductase, leaf-type isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 362 Score = 94.7 bits (234), Expect = 5e-20 Identities = 42/53 (79%), Positives = 48/53 (90%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 L+KDNT++YMCGLKGME+GID+IM LA +DGI W DYKKQLKKAEQWNVEVY Sbjct: 310 LQKDNTFIYMCGLKGMEQGIDEIMSALAERDGIVWADYKKQLKKAEQWNVEVY 362
>FENR_ANAVT (Q44549) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 440 Score = 69.7 bits (169), Expect = 2e-12 Identities = 28/53 (52%), Positives = 40/53 (75%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 +K + T+ Y+CGL+GME+GID + AAK+G+ W DY+K LKKA +W+VE Y Sbjct: 388 IKNEKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 440
>FENR_ANASP (P58558) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 440 Score = 69.7 bits (169), Expect = 2e-12 Identities = 28/53 (52%), Positives = 40/53 (75%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 +K + T+ Y+CGL+GME+GID + AAK+G+ W DY+K LKKA +W+VE Y Sbjct: 388 IKNEKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 440
>FENR_ANASO (P21890) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 440 Score = 68.9 bits (167), Expect = 3e-12 Identities = 28/53 (52%), Positives = 39/53 (73%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 +K T+ Y+CGL+GME+GID + AAK+G+ W DY+K LKKA +W+VE Y Sbjct: 388 IKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 440
>FENR_SPISP (P00454) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 294 Score = 66.6 bits (161), Expect = 1e-11 Identities = 28/53 (52%), Positives = 39/53 (73%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 ++K NT+ Y+CGLKGME GID+ M A K ++W DY+K+LKK +W+VE Y Sbjct: 242 IQKPNTHTYICGLKGMEGGIDEGMSAAAGKFDVDWSDYQKELKKKHRWHVETY 294
>FENR_SYNEL (Q93RE3) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 386 Score = 65.1 bits (157), Expect = 4e-11 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 1/54 (1%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDY-KKQLKKAEQWNVEVY 192 L+K NT+VYMCGL+GME GID+ M AAK+G +W ++ K LKK +W+VE Y Sbjct: 333 LQKKNTHVYMCGLRGMEPGIDEAMTAAAAKNGADWQEFLKGTLKKEGRWHVETY 386
>FENR_SYNP2 (P31973) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 402 Score = 63.5 bits (153), Expect = 1e-10 Identities = 26/53 (49%), Positives = 38/53 (71%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 ++K NT+VYMCGLKGM+ ID+ A K G+NW + ++ +KK +W+VEVY Sbjct: 350 IQKPNTHVYMCGLKGMQPPIDETFTAEAEKRGLNWEEMRRSMKKEHRWHVEVY 402
>FENR_CYAPA (Q00598) Ferredoxin--NADP reductase, cyanelle precursor (EC| 1.18.1.2) (FNR) Length = 363 Score = 62.0 bits (149), Expect = 3e-10 Identities = 27/53 (50%), Positives = 36/53 (67%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 ++K NT+VYMCGL+GME GI M D+A +G W K LKK ++W+VE Y Sbjct: 311 IQKPNTFVYMCGLRGMEDGIQQCMEDIAKANGTTWDAVVKGLKKEKRWHVETY 363
>FENR_SYNY3 (Q55318) Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR)| Length = 413 Score = 60.1 bits (144), Expect = 1e-09 Identities = 23/53 (43%), Positives = 36/53 (67%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 ++ T+ YMCGLKGME GID+ LA ++G W +++++KK +W+VE Y Sbjct: 361 MQNPKTHTYMCGLKGMEPGIDEAFTALAEQNGKEWTTFQREMKKEHRWHVETY 413
>FENR2_TOBAC (O04397) Ferredoxin--NADP reductase, root-type isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 375 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/53 (45%), Positives = 33/53 (62%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 L + ++Y CGLKGM GI D + +A + G +W QLKK +QW+VEVY Sbjct: 323 LLDEGAHIYFCGLKGMMPGIQDTLKRVAERRGESWEQKLSQLKKNKQWHVEVY 375
>FENR2_ORYSA (P41345) Ferredoxin--NADP reductase, root isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 378 Score = 52.4 bits (124), Expect = 3e-07 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = -3 Query: 332 YVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 ++Y CGLKGM GI D + +A + G +W QLKK +QW+VEVY Sbjct: 332 HIYFCGLKGMMPGIQDTLKKVAEQRGESWEQKLSQLKKNKQWHVEVY 378
>FENR2_PEA (Q41014) Ferredoxin--NADP reductase, root isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 377 Score = 52.4 bits (124), Expect = 3e-07 Identities = 23/53 (43%), Positives = 34/53 (64%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 L + ++Y CGL+GM GI + + +A K G +W + QLKK +QW+VEVY Sbjct: 325 LLDNGAHIYFCGLRGMMPGIQETLKRVAEKRGESWEEKLSQLKKNKQWHVEVY 377
>FENR3_ORYSA (O23877) Ferredoxin--NADP reductase, embryo isozyme, chloroplast| precursor (EC 1.18.1.2) (FNR) Length = 378 Score = 52.0 bits (123), Expect = 4e-07 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = -3 Query: 332 YVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 ++Y CGLKGM GI D + +A + G +W QLKK +QW+VEVY Sbjct: 332 HIYFCGLKGMMPGIQDTLKRVAEQRGESWEQKLSQLKKNKQWHVEVY 378
>FENR_CHLRE (P53991) Ferredoxin--NADP reductase, chloroplast precursor (EC| 1.18.1.2) (FNR) Length = 354 Score = 51.2 bits (121), Expect = 6e-07 Identities = 22/53 (41%), Positives = 35/53 (66%) Frame = -3 Query: 350 LKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKKAEQWNVEVY 192 L + ++Y CGLKGM GI D++ +A + G+N+ ++ + LK QW+VEVY Sbjct: 302 LLDNGAHMYFCGLKGMMPGIQDMLERVAKEKGLNYEEWVEGLKHKNQWHVEVY 354
>CYSJ_ZYMMO (Q5NRM1) Sulfite reductase [NADPH] flavoprotein alpha-component (EC| 1.8.1.2) (SIR-FP) Length = 606 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = -3 Query: 350 LKKDNTYVYMCG-LKGMEKGIDDIMVDLAAKDG 255 +K+D Y+Y+CG M K +D ++D+ ++G Sbjct: 549 IKEDGAYLYVCGDATHMAKDVDKALIDIIRQEG 581
>Y013_NPVAC (P41423) Hypothetical 38.7 kDa protein in PK1-LEF1 intergenic| region Length = 327 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -3 Query: 272 LAAKDGINWLDYKKQLKKAEQWNVEVY*SSSSCHCH 165 +AA+D N DYKK A+QW+ V S C+ H Sbjct: 20 IAAEDRFNADDYKKYHINAQQWSHIVKWDSFKCNTH 55
>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor| Length = 2809 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = -3 Query: 185 SSSCHCHGRTCMLMFFPPSFHFYSRWILCKAQASAIYTPCI 63 S SC C PP FHF+ +CK + +PC+ Sbjct: 746 SYSCSC----------PPGFHFWQDTEICKDVDECLSSPCV 776
>FENR_IMPCY (P84210) Ferredoxin--NADP reductase, chloroplast (EC 1.18.1.2)| (FNR) (Fragments) Length = 37 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = -3 Query: 305 MEKGIDDIMVDLAAK 261 + +GIDDIMVDLAAK Sbjct: 23 VSRGIDDIMVDLAAK 37
>YS42_CAEEL (Q09371) Hypothetical protein ZK177.2| Length = 296 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -3 Query: 335 TYVYMCGLKGMEKGIDDIMVDLAAKDGINWLDYKKQLKK 219 T V C KG K ++ I+ + +K + W D K Q+KK Sbjct: 23 TTVINCVSKGRHKDVNAIVRETESKKIVPWSDAKVQIKK 61
>RL18_METKA (Q8TZA5) 50S ribosomal protein L18P| Length = 202 Score = 27.7 bits (60), Expect = 7.3 Identities = 8/19 (42%), Positives = 16/19 (84%) Frame = -3 Query: 326 YMCGLKGMEKGIDDIMVDL 270 Y+CGL+ +E+GI+ ++D+ Sbjct: 91 YLCGLRALERGIERAVIDI 109
>SRE27_CAEEL (O62488) Serpentine receptor class epsilon-27 (Protein sre-27)| Length = 364 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -2 Query: 198 GLLIIIIVSLP-WKDMHANVFPT*FSFLLQM 109 G+ + + S+P WK + N FP+ F FL+++ Sbjct: 298 GICTVAMYSIPAWKKRYKNAFPSIFCFLMRL 328 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,549,957 Number of Sequences: 219361 Number of extensions: 698693 Number of successful extensions: 1911 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 1882 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1910 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
