Clone Information

BLAST Search Result

Clone Name	rbaet92h09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ581529.1\|HVU581529 Hordeum vulgare xi gene for xylanase in...	545	e-152
2	emb\|AJ581531.1\|SCE581531 Secale cereale partial xi-IV gene for x...	345	7e-92
3	emb\|AJ697851.1\| Triticum aestivum xi-IB gene for xylanase inhibi...	337	2e-89
4	emb\|AJ581532.1\|SCE581532 Secale cereale xi-II/III gene for xylan...	337	2e-89
5	dbj\|AB178471.1\| Triticum aestivum Taxi-III gene for xylanase inh...	337	2e-89
6	dbj\|AB114627.1\| Triticum aestivum Taxi-III mRNA for xylanase inh...	337	2e-89
7	emb\|AJ697850.1\| Triticum aestivum partial xi-IIB gene for xylana...	321	1e-84
8	dbj\|AB114628.1\| Triticum aestivum Taxi-IV mRNA for xylanase inhi...	321	1e-84
9	emb\|AJ581530.1\|SCE581530 Secale cereale partial xi-I gene for xy...	319	4e-84
10	dbj\|AB114626.1\| Triticum aestivum taxi-I mRNA for xylanase inhib...	311	1e-81
11	emb\|AJ438880.1\|TAE438880 Triticum aestivum xiI gene for xylanase...	311	1e-81
12	emb\|AJ697849.1\| Triticum aestivum partial xi-IIA gene for xylana...	289	4e-75
13	gb\|BT009260.1\| Triticum aestivum clone wlk4.pk0017.d2:fis, full ...	281	9e-73
14	ref\|NM_190072.1\| Oryza sativa (japonica cultivar-group), predic...	78	3e-11
15	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
16	dbj\|AP003269.2\| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
17	dbj\|AK105806.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	78	3e-11
18	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	46	0.090
19	gb\|CP000081.1\| Leishmania major chromosome 35, complete sequence	44	0.36
20	gb\|CP000125.1\| Burkholderia pseudomallei 1710b chromosome II, co...	44	0.36
21	ref\|XM_838074.1\| Leishmania major strain Friedlin SNF-7-like pro...	44	0.36
22	ref\|XM_536297.2\| PREDICTED: Canis familiaris similar to monogeni...	44	0.36
23	emb\|BX571966.1\| Burkholderia pseudomallei strain K96243, chromos...	44	0.36
24	gb\|CP000011.2\| Burkholderia mallei ATCC 23344 chromosome 2, comp...	44	0.36
25	gb\|CP000085.1\| Burkholderia thailandensis E264 chromosome II, co...	44	0.36
26	gb\|AE017285.1\| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	42	1.4
27	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	40	5.6
28	gb\|AY181039.1\| Methylobacterium extorquens enolase (eno) gene, c...	40	5.6
29	ref\|XM_649986.1\| Entamoeba histolytica HM-1:IMSS patatin-like ph...	40	5.6
30	emb\|AL645817.1\| Human DNA sequence from clone RP1-2A2 on chromos...	40	5.6
31	gb\|AC135643.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.6
32	gb\|AE010300.1\| Leptospira interrogans serovar lai str. 56601 chr...	40	5.6
33	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
34	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
35	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
36	dbj\|AP003766.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
37	ref\|XM_561218.1\| Anopheles gambiae str. PEST ENSANGP00000026539 ...	40	5.6
38	emb\|Z84816.1\|HS2A2B Human DNA sequence from PAC 2A2 on chromosom...	40	5.6
39	gb\|AE016823.1\| Leptospira interrogans serovar Copenhageni str. F...	40	5.6
40	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.6
41	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.6
42	emb\|AL731883.4\|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa...	40	5.6
43	emb\|AL731785.2\|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa...	40	5.6
44	gb\|U55381.1\|LTU55381 Leishmania tropica P-glycoprotein E gene, c...	40	5.6
45	dbj\|AB007905.1\| Schizosaccharomyces pombe gene for Cad1 protein,...	40	5.6

>emb|AJ581529.1|HVU581529 Hordeum vulgare xi gene for xylanase inhibitor
          Length = 1255

 Score =  545 bits (275), Expect = e-152
 Identities = 281/283 (99%)
 Strand = Plus / Minus

                                                                        
Query: 133  ttcataaaaccgggcgctagcgttttttctaaaagttcaagttgccgcaacccgtgaagt 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 ttcataaaaccgggcgctagcgttttttctaaaagttcaagttgccgcaacccgtgaagt 1196

                                                                        
Query: 193  gcggcagcctgataaacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcct 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1195 gcggcagcctgataaacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcct 1136

                                                                        
Query: 253  ccatctgggcacctccgaggatcaccgccggcgccccgccgtcgccggcctccatctcca 312
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 ccatctgggcccctccgaggatcaccgccggcgccccgccgtcgccggcctccatctcca 1076

                                                                        
Query: 313  cgaacgcaacgcacgccgtccctggcttgacgtccaccatcgagttcttcccggtcatcg 372
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1075 cgaacgcaacgcacgccgtccccggcttgacgtccaccatcgagttcttcccggtcatcg 1016

                                                       
Query: 373  cccattcacccccgccgtcgagcgccagcaccacgttgggcac 415
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 cccattcacccccgccgtcgagcgccagcaccacgttgggcac 973

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>emb|AJ581531.1|SCE581531 Secale cereale partial xi-IV gene for xylanase inhibitor
          Length = 737

 Score =  345 bits (174), Expect = 7e-92
 Identities = 230/250 (92%), Gaps = 9/250 (3%)
 Strand = Plus / Minus

                                                                       
Query: 175 tgccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcga 234
           ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 583 tgccgcagcccgtaaagtgcggcagcctggtaaacccgagccgcttcttctccatgtcga 524

                                                                       
Query: 235 agtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgt 294
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 523 agtcgagcacgaagtcctccatctgggcccctccgaggatcaccgccggcgccctgccgt 464

                                                                       
Query: 295 cgccggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgt 345
           ||||||||||         |||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 463 cgccggcctccgcccccttcatctccacgaacgcaacgcacgccgtccccggcctgacgt 404

                                                                       
Query: 346 ccaccatcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcacca 405
           ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||  |
Sbjct: 403 ccaccatcgagttcttcccggtcatcgcccactcaccgccgccgtcgagcgccagcagga 344

                     
Query: 406 cgttgggcac 415
           ||||||||||
Sbjct: 343 cgttgggcac 334



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 2   caaaagaacttatttatcacatgcagta 29
           ||||||||||||||||| ||| ||||||
Sbjct: 656 caaaagaacttatttattacacgcagta 629

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>emb|AJ697851.1| Triticum aestivum xi-IB gene for xylanase inhibitor precursor, exon 1
          Length = 1206

 Score =  337 bits (170), Expect = 2e-89
 Identities = 229/250 (91%), Gaps = 9/250 (3%)
 Strand = Plus / Minus

                                                                        
Query: 175  tgccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcga 234
            ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1201 tgccgcaacccgtaaagtgcggcagcctgagaaacccgagccgcttcttctccatgtcga 1142

                                                                        
Query: 235  agtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgt 294
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 1141 agtcgagcacgaagtcctccatctgggctcctccgaggatcaccgccggcgccctgccgt 1082

                                                                        
Query: 295  cgccggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgt 345
            ||||||||||         |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1081 cgccggcctccacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgt 1022

                                                                        
Query: 346  ccaccatcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcacca 405
            ||||||||||||||||||||||||||||||| |||| |||||||||||  |||||| | |
Sbjct: 1021 ccaccatcgagttcttcccggtcatcgcccagtcactcccgccgtcgactgccagcccaa 962

                      
Query: 406  cgttgggcac 415
            |||| |||||
Sbjct: 961  cgttcggcac 952

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>emb|AJ581532.1|SCE581532 Secale cereale xi-II/III gene for xylanase inhibitor
          Length = 1245

 Score =  337 bits (170), Expect = 2e-89
 Identities = 229/250 (91%), Gaps = 9/250 (3%)
 Strand = Plus / Minus

                                                                        
Query: 175  tgccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcga 234
            ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1191 tgccgcagcccgtaaagtgcggcagcctggtaaacccgagccgcttcttctccatgtcga 1132

                                                                        
Query: 235  agtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgt 294
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 1131 agtcgagcacgaagtcctccatctgggcccctccgaggatcaccgccggcgccctgccgt 1072

                                                                        
Query: 295  cgccggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgt 345
            ||||||||||         ||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 1071 cgccggcctccacccccttcatctccacgaacgcgacgcacgccgtccccggcttgacgt 1012

                                                                        
Query: 346  ccaccatcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcacca 405
            ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||  |
Sbjct: 1011 ccaccatggagttcttcccggtcatggcccactcacccccgccgtcgagcgccagcagga 952

                      
Query: 406  cgttgggcac 415
            ||||||||||
Sbjct: 951  cgttgggcac 942

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>dbj|AB178471.1| Triticum aestivum Taxi-III gene for xylanase inhibitor, complete cds,
            upstream region
          Length = 2322

 Score =  337 bits (170), Expect = 2e-89
 Identities = 229/250 (91%), Gaps = 9/250 (3%)
 Strand = Plus / Minus

                                                                        
Query: 175  tgccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcga 234
            ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2277 tgccgcaacccgtaaagtgcggcagcctgagaaacccgagccgcttcttctccatgtcga 2218

                                                                        
Query: 235  agtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgt 294
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 2217 agtcgagcacgaagtcctccatctgggctcctccgaggatcaccgccggcgccctgccgt 2158

                                                                        
Query: 295  cgccggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgt 345
            ||||||||||         |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2157 cgccggcctccacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgt 2098

                                                                        
Query: 346  ccaccatcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcacca 405
            ||||||||||||||||||||||||||||||| |||| |||||||||||  |||||| | |
Sbjct: 2097 ccaccatcgagttcttcccggtcatcgcccagtcactcccgccgtcgactgccagcccaa 2038

                      
Query: 406  cgttgggcac 415
            |||| |||||
Sbjct: 2037 cgttcggcac 2028

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>dbj|AB114627.1| Triticum aestivum Taxi-III mRNA for xylanase inhibitor TAXI-III,
            complete cds
          Length = 1411

 Score =  337 bits (170), Expect = 2e-89
 Identities = 229/250 (91%), Gaps = 9/250 (3%)
 Strand = Plus / Minus

                                                                        
Query: 175  tgccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcga 234
            ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1280 tgccgcaacccgtaaagtgcggcagcctgagaaacccgagccgcttcttctccatgtcga 1221

                                                                        
Query: 235  agtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgt 294
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 1220 agtcgagcacgaagtcctccatctgggctcctccgaggatcaccgccggcgccctgccgt 1161

                                                                        
Query: 295  cgccggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgt 345
            ||||||||||         |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1160 cgccggcctccacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgt 1101

                                                                        
Query: 346  ccaccatcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcacca 405
            ||||||||||||||||||||||||||||||| |||| |||||||||||  |||||| | |
Sbjct: 1100 ccaccatcgagttcttcccggtcatcgcccagtcactcccgccgtcgactgccagcccaa 1041

                      
Query: 406  cgttgggcac 415
            |||| |||||
Sbjct: 1040 cgttcggcac 1031



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1    ccaaaagaacttatttatcacatgc 25
            |||||||||||||||||| ||||||
Sbjct: 1372 ccaaaagaacttatttattacatgc 1348

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>emb|AJ697850.1| Triticum aestivum partial xi-IIB gene for xylanase inhibitor
            precursor, exon 1
          Length = 1170

 Score =  321 bits (162), Expect = 1e-84
 Identities = 224/246 (91%), Gaps = 9/246 (3%)
 Strand = Plus / Minus

                                                                        
Query: 179  gcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaagtc 238
            ||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1140 gcaacccgtaaattgcggcagcctgctaaacccgagccgcttcttctccatgtcgaagtc 1081

                                                                        
Query: 239  gagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtcgcc 298
            |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 1080 gagcacgaagtcctccatctgggctcctccgaggatcaccgccggcgccctgccgtcgcc 1021

                                                                        
Query: 299  ggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgtccac 349
            ||||||         |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1020 ggcctccacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgtccac 961

                                                                        
Query: 350  catcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcaccacgtt 409
            ||||||||||||||||||||||||||| |||| |||||||||||  |||||| | |||||
Sbjct: 960  catcgagttcttcccggtcatcgcccagtcactcccgccgtcgactgccagcccaacgtt 901

                  
Query: 410  gggcac 415
             |||||
Sbjct: 900  cggcac 895

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>dbj|AB114628.1| Triticum aestivum Taxi-IV mRNA for xylanase inhibitor TAXI-IV,
            complete cds
          Length = 1387

 Score =  321 bits (162), Expect = 1e-84
 Identities = 224/246 (91%), Gaps = 9/246 (3%)
 Strand = Plus / Minus

                                                                        
Query: 179  gcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaagtc 238
            ||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1248 gcaacccgtaaattgcggcagcctgctaaacccgagccgcttcttctccatgtcgaagtc 1189

                                                                        
Query: 239  gagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtcgcc 298
            |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 1188 gagcacgaagtcctccatctgggctcctccgaggatcaccgccggcgccctgccgtcgcc 1129

                                                                        
Query: 299  ggcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgtccac 349
            ||||||         |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1128 ggcctccacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgtccac 1069

                                                                        
Query: 350  catcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcaccacgtt 409
            ||||||||||||||||||||||||||| |||| |||||||||||  |||||| | |||||
Sbjct: 1068 catcgagttcttcccggtcatcgcccagtcactcccgccgtcgactgccagcccaacgtt 1009

                  
Query: 410  gggcac 415
             |||||
Sbjct: 1008 cggcac 1003



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 93   tgtagataaacagacttatta 113
            |||||||||||||||||||||
Sbjct: 1317 tgtagataaacagacttatta 1297

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>emb|AJ581530.1|SCE581530 Secale cereale partial xi-I gene for xylanase inhibitor
          Length = 578

 Score =  319 bits (161), Expect = 4e-84
 Identities = 223/245 (91%), Gaps = 9/245 (3%)
 Strand = Plus / Minus

                                                                       
Query: 180 caacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaagtcg 239
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 578 caacccgtaaagtgcggcagcctggtaaacccgagccgcttcttctccatgtcgaagtcg 519

                                                                       
Query: 240 agcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtcgccg 299
           |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct: 518 agcacgaagtcctccatctgtgcccctccgaggatcaccgccggcgccctgccgtcgccg 459

                                                                       
Query: 300 gcctc---------catctccacgaacgcaacgcacgccgtccctggcttgacgtccacc 350
           |||||         ||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 458 gcctccacccccttcatctccacgaacgcaacgcatgccgtccccggcttgacgtccacc 399

                                                                       
Query: 351 atcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcaccacgttg 410
           |||||||||||||||||||| ||||| || || |||||||||||||||||||  ||||||
Sbjct: 398 atcgagttcttcccggtcatggcccagtccccgccgccgtcgagcgccagcaggacgttg 339

                
Query: 411 ggcac 415
           |||||
Sbjct: 338 ggcac 334

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>dbj|AB114626.1| Triticum aestivum taxi-I mRNA for xylanase inhibitor TAXI-I, complete
            cds
          Length = 1374

 Score =  311 bits (157), Expect = 1e-81
 Identities = 225/249 (90%), Gaps = 9/249 (3%)
 Strand = Plus / Minus

                                                                        
Query: 176  gccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaa 235
            |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1258 gccgcaacccgtaaagtgcggcagcctgctaaacccgagccgcttcttctccatgtcgaa 1199

                                                                        
Query: 236  gtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtc 295
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 1198 gtcgagcacgaagtcctccatctgggcccctccgaggatcaccgccggcgccctgccgtc 1139

                                                                        
Query: 296  gccgg---------cctccatctccacgaacgcaacgcacgccgtccctggcttgacgtc 346
            |||||         ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1138 gccggccgccactcccttcatctccacgaacgcaacgcacgccgtcccttgcttgacgtc 1079

                                                                        
Query: 347  caccatcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcaccac 406
            |||||||||||||||||||||||||| ||| ||||  ||||| |||||| |||||   ||
Sbjct: 1078 caccatcgagttcttcccggtcatcgtccagtcactgccgccatcgagccccagctggac 1019

                     
Query: 407  gttgggcac 415
            |||||||||
Sbjct: 1018 gttgggcac 1010

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>emb|AJ438880.1|TAE438880 Triticum aestivum xiI gene for xylanase inhibitor
          Length = 1298

 Score =  311 bits (157), Expect = 1e-81
 Identities = 225/249 (90%), Gaps = 9/249 (3%)
 Strand = Plus / Minus

                                                                        
Query: 176  gccgcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaa 235
            |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1250 gccgcaacccgtaaagtgcggcagcctgctaaacccgagccgcttcttctccatgtcgaa 1191

                                                                        
Query: 236  gtcgagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtc 295
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 1190 gtcgagcacgaagtcctccatctgggcccctccgaggatcaccgccggcgccctgccgtc 1131

                                                                        
Query: 296  gccgg---------cctccatctccacgaacgcaacgcacgccgtccctggcttgacgtc 346
            |||||         ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1130 gccggccgccactcccttcatctccacgaacgcaacgcacgccgtcccttgcttgacgtc 1071

                                                                        
Query: 347  caccatcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcaccac 406
            |||||||||||||||||||||||||| ||| ||||  ||||| |||||| |||||   ||
Sbjct: 1070 caccatcgagttcttcccggtcatcgtccagtcactgccgccatcgagccccagctggac 1011

                     
Query: 407  gttgggcac 415
            |||||||||
Sbjct: 1010 gttgggcac 1002

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>emb|AJ697849.1| Triticum aestivum partial xi-IIA gene for xylanase inhibitor
            precursor, exon 1
          Length = 1170

 Score =  289 bits (146), Expect = 4e-75
 Identities = 220/246 (89%), Gaps = 9/246 (3%)
 Strand = Plus / Minus

                                                                        
Query: 179  gcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaagtc 238
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1140 gcaacccgtaaagtgcggcagcctgagaaacccgagccgcttcttctccatgtcgaagtc 1081

                                                                        
Query: 239  gagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtcgcc 298
            |||||||||||||||||||||||| ||||| ||||||||||||||||| | ||| |||||
Sbjct: 1080 gagcacgaagtcctccatctgggctcctcccaggatcaccgccggcgcactgccatcgcc 1021

                                                                        
Query: 299  gg---------cctccatctccacgaacgcaacgcacgccgtccctggcttgacgtccac 349
            ||         ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1020 ggcatcaacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgtccac 961

                                                                        
Query: 350  catcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcaccacgtt 409
            ||| |||||||||||||||| |||||| |||| ||||||||| ||| ||||||  |||||
Sbjct: 960  cattgagttcttcccggtcagcgcccagtcactcccgccgtcaagctccagcaggacgtt 901

                  
Query: 410  gggcac 415
            ||||||
Sbjct: 900  gggcac 895

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>gb|BT009260.1| Triticum aestivum clone wlk4.pk0017.d2:fis, full insert mRNA
           sequence
          Length = 1343

 Score =  281 bits (142), Expect = 9e-73
 Identities = 219/246 (89%), Gaps = 9/246 (3%)
 Strand = Plus / Plus

                                                                       
Query: 179 gcaacccgtgaagtgcggcagcctgataaacccgagccgcttcttctccatgtcgaagtc 238
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 148 gcaacccgtaaagtgcggcagcctgagaaacccgagccgcttcttctccatgtcgaagtc 207

                                                                       
Query: 239 gagcacgaagtcctccatctgggcacctccgaggatcaccgccggcgccccgccgtcgcc 298
           |||||||||||||||||||||||| ||||| || |||||||||||||| | ||| |||||
Sbjct: 208 gagcacgaagtcctccatctgggctcctcccagaatcaccgccggcgcactgccatcgcc 267

                                                                       
Query: 299 gg---------cctccatctccacgaacgcaacgcacgccgtccctggcttgacgtccac 349
           ||         ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 268 ggcatcaacccccttcatctccacgaacgcaacgcacgccgtccccggcttgacgtccac 327

                                                                       
Query: 350 catcgagttcttcccggtcatcgcccattcacccccgccgtcgagcgccagcaccacgtt 409
           ||| |||||||||||||||| |||||| |||| ||||||||| ||| ||||||  |||||
Sbjct: 328 cattgagttcttcccggtcagcgcccagtcactcccgccgtcaagctccagcaggacgtt 387

                 
Query: 410 gggcac 415
           ||||||
Sbjct: 388 gggcac 393

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>ref|NM_190072.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1260

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 137/169 (81%), Gaps = 3/169 (1%)
 Strand = Plus / Minus

                                                                        
Query: 207  aacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcctccatctgggcacct 266
            |||||||||||||||||||||  |||||| |  ||||  | || ||||||||||   |||
Sbjct: 1202 aacccgagccgcttcttctccgagtcgaactgcagcaacatgttctccatctggaaccct 1143

                                                                        
Query: 267  ccgaggatcaccgccggcgccc---cgccgtcgccggcctccatctccacgaacgcaacg 323
            |||||||||||||||||||  |   || ||||||||| || |||||||||||| || | |
Sbjct: 1142 ccgaggatcaccgccggcgaactggcggcgtcgccggacttcatctccacgaaggccagg 1083

                                                             
Query: 324  cacgccgtccctggcttgacgtccaccatcgagttcttcccggtcatcg 372
            |||||| | ||   ||| |||||||||||||||||  |||| |||||||
Sbjct: 1082 cacgccttgccccccttcacgtccaccatcgagttggtccccgtcatcg 1034

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 137/169 (81%), Gaps = 3/169 (1%)
 Strand = Plus / Plus

                                                                            
Query: 207      aacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcctccatctgggcacct 266
                |||||||||||||||||||||  |||||| |  ||||  | || ||||||||||   |||
Sbjct: 41134562 aacccgagccgcttcttctccgagtcgaactgcagcaacatgttctccatctggaaccct 41134621

                                                                            
Query: 267      ccgaggatcaccgccggcgccc---cgccgtcgccggcctccatctccacgaacgcaacg 323
                |||||||||||||||||||  |   || ||||||||| || |||||||||||| || | |
Sbjct: 41134622 ccgaggatcaccgccggcgaactggcggcgtcgccggacttcatctccacgaaggccagg 41134681

                                                                 
Query: 324      cacgccgtccctggcttgacgtccaccatcgagttcttcccggtcatcg 372
                |||||| | ||   ||| |||||||||||||||||  |||| |||||||
Sbjct: 41134682 cacgccttgccccccttcacgtccaccatcgagttggtccccgtcatcg 41134730

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>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504E02
          Length = 137468

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 137/169 (81%), Gaps = 3/169 (1%)
 Strand = Plus / Plus

                                                                         
Query: 207   aacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcctccatctgggcacct 266
             |||||||||||||||||||||  |||||| |  ||||  | || ||||||||||   |||
Sbjct: 31617 aacccgagccgcttcttctccgagtcgaactgcagcaacatgttctccatctggaaccct 31676

                                                                         
Query: 267   ccgaggatcaccgccggcgccc---cgccgtcgccggcctccatctccacgaacgcaacg 323
             |||||||||||||||||||  |   || ||||||||| || |||||||||||| || | |
Sbjct: 31677 ccgaggatcaccgccggcgaactggcggcgtcgccggacttcatctccacgaaggccagg 31736

                                                              
Query: 324   cacgccgtccctggcttgacgtccaccatcgagttcttcccggtcatcg 372
             |||||| | ||   ||| |||||||||||||||||  |||| |||||||
Sbjct: 31737 cacgccttgccccccttcacgtccaccatcgagttggtccccgtcatcg 31785

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>dbj|AK105806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B07, full
            insert sequence
          Length = 1404

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 137/169 (81%), Gaps = 3/169 (1%)
 Strand = Plus / Minus

                                                                        
Query: 207  aacccgagccgcttcttctccatgtcgaagtcgagcacgaagtcctccatctgggcacct 266
            |||||||||||||||||||||  |||||| |  ||||  | || ||||||||||   |||
Sbjct: 1214 aacccgagccgcttcttctccgagtcgaactgcagcaacatgttctccatctggaaccct 1155

                                                                        
Query: 267  ccgaggatcaccgccggcgccc---cgccgtcgccggcctccatctccacgaacgcaacg 323
            |||||||||||||||||||  |   || ||||||||| || |||||||||||| || | |
Sbjct: 1154 ccgaggatcaccgccggcgaactggcggcgtcgccggacttcatctccacgaaggccagg 1095

                                                             
Query: 324  cacgccgtccctggcttgacgtccaccatcgagttcttcccggtcatcg 372
            |||||| | ||   ||| |||||||||||||||||  |||| |||||||
Sbjct: 1094 cacgccttgccccccttcacgtccaccatcgagttggtccccgtcatcg 1046

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 385     cgccgtcgagcgccagcaccacg 407
               |||||||||||||||||||||||
Sbjct: 4534409 cgccgtcgagcgccagcaccacg 4534387

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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 221    cttctccatgtcgaagtcgagc 242
              ||||||||||||||||||||||
Sbjct: 282079 cttctccatgtcgaagtcgagc 282058

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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 210     ccgagccgcttcttctccatgtcgaa 235
               |||||||||||| |||||||||||||
Sbjct: 2572150 ccgagccgcttcgtctccatgtcgaa 2572125

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>ref|XM_838074.1| Leishmania major strain Friedlin SNF-7-like protein (LMJ_0990)
           partial mRNA
          Length = 675

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 221 cttctccatgtcgaagtcgagc 242
           ||||||||||||||||||||||
Sbjct: 525 cttctccatgtcgaagtcgagc 504

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>ref|XM_536297.2| PREDICTED: Canis familiaris similar to monogenic, audiogenic seizure
             susceptibility 1 (LOC479153), mRNA
          Length = 19440

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 61    gttgttattacagggagtgatc 82
             ||||||||||||||||||||||
Sbjct: 16585 gttgttattacagggagtgatc 16606

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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 210    ccgagccgcttcttctccatgtcgaa 235
              |||||||||||| |||||||||||||
Sbjct: 752192 ccgagccgcttcgtctccatgtcgaa 752167

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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 210    ccgagccgcttcttctccatgtcgaa 235
              |||||||||||| |||||||||||||
Sbjct: 483119 ccgagccgcttcgtctccatgtcgaa 483094

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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 210     ccgagccgcttcttctccatgtcgaa 235
               |||||||||||| |||||||||||||
Sbjct: 2259372 ccgagccgcttcgtctccatgtcgaa 2259397

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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 218     cttcttctccatgtcgaagtcgagcacga 246
               |||||||||||||||||| | ||||||||
Sbjct: 2698865 cttcttctccatgtcgaaatagagcacga 2698837

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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 226     ccatgtcgaagtcgagcacg 245
               ||||||||||||||||||||
Sbjct: 2779197 ccatgtcgaagtcgagcacg 2779216

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>gb|AY181039.1| Methylobacterium extorquens enolase (eno) gene, complete cds
          Length = 1290

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 389 gtcgagcgccagcaccacgt 408
           ||||||||||||||||||||
Sbjct: 726 gtcgagcgccagcaccacgt 707

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>ref|XM_649986.1| Entamoeba histolytica HM-1:IMSS patatin-like phospholipase,
           putative (37.t00005) partial mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 155 ttttttctaaaagttcaagt 174
           ||||||||||||||||||||
Sbjct: 79  ttttttctaaaagttcaagt 60

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>emb|AL645817.1| Human DNA sequence from clone RP1-2A2 on chromosome Xq21, complete
             sequence
          Length = 129249

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    aggattgttgttattacagg 74
             ||||||||||||||||||||
Sbjct: 37130 aggattgttgttattacagg 37111

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>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0023F01, complete sequence
          Length = 145009

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    ccccgccgtcgccggcctcc 305
              ||||||||||||||||||||
Sbjct: 138017 ccccgccgtcgccggcctcc 137998

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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
              sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    ttttttctaaaagttcaagt 174
              ||||||||||||||||||||
Sbjct: 450927 ttttttctaaaagttcaagt 450908

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 276      accgccggcgccccgccgtcgccg 299
                ||||||| ||||||||||||||||
Sbjct: 13022519 accgccgccgccccgccgtcgccg 13022496

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 286      ccccgccgtcgccggcctcc 305
                ||||||||||||||||||||
Sbjct: 26451703 ccccgccgtcgccggcctcc 26451722

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 267      ccgaggatcaccgccggcgc 286
                ||||||||||||||||||||
Sbjct: 28108458 ccgaggatcaccgccggcgc 28108439

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>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0009H10
          Length = 175754

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   ccgaggatcaccgccggcgc 286
             ||||||||||||||||||||
Sbjct: 39364 ccgaggatcaccgccggcgc 39345

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>ref|XM_561218.1| Anopheles gambiae str. PEST ENSANGP00000026539 (ENSANGG00000023275),
            partial mRNA
          Length = 1179

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  tccgaggatcaccgccggcg 285
            ||||||||||||||||||||
Sbjct: 1057 tccgaggatcaccgccggcg 1076

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>emb|Z84816.1|HS2A2B Human DNA sequence from PAC 2A2 on chromosome X contains ESTs
          Length = 96355

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aggattgttgttattacagg 74
             ||||||||||||||||||||
Sbjct: 59226 aggattgttgttattacagg 59245

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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
              chromosome I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    ttttttctaaaagttcaagt 174
              ||||||||||||||||||||
Sbjct: 448900 ttttttctaaaagttcaagt 448881

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 286      ccccgccgtcgccggcctcc 305
                ||||||||||||||||||||
Sbjct: 26776967 ccccgccgtcgccggcctcc 26776986

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 276      accgccggcgccccgccgtcgccg 299
                ||||||| ||||||||||||||||
Sbjct: 12976793 accgccgccgccccgccgtcgccg 12976770

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>emb|AL731883.4|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 148110

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 276   accgccggcgccccgccgtcgccg 299
             ||||||| ||||||||||||||||
Sbjct: 45451 accgccgccgccccgccgtcgccg 45474

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>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 178827

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 276   accgccggcgccccgccgtcgccg 299
             ||||||| ||||||||||||||||
Sbjct: 11722 accgccgccgccccgccgtcgccg 11699

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>gb|U55381.1|LTU55381 Leishmania tropica P-glycoprotein E gene, complete cds
          Length = 6316

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 271  ggatcaccgccggcgccccgccgt 294
            ||||||||||||||||| ||||||
Sbjct: 4660 ggatcaccgccggcgccgcgccgt 4637

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>dbj|AB007905.1| Schizosaccharomyces pombe gene for Cad1 protein, complete cds
          Length = 2343

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 115  gtattacaaacgattttattcata 138
            ||||||||||| ||||||||||||
Sbjct: 2090 gtattacaaactattttattcata 2067


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,203,984
Number of Sequences: 3902068
Number of extensions: 3203984
Number of successful extensions: 68831
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67796
Number of HSP's gapped (non-prelim): 1027
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result