ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet92f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ERMA_CORDI (P16898) rRNA adenine N-6-methyltransferase (EC 2.1.1... 30 2.9
2ILPR_BRALA (O02466) Insulin-like peptide receptor precursor (EC ... 29 3.7
3ZN444_HUMAN (Q8N0Y2) Zinc finger protein 444 (Endothelial zinc f... 29 4.9
4ACK2_BOVIN (O02742) Activated CDC42 kinase 2 (EC 2.7.10.2) (ACK-2) 29 4.9

>ERMA_CORDI (P16898) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein)
          Length = 253

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 332 RRQHPLHHPQLHGRAARRSWTGPAPRRPSCT 240
           RRQ   HH Q H     R  + P P  P CT
Sbjct: 214 RRQGCFHHVQKHNHGCAREESTPRPYLPDCT 244



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>ILPR_BRALA (O02466) Insulin-like peptide receptor precursor (EC 2.7.10.1) (ILP|
           receptor) [Contains: Insulin-like peptide receptor alpha
           chain; Insulin-like peptide receptor beta chain]
          Length = 1363

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +2

Query: 47  LHKNICS--ENNCNLQQSGDEAPTE*R---TNHQSNVTMPPAGRQLPPTPS 184
           LH N+    EN     +   E P   R   +N   NVT+P   R +PPTP+
Sbjct: 701 LHNNVYHKRENETRAGRRRRELPVTARPFYSNQTVNVTLPSTNRTVPPTPT 751



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>ZN444_HUMAN (Q8N0Y2) Zinc finger protein 444 (Endothelial zinc finger protein|
           2) (EZF-2) (Zinc finger and SCAN domain-containing
           protein 17)
          Length = 327

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 332 RRQHPLHHPQLHGRAARRSWTGPAP 258
           RR+H L H ++HGRAA  +    AP
Sbjct: 289 RREHVLRHQRIHGRAAASAQGAVAP 313



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>ACK2_BOVIN (O02742) Activated CDC42 kinase 2 (EC 2.7.10.2) (ACK-2)|
          Length = 747

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +2

Query: 59  ICSENNCNLQQSGDEAPTE*RTNH----QSNVTMPPAGRQ-LPPTPSW 187
           +CS N+  +       P++  TN+    +    +PPAG Q +PPTP W
Sbjct: 661 VCSINSTLVGAGVSAEPSQGETNYAFVPEPARLLPPAGGQPVPPTPEW 708


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,900,377
Number of Sequences: 219361
Number of extensions: 636886
Number of successful extensions: 1617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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