ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet92e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ELF1_DROME (P13002) Protein grainyhead (Protein grainy-head) (DN... 30 2.3
2PSAG_HORVU (Q00327) Photosystem I reaction center subunit V, chl... 28 6.7

>ELF1_DROME (P13002) Protein grainyhead (Protein grainy-head) (DNA-binding|
           protein ELF-1) (Element I-binding activity)
           (Transcription factor NTF-1)
          Length = 1333

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 19  PSHIHTYILMMVHHQRIQN**KHGGLQQQSRSGRHAGRQGRRTDQPKKGGSYPL 180
           P    T +L  VHH + Q   +    QQQ +   H  +Q    D    GG+ PL
Sbjct: 733 PPPATTTVLTSVHHHQQQQQQQQQHQQQQQQQQHHQQQQHHSQDGKSNGGATPL 786



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>PSAG_HORVU (Q00327) Photosystem I reaction center subunit V, chloroplast|
           precursor (PSI-G) (Photosystem I 9 kDa protein)
          Length = 143

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -1

Query: 182 SNGYDPPFFG 153
           SNGYDPPFFG
Sbjct: 134 SNGYDPPFFG 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,996,066
Number of Sequences: 219361
Number of extensions: 325794
Number of successful extensions: 879
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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