ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet92e03 |
|---|---|
| Clone Library Name | barley_pub |
>GI1L2_ARATH (Q9LYC1) Probable gibberellin receptor GID1L2 (EC 3.-.-.-)| (GID1-like protein 2) Length = 358 Score = 36.6 bits (83), Expect = 0.015 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = -2 Query: 385 DDPWINPLAAGAKTMRGLACRRVLMCLAETDVVRDRGRAYCDGLRASGWAGEVELLKVAG 206 D P NP ++++G+ + L+ +A D+V+D AY DGL+ +G + LK A Sbjct: 259 DHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQAT 318 Query: 205 QGHCFHLGN--FSC 170 G F N F C Sbjct: 319 IGFYFLPNNDHFHC 332
>GI1L1_ARATH (Q9MAA7) Probable gibberellin receptor GID1L1 (EC 3.-.-.-)| (GID1-like protein 1) Length = 345 Score = 35.0 bits (79), Expect = 0.043 Identities = 18/56 (32%), Positives = 34/56 (60%) Frame = -2 Query: 385 DDPWINPLAAGAKTMRGLACRRVLMCLAETDVVRDRGRAYCDGLRASGWAGEVELL 218 + P NP + K++ G++ + L+ +A D++RD AY +GL+ +G EV+L+ Sbjct: 259 EHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAG--QEVKLM 312
>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21| Length = 348 Score = 34.3 bits (77), Expect = 0.074 Identities = 29/74 (39%), Positives = 36/74 (48%) Frame = +3 Query: 120 YRFRNLAMASSCLTASSQEKLPRWKQWPCPATLSSSTSPAHPLALSPSQYARPRSRTTSV 299 Y+ R LA AS T R C +T S STS + P + P + AR RS + Sbjct: 176 YQQRQLARASHASTQPPPHPPAR-----CSSTHSQSTSSSSPSS-PPRKRARSRSASQDS 229 Query: 300 SARHMSTRRHASPR 341 SAR S+ HASPR Sbjct: 230 SARSSSS--HASPR 241
>GID1_ORYSA (Q6L545) Gibberellin receptor GID1 (EC 3.-.-.-)| (Gibberellin-insensitive dwarf protein 1) (Protein GIBBERELLIN INSENSITIVE DWARF1) Length = 354 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -2 Query: 385 DDPWINPLAAGAKTMRGLACRRVLMCLAETDVVRDRGRAYCDGLRASG 242 D P NP + + GL + L+ ++ D+ DR AY D LR G Sbjct: 266 DHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDG 313
>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) (Zfp-144) Length = 342 Score = 31.2 bits (69), Expect = 0.63 Identities = 21/55 (38%), Positives = 26/55 (47%) Frame = +3 Query: 132 NLAMASSCLTASSQEKLPRWKQWPCPATLSSSTSPAHPLALSPSQYARPRSRTTS 296 N + AS C + S + P PAT SS SPA P SPS + P + TS Sbjct: 249 NTSGASECESVSDKAPSPA----TLPATSSSLPSPATPSHGSPSSHGPPATHPTS 299
>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) Length = 344 Score = 31.2 bits (69), Expect = 0.63 Identities = 21/55 (38%), Positives = 26/55 (47%) Frame = +3 Query: 132 NLAMASSCLTASSQEKLPRWKQWPCPATLSSSTSPAHPLALSPSQYARPRSRTTS 296 N + AS C + S + P PAT SS SPA P SPS + P + TS Sbjct: 249 NTSGASECESVSDKAPSPA----TLPATSSSLPSPATPSHGSPSSHGPPATHPTS 299
>GBRA4_RAT (P28471) Gamma-aminobutyric-acid receptor alpha-4 subunit precursor| (GABA(A) receptor) Length = 552 Score = 31.2 bits (69), Expect = 0.63 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = +3 Query: 123 RFRNLAMASSCLTASSQEKLPRWKQWPCPATLSSSTSPAHPLALSPSQYARPR-SRTTSV 299 R R A+ S +S+ ++ A SS T+P LA SP+ ++R + T S Sbjct: 387 RKRTNALVHSESDVNSRTEVGNHSSKTTAAQESSETTPKAHLASSPNPFSRANAAETISA 446 Query: 300 SARHMSTRRHASPRIVFAPA 359 +AR +S+ SP PA Sbjct: 447 AARGLSSAASPSPHGTLQPA 466
>ARGJ_DEHE1 (Q3Z731) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 405 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = -2 Query: 391 GADDPWINPLAAGAKTMRGLACRRVLMCLAETDVVRDRGRAYCDGLRASGWAGEVELL 218 GAD W LAA ++ RV + L E+ V++ R D S W +VE++ Sbjct: 316 GADPNWGRILAAAGRSGADFDIERVDLYLGESRVLQKGQRTGADEKELSSWLKQVEVI 373
>SRGP1_MOUSE (Q91Z69) SLIT-ROBO Rho GTPase-activating protein 1 (srGAP1)| (Rho-GTPase-activating protein 13) (Fragment) Length = 714 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = +3 Query: 174 EKLPRWKQWPCPATLSSSTSPAHPLALSPSQYARPR-SRTTSVSARHMST 320 + L + K P PAT + S SP H +AL S+ P+ R+TS S+ MST Sbjct: 620 DTLEQVKNSPTPATSTESLSPLHNVALRGSE---PQIRRSTSSSSETMST 666
>V70K_PLRV1 (P17519) 69.7 kDa protein (ORF 2)| Length = 639 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/56 (26%), Positives = 23/56 (41%) Frame = +3 Query: 81 CGLKMPVSTRHGFYRFRNLAMASSCLTASSQEKLPRWKQWPCPATLSSSTSPAHPL 248 C H + FR + S+ S P +K W P++L+ +T P PL Sbjct: 17 CSTAKEAGFLHPAFNFRGTSTMSASSGDYSAAPTPLYKSWALPSSLNLTTQPPPPL 72
>TOC75_ORYSA (Q84Q83) Protein TOC75, chloroplast precursor (75 kDa translocon at| the outer-envelope-membrane of chloroplasts) Length = 817 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +3 Query: 216 LSSSTSPAHPLALSPSQYARPRSRTTSVSARHMSTRRHASP 338 L+S + PLA PS+ R R R+TSVSA ++ ++ P Sbjct: 3 LTSQSLFFSPLAAGPSRRVRGRGRSTSVSAAASASSHNSQP 43
>SRGP1_HUMAN (Q7Z6B7) SLIT-ROBO Rho GTPase-activating protein 1 (srGAP1)| (Rho-GTPase-activating protein 13) Length = 1085 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = +3 Query: 174 EKLPRWKQWPCPATLSSSTSPAHPLALSPSQYARPR-SRTTSVSARHMST 320 + L + K P PAT + S SP H +AL S+ P+ R+TS S+ MST Sbjct: 991 DTLEQVKNSPTPATSTESLSPLHNVALRSSE---PQIRRSTSSSSDTMST 1037
>NMCR_ENTCL (P52676) Carbapenem-hydrolyzing beta-lactamase transcriptional| activator Length = 295 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +2 Query: 23 SPDASKREYRSSDVARSCIMRSENARVHETWF 118 SP+ SK+ Y SD+ + C++RS WF Sbjct: 169 SPETSKKLYIPSDLKKVCLLRSYRKEEWNNWF 200
>V70K_PLRVW (P11622) 69.7 kDa protein (ORF 2)| Length = 639 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/63 (26%), Positives = 26/63 (41%) Frame = +3 Query: 81 CGLKMPVSTRHGFYRFRNLAMASSCLTASSQEKLPRWKQWPCPATLSSSTSPAHPLALSP 260 C +H + FR + S+ S P +K W P++L+ +T P PL Sbjct: 17 CSTAKEAGFQHPAFNFRGTSTMSALSGDYSAAPTPLYKSWALPSSLNLTTQPP-PLLTDR 75 Query: 261 SQY 269 S Y Sbjct: 76 SYY 78
>GCSP_SCHPO (Q09785) Putative glycine dehydrogenase [decarboxylating],| mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1017 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +3 Query: 105 TRHGFYRFRNLAMASSCLTASSQEKLP 185 +RH F RNL+++S+CL A + +K P Sbjct: 18 SRHLFLAKRNLSISSACLEAKNSQKFP 44
>H1_EUPEU (P32103) Histone H1, macronuclear| Length = 134 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +3 Query: 255 SPSQYARPRSRTTSVSARHMSTRRHASPRIVFAPAAS 365 +PS+ A R T AR ST+R A+ + APAA+ Sbjct: 52 TPSKSAGARKATKKAGARKASTKRSATKKTTAAPAAA 88
>CHI2_COCIM (P54197) Endochitinase 2 precursor (EC 3.2.1.14)| Length = 860 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/65 (35%), Positives = 31/65 (47%) Frame = +3 Query: 144 ASSCLTASSQEKLPRWKQWPCPATLSSSTSPAHPLALSPSQYARPRSRTTSVSARHMSTR 323 AS+ SSQ K TLS+ST+P+ P +SPS + S T S S ++TR Sbjct: 355 ASTSTQTSSQSTTMETK------TLSASTTPSSPSTVSPSSTMQTTS-TGSTSIETVTTR 407 Query: 324 RHASP 338 P Sbjct: 408 SQEPP 412
>MIG15_CAEEL (Q23356) Serine/threonine-protein kinase mig-15 (EC 2.7.11.1)| (Abnormal cell migration protein 15) Length = 1096 Score = 28.9 bits (63), Expect = 3.1 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 1/129 (0%) Frame = +3 Query: 9 PINPLPQMHRKENTEVQT*RVAASCGLKMPVSTRHGFYRFRNLAMASSCLTASSQEKLPR 188 P N P M ++++E +S + M + R GF + + +S ++L R Sbjct: 330 PNNRGPSMGIRDDSE-------SSSMIPMDNTLRKGFQKLQE---SSRGFAEPGAQQLRR 379 Query: 189 WKQWPCPATLSSSTSPAHPLALSPSQYARPRSRTTSVSARHMSTRRHA-SPRIVFAPAAS 365 Q P PA P S+Y PR ++ V R +S+R A PR A Sbjct: 380 LPQQPAPA----------PFQYQQSRYVEPRRESSEVKLRAVSSRGAADGPRHSPASRPR 429 Query: 366 GLIHGSSAP 392 + H +P Sbjct: 430 PVSHHQRSP 438
>LIPA4_RAT (Q91Z80) Liprin-alpha-4 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-4) (PTPRF-interacting protein alpha-4) (Fragment) Length = 1043 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +3 Query: 159 TASSQEKLPRWKQWPCPATLSSSTSPAHPLALSPSQYAR 275 TA +E WK P P L+++T+PA + L + R Sbjct: 369 TALREESAKDWKPAPLPGVLAATTTPALTVTLRSPMWTR 407
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +3 Query: 231 SPAHPLALSPSQYARPRSRTTSVSARHMSTRRHASPRIVFAPAASG 368 +PA P A SP+Q ARP + + R A+ R APAA G Sbjct: 64 APAKPGAPSPAQAARPAAPRPPAPKPAAAERPAAAERPAAAPAAPG 109
>EGR1_BRARE (P26632) Early growth response protein 1 (EGR-1) (Krox24)| Length = 511 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Frame = +3 Query: 201 PCPATLSSSTSPA-HPLALSPSQYARPRSRTTSVSARHMSTRRHAS-PRIVFAPAASGLI 374 P PA++ SSTS A HP + S S P S ++S S+ +S H S P +++ A + Sbjct: 130 PPPASIPSSTSQATHPSSSSTSSI--PSSSSSSTSSASLSCSVHQSEPNPIYSAAPT--- 184 Query: 375 HGSSAP 392 + S++P Sbjct: 185 YSSASP 190
>TTP_RAT (P47973) Tristetraproline (TTP) (Zinc finger protein 36) (Zfp-36)| (TIS11A protein) (TIS11) Length = 320 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Frame = +3 Query: 204 CPATLSSSTSPAHPLALSPSQYA----RPRSRTTSVSARHMSTRRHASPRIVFAPAASGL 371 C + SSS P L LSPS ++ P SR A S RR +P ++ P GL Sbjct: 204 CSFSPSSSPPPPGDLPLSPSAFSAAPGTPVSRRDPTPACCPSCRRSTTPSTIWGP-LGGL 262 Query: 372 IHGSSA 389 SA Sbjct: 263 ARSPSA 268
>AMPD3_MOUSE (O08739) AMP deaminase 3 (EC 3.5.4.6) (AMP deaminase isoform E)| (AMP deaminase H-type) (Heart-type AMPD) Length = 766 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Frame = +3 Query: 177 KLPRWKQWPCPATLSSSTSPAHPLA------LSPSQYARPRSRTTSVS 302 ++P + W P T S + SPA PL P+ YA P + ++S Sbjct: 89 QMPTQQDWKGPPTASPAMSPATPLVPGATSKPGPAPYAMPEYQRVTIS 136
>PARM1_RAT (Q6P9X9) Protein PARM-1 precursor (Prostatic androgen-repressed| message 1 protein) (Castration-induced prostatic apoptosis-related protein 1) (CIPAR-1) Length = 296 Score = 28.5 bits (62), Expect = 4.1 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Frame = +3 Query: 147 SSCLTASSQEKLPRWKQWPCPATLSSSTSPAHPLALSPSQYARPRSRTTSVSARHMSTRR 326 +S SQ + Q P A+ S +TSP+ PL + SV++ H ST Sbjct: 128 TSVPATGSQSPTLLFSQGPTSASTSPATSPSEPL-------------SASVTSNHSSTVN 174 Query: 327 HASPR-IVFAPAASGLIHGSS 386 + P APA+ H SS Sbjct: 175 NIQPTGAPMAPASPTEEHSSS 195
>OLIG3_MOUSE (Q6PFG8) Oligodendrocyte transcription factor 3 (Oligo3)| (Oligodendrocyte-specific bHLH transcription factor 3) (Basic helix-loop-helix domain-containing class B protein 7) Length = 273 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +3 Query: 189 WKQWPCPATLSSSTSPAHPLALSPSQYAR 275 W PCP T+ P H ALS + AR Sbjct: 235 WAGLPCPCTICQMPPPPHLSALSTANMAR 263
>NAGC_SHIFL (P0AF23) N-acetylglucosamine repressor| Length = 406 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -2 Query: 247 SGWAGEVELLKVAGQGHCFHLGNFSCDDAVRQDDAI-ARFLNL*K 116 +G GE+ ++V G H GNF C + + + AI R LNL K Sbjct: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK 283
>NAGC_ECOLI (P0AF20) N-acetylglucosamine repressor| Length = 406 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -2 Query: 247 SGWAGEVELLKVAGQGHCFHLGNFSCDDAVRQDDAI-ARFLNL*K 116 +G GE+ ++V G H GNF C + + + AI R LNL K Sbjct: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK 283
>NAGC_ECOL6 (P0AF21) N-acetylglucosamine repressor| Length = 406 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -2 Query: 247 SGWAGEVELLKVAGQGHCFHLGNFSCDDAVRQDDAI-ARFLNL*K 116 +G GE+ ++V G H GNF C + + + AI R LNL K Sbjct: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK 283
>NAGC_ECO57 (P0AF22) N-acetylglucosamine repressor| Length = 406 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -2 Query: 247 SGWAGEVELLKVAGQGHCFHLGNFSCDDAVRQDDAI-ARFLNL*K 116 +G GE+ ++V G H GNF C + + + AI R LNL K Sbjct: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK 283
>IPYR2_SCHPO (P87118) Putative inorganic pyrophosphatase C3A12.02 (EC 3.6.1.1)| (Pyrophosphate phosphohydrolase) (PPase) Length = 286 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 126 FRNLAMASSCLTASSQEKLPRWKQWPCPATLSSSTSPAHPL 248 F ++ + S T + ++PRW Q C +L TSP HP+ Sbjct: 38 FHDVPLTSDKDTFNMVTEIPRWTQAKCEISL---TSPFHPI 75
>ZBTB4_HUMAN (Q9P1Z0) Zinc finger and BTB domain-containing protein 4| (KAISO-like zinc finger protein 1) (KAISO-L1) Length = 1013 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = +3 Query: 207 PATLSSSTSPAHPLALSPSQYARPRSRTTSVSARHMSTRRHASPRIVFAPAAS 365 PAT ++ +PA A S S + S ++S SA S+ +SP PA+S Sbjct: 69 PATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASS 121
>TF7L1_XENTR (Q6GL68) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) Length = 553 Score = 28.1 bits (61), Expect = 5.3 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Frame = +3 Query: 207 PATLSSS-TSPAHPLALSPSQYARPRSRTTSVSARHMSTRRHASPRIVF-APAASGLIHG 380 PAT S++ SPA P A + S+ A+P S TT AR + H++ + +P +S L Sbjct: 445 PATPSAALASPAAPAA-THSEQAQPLSLTTKPEARAQLSLSHSAAFLASKSPPSSSLSGS 503 Query: 381 SSAP 392 S+P Sbjct: 504 LSSP 507
>OLIG3_HUMAN (Q7RTU3) Oligodendrocyte transcription factor 3 (Oligo3) (Basic| helix-loop-helix domain-containing class B protein 7) Length = 272 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +3 Query: 189 WKQWPCPATLSSSTSPAHPLALSPSQYAR 275 W PCP T+ P H ALS + AR Sbjct: 234 WAGLPCPCTICQMPPPPHLSALSTANMAR 262
>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein| kinase with no lysine 1) (Protein kinase, lysine-deficient 1) (Kinase deficient protein) Length = 2382 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/53 (28%), Positives = 25/53 (47%) Frame = +3 Query: 222 SSTSPAHPLALSPSQYARPRSRTTSVSARHMSTRRHASPRIVFAPAASGLIHG 380 S +PA P+A++ Q +P + +SV + H S P++SG G Sbjct: 1043 SQVAPAEPVAVAQPQATQPTTLASSVDSAHSDVASGMSDGNENVPSSSGRHEG 1095
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/39 (46%), Positives = 22/39 (56%) Frame = +3 Query: 225 STSPAHPLALSPSQYARPRSRTTSVSARHMSTRRHASPR 341 S S + + SPS ++RPR R S S R S RR SPR Sbjct: 283 SKSRSRSRSRSPS-HSRPRRRHRSRSRRRPSPRRRPSPR 320
>HPS4_MOUSE (Q99KG7) Hermansky-Pudlak syndrome 4 protein homolog (Light-ear| protein) (Le protein) Length = 671 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Frame = +3 Query: 201 PCPATLSSSTSPAHPLALSPSQYARPRSRTTSVSARHMSTRRHASP-------RIVFAPA 359 P P+++ + P HP+ + PS S SA S+R SP R F P+ Sbjct: 434 PLPSSMPVALPPQHPVGVEPSVEPYGNGAQESHSALPRSSRSPDSPGPSPSADRTGFKPS 493 Query: 360 ASG 368 SG Sbjct: 494 PSG 496
>ZEP2_HUMAN (P31629) Human immunodeficiency virus type I enhancer-binding protein| 2 (HIV-EP2) (MHC-binding protein 2) (MBP-2) Length = 2446 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = +3 Query: 252 LSPSQYARPRSRTT---SVSARHMSTRRHASPRIVFAP 356 LSP ++ PR +S R +S RRH SPR +P Sbjct: 2082 LSPMRHLSPRKEAALRREMSQRDVSPRRHLSPRRPVSP 2119
>POLG_TMEVG (P08545) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2303 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 82 HDAATRYV*TSVFSFRCIWGRGLIGQ 5 H+A TR V F+ CIWGR L+G+ Sbjct: 2011 HEAKTRIVDVPPFA-HCIWGRQLLGR 2035
>POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2303 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 82 HDAATRYV*TSVFSFRCIWGRGLIGQ 5 H+A TR V F+ CIWGR L+G+ Sbjct: 2011 HEAKTRIVDVPPFA-HCIWGRQLLGR 2035
>CAC1S_RAT (Q02485) Voltage-dependent L-type calcium channel alpha-1S subunit| (Voltage-gated calcium channel alpha subunit Cav1.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 3, skeletal muscle) (ROB1) (Fragment) Length = 1146 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/69 (27%), Positives = 27/69 (39%) Frame = +3 Query: 168 SQEKLPRWKQWPCPATLSSSTSPAHPLALSPSQYARPRSRTTSVSARHMSTRRHASPRIV 347 SQ ++P+ + P P LS P H P ++ S + S R H Sbjct: 1014 SQRRMPKGQVPPSPCQLSQEKHPVHEEGKGPRSWSTETSDSESFEERVPRNSAHKCT--- 1070 Query: 348 FAPAASGLI 374 APA + LI Sbjct: 1071 -APATTMLI 1078
>POLG_TMEVD (P13899) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2301 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 82 HDAATRYV*TSVFSFRCIWGRGLIGQ 5 H+A TR V F+ CIWGR L+G+ Sbjct: 2009 HEAKTRIVDVPPFA-HCIWGRQLLGR 2033
>GEI8_CAEEL (P34333) Gex-3-interacting protein 8| Length = 1780 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = -2 Query: 238 AGEVELLKVAG--QGHCFHLGNFSCDDAVRQDDAIARFLNL*K-PCLVDTGIFRPHDAAT 68 +GE+ + V +G CFH G FS + ++ + + L PCL D +F + A Sbjct: 38 SGEIGIFLVIQKWEGGCFHYGYFSFTNPLKVNSGLDLLLIFCSFPCLFDVLVFTFKELAR 97 Query: 67 RY 62 Y Sbjct: 98 EY 99
>TGT_STRP8 (P66910) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 380 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -2 Query: 259 GLRASGWAGEVELLKVAGQG----HCFHLGNFSCDDAVRQDDAIARFLNL*KPCLVDTGI 92 G +A+ E LK G G + +HL D+ + + + +F+N +P L D+G Sbjct: 40 GTQATVKTQSPEELKAIGSGIILSNTYHLWLRPGDELIARSGGLHKFMNWDQPILTDSGG 99 Query: 91 FRPHDAA 71 F+ + A Sbjct: 100 FQVYSLA 106
>TGT_STRP6 (Q5XE18) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 380 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -2 Query: 259 GLRASGWAGEVELLKVAGQG----HCFHLGNFSCDDAVRQDDAIARFLNL*KPCLVDTGI 92 G +A+ E LK G G + +HL D+ + + + +F+N +P L D+G Sbjct: 40 GTQATVKTQSPEELKAIGSGIILSNTYHLWLRPGDELIARSGGLHKFMNWDQPILTDSGG 99 Query: 91 FRPHDAA 71 F+ + A Sbjct: 100 FQVYSLA 106
>TGT_STRP3 (P66909) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 380 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -2 Query: 259 GLRASGWAGEVELLKVAGQG----HCFHLGNFSCDDAVRQDDAIARFLNL*KPCLVDTGI 92 G +A+ E LK G G + +HL D+ + + + +F+N +P L D+G Sbjct: 40 GTQATVKTQSPEELKAIGSGIILSNTYHLWLRPGDELIARSGGLHKFMNWDQPILTDSGG 99 Query: 91 FRPHDAA 71 F+ + A Sbjct: 100 FQVYSLA 106
>TGT_STRP1 (Q9A1L6) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 380 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -2 Query: 259 GLRASGWAGEVELLKVAGQG----HCFHLGNFSCDDAVRQDDAIARFLNL*KPCLVDTGI 92 G +A+ E LK G G + +HL D+ + + + +F+N +P L D+G Sbjct: 40 GTQATVKTQSPEELKAIGSGIILSNTYHLWLRPGDELIARSGGLHKFMNWDQPILTDSGG 99 Query: 91 FRPHDAA 71 F+ + A Sbjct: 100 FQVYSLA 106
>RBF1_CAEEL (P41885) Rabphilin-1| Length = 1106 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = +3 Query: 174 EKLPRWKQWPCPATLSSSTSPAHPLALSPSQYARPRSRTTSVSARHMSTRRHASPRIVFA 353 ++LP + TL +++S A PL+ +P S S+ M+T + ASP + + Sbjct: 333 DRLPYYVPVTTNGTLPNASSAATPLSGTPGGAGPQPMTMPSTSSCQMTTPKWASPGVCNS 392 Query: 354 P 356 P Sbjct: 393 P 393
>WASF3_MOUSE (Q8VHI6) Wiskott-Aldrich syndrome protein family member 3| (WASP-family protein member 3) (WAVE-3 protein) Length = 501 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +3 Query: 207 PATLSSSTSPAHPLALSPSQYARPRSRTTSVSARHMSTRRHASP 338 PAT S + A PL + +Q A R +S SARHM+ R P Sbjct: 262 PATPSYTAGDA-PLHGTTNQGAEHEYRPSSASARHMALNRPQQP 304
>ABLM1_MOUSE (Q8K4G5) Actin-binding LIM protein 1 (Actin-binding LIM protein| family member 1) (abLIM-1) Length = 861 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = +3 Query: 213 TLSSSTSPAH---PLALSPSQYARPRSRTTSVSARHMSTRRHASPRIVFAPAASG 368 T ++S SP H P LSP + RT+S S+ H +R + R F P G Sbjct: 511 TPTTSRSPQHFHRPELLSPGVHRWSPLRTSSFSSTHSDSRPNPPFRHHFLPHVKG 565
>HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-like protein)| Length = 3969 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Frame = +3 Query: 165 SSQEKLPRWKQWPCPATLSSSTSPAHPLALSPSQ----YARPRSRTTSVSARHMSTRRHA 332 SSQ+ P ++ P P SS P P+ + P S+ + A S+++ + Sbjct: 1240 SSQKPTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVS 1299 Query: 333 SPRIVFAP 356 P +V P Sbjct: 1300 QPALVIPP 1307
>CAC1B_MOUSE (O55017) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2327 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 216 LSSSTSPAHPLALSPSQYARPRSRTTSVSARH 311 +SS TS +HPL P+ Y +T V ARH Sbjct: 2285 VSSLTSQSHPLRRVPNGYHCTLGLSTGVRARH 2316
>CAC1B_RAT (Q02294) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2336 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 216 LSSSTSPAHPLALSPSQYARPRSRTTSVSARH 311 +SS TS +HPL P+ Y +T V ARH Sbjct: 2294 VSSLTSQSHPLRRVPNGYHCTLGLSTGVRARH 2325 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,510,097 Number of Sequences: 219361 Number of extensions: 857463 Number of successful extensions: 3009 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 2893 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3003 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
