| Clone Name | rbaet92c08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15694.1|HVBRNZ1H Barley bronze 1 homologue for UDPglucose flavonol 3,0 glucosyl transferase Length = 2326 Score = 696 bits (351), Expect = 0.0 Identities = 357/359 (99%) Strand = Plus / Minus Query: 1 gggaggaagaagatcacgccgtcggatggatatctgacggtaaaaacaaagtgacttaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2162 gggaggaagaagatcacgccgtcggatggatatctgacggtaaaaacaaagtgacttaca 2103 Query: 61 cacacataaaaaagacggtcgacttacacgtaatcggtcccatagagttctaagcatttg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2102 cacacataaaaaagacggtcgacttacacgtaatcggtcccatagagttctaagcatttg 2043 Query: 121 tacgagtacaagatcacacccgacaaactatctcgacaaactcgtcgaagttcttcctgc 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2042 tacgagtacacgatcacacccgacaaactatctcgacaaactcgtcgaagttcttcctgc 1983 Query: 181 agccgccgtcgggctcgaacgccttgcccaccatggcctgcagctcctgcgcctttgccc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1982 agccgccgtcgggctcgaacgccttgcccaccatggcctgcagctcctgcgcctttgccc 1923 Query: 241 tcatccgctccccatcctccccgcgcagcagcgtcgccaccgcgtttgccacggcgccgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1922 tcatccgctccccatcctccccgcgcagcagcgtcgccaccgcgtttgccacggcgccgc 1863 Query: 301 gcgtcatcggcccgtcgaacgccgtgccgaagccccacacgctggccaccgaccgcgcg 359 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1862 gcgtcatcggcccgtcgaacgccgtgccgaagccccacacactggccaccgaccgcgcg 1804
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 127 bits (64), Expect = 3e-26 Identities = 177/214 (82%), Gaps = 3/214 (1%) Strand = Plus / Minus Query: 149 tatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcga---acgcctt 205 ||||||||| |||| | |||||||||||||||||| ||||||||||||| ||||| Sbjct: 4660193 tatctcgacgaacttggcgaagttcttcctgcagcttccgtcgggctcgacgaacgccga 4660134 Query: 206 gcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctccccgcg 265 ||||| | ||||||| |||||||||| ||||||||||| ||| |||||||||| Sbjct: 4660133 cgccaccttcgcctgcaactcctgcgcccgcgccctcatccggcgcccgtcctccccgcc 4660074 Query: 266 cagcagcgtcgccaccgcgtttgccacggcgccgcgcgtcatcggcccgtcgaacgccgt 325 | |||| ||||||||| | |||||| ||||||||||||||| ||||||||||||||| Sbjct: 4660073 gacgagcgacgccaccgccgtggccacgccgccgcgcgtcatcgccccgtcgaacgccgt 4660014 Query: 326 gccgaagccccacacgctggccaccgaccgcgcg 359 ||||| ||||||||| || ||||||||||||| Sbjct: 4660013 cccgaacccccacacgtgggacaccgaccgcgcg 4659980
>dbj|AP004738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0090D06 Length = 174500 Score = 127 bits (64), Expect = 3e-26 Identities = 177/214 (82%), Gaps = 3/214 (1%) Strand = Plus / Minus Query: 149 tatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcga---acgcctt 205 ||||||||| |||| | |||||||||||||||||| ||||||||||||| ||||| Sbjct: 147557 tatctcgacgaacttggcgaagttcttcctgcagcttccgtcgggctcgacgaacgccga 147498 Query: 206 gcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctccccgcg 265 ||||| | ||||||| |||||||||| ||||||||||| ||| |||||||||| Sbjct: 147497 cgccaccttcgcctgcaactcctgcgcccgcgccctcatccggcgcccgtcctccccgcc 147438 Query: 266 cagcagcgtcgccaccgcgtttgccacggcgccgcgcgtcatcggcccgtcgaacgccgt 325 | |||| ||||||||| | |||||| ||||||||||||||| ||||||||||||||| Sbjct: 147437 gacgagcgacgccaccgccgtggccacgccgccgcgcgtcatcgccccgtcgaacgccgt 147378 Query: 326 gccgaagccccacacgctggccaccgaccgcgcg 359 ||||| ||||||||| || ||||||||||||| Sbjct: 147377 cccgaacccccacacgtgggacaccgaccgcgcg 147344
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0698A06 Length = 156514 Score = 127 bits (64), Expect = 3e-26 Identities = 177/214 (82%), Gaps = 3/214 (1%) Strand = Plus / Minus Query: 149 tatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcga---acgcctt 205 ||||||||| |||| | |||||||||||||||||| ||||||||||||| ||||| Sbjct: 22792 tatctcgacgaacttggcgaagttcttcctgcagcttccgtcgggctcgacgaacgccga 22733 Query: 206 gcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctccccgcg 265 ||||| | ||||||| |||||||||| ||||||||||| ||| |||||||||| Sbjct: 22732 cgccaccttcgcctgcaactcctgcgcccgcgccctcatccggcgcccgtcctccccgcc 22673 Query: 266 cagcagcgtcgccaccgcgtttgccacggcgccgcgcgtcatcggcccgtcgaacgccgt 325 | |||| ||||||||| | |||||| ||||||||||||||| ||||||||||||||| Sbjct: 22672 gacgagcgacgccaccgccgtggccacgccgccgcgcgtcatcgccccgtcgaacgccgt 22613 Query: 326 gccgaagccccacacgctggccaccgaccgcgcg 359 ||||| ||||||||| || ||||||||||||| Sbjct: 22612 cccgaacccccacacgtgggacaccgaccgcgcg 22579
>gb|AF391808.2| Zea mays chromosome 9S bz genomic region strain McC Length = 226001 Score = 119 bits (60), Expect = 6e-24 Identities = 114/132 (86%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 116582 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 116523 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||||||| ||| |||||||||||||| |||| |||||| Sbjct: 116522 gcctcggccaccaaggcctgcagctccttggcccttgccctcatccgcgccccttcctcc 116463 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 116462 ccgcgcagcagc 116451
>gb|AF448416.1| Zea mays B73 chromosome 9S bz genomic region Length = 106186 Score = 119 bits (60), Expect = 6e-24 Identities = 114/132 (86%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 34462 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 34403 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||||||| ||| |||||||||||||| |||| |||||| Sbjct: 34402 gcctcggccaccaaggcctgcagctccttggcccttgccctcatccgcgccccttcctcc 34343 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 34342 ccgcgcagcagc 34331
>emb|X07941.1|ZMBZR Maize bronze bz-R gene resulting in absence of UDPglucose flavonoid glycosyl transferase Length = 3181 Score = 119 bits (60), Expect = 6e-24 Identities = 114/132 (86%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 2468 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 2409 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||||||| ||| |||||||||||||| |||| |||||| Sbjct: 2408 gcctcggccaccaaggcctgcagctccttggcccttgccctcatccgcgccccttcctcc 2349 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 2348 ccgcgcagcagc 2337
>gb|AY191010.1| Zea mays Bz(Dp26)-m1 bz locus tandem duplication sequence Length = 8867 Score = 119 bits (60), Expect = 6e-24 Identities = 114/132 (86%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 6143 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 6084 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||||||| ||| |||||||||||||| |||| |||||| Sbjct: 6083 gcctcggccaccaaggcctgcagctccttggcccttgccctcatccgcgccccttcctcc 6024 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 6023 ccgcgcagcagc 6012 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 8475 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 8416 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 8415 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 8356 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 8355 ccgcgcagcagc 8344
>gb|AY191009.1| Zea mays Bz(Dp26) bz locus tandem duplication sequence Length = 4294 Score = 119 bits (60), Expect = 6e-24 Identities = 114/132 (86%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1570 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1511 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||||||| ||| |||||||||||||| |||| |||||| Sbjct: 1510 gcctcggccaccaaggcctgcagctccttggcccttgccctcatccgcgccccttcctcc 1451 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 1450 ccgcgcagcagc 1439 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 3902 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 3843 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 3842 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 3783 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 3782 ccgcgcagcagc 3771
>emb|X13500.1|ZMMCCBZ1 Zea mays (Bz-McC allele) bz1 gene for UFGT (UDPglucose:flavonol 3-0-glucosyltransferase) Length = 2919 Score = 119 bits (60), Expect = 6e-24 Identities = 114/132 (86%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 2155 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 2096 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||||||| ||| |||||||||||||| |||| |||||| Sbjct: 2095 gcctcggccaccaaggcctgcagctccttggcccttgccctcatccgcgccccttcctcc 2036 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 2035 ccgcgcagcagc 2024
>gb|DQ335126.1| Zea mays UDPG-flavonoid 3-oxy glucosyl transferase (bronze) mRNA, bronze-Bz1-McC allele, complete cds Length = 1726 Score = 119 bits (60), Expect = 6e-24 Identities = 114/132 (86%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1484 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1425 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||||||| ||| |||||||||||||| |||| |||||| Sbjct: 1424 gcctcggccaccaaggcctgcagctccttggcccttgccctcatccgcgccccttcctcc 1365 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 1364 ccgcgcagcagc 1353
>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence Length = 203581 Score = 119 bits (60), Expect = 6e-24 Identities = 114/132 (86%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 43211 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 43152 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||||||| ||| |||||||||||||| |||| |||||| Sbjct: 43151 gcctcggccaccaaggcctgcagctccttggcccttgccctcatccgcgccccttcctcc 43092 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 43091 ccgcgcagcagc 43080
>emb|X07937.1|ZMBZW22 Maize Bz-W22 gene for UDPglucose flavonoid glycosyl transferase Length = 2908 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 2397 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 2338 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 2337 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 2278 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 2277 ccgcgcagcagc 2266
>gb|AY167679.1| Zea mays UDP-glucose flavonoid-3-O-glucosyltransferase-like (bz) gene, bz-E9 allele, partial sequence Length = 1521 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1514 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1455 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 1454 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 1395 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 1394 ccgcgcagcagc 1383
>gb|AY167678.1| Zea mays UDP-glucose flavonoid-3-O-glucosyltransferase-like (bz) gene, bz-E8 allele, partial sequence Length = 1521 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1514 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1455 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 1454 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 1395 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 1394 ccgcgcagcagc 1383
>gb|AY167677.1| Zea mays UDP-glucose flavonoid-3-O-glucosyltransferase-like (bz) gene, bz-E7 allele, partial sequence Length = 1521 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1514 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1455 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 1454 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 1395 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 1394 ccgcgcagcagc 1383
>gb|AY167676.1| Zea mays UDP-glucose flavonoid-3-O-glucosyltransferase-like (bz) gene, bz-E6 allele, partial sequence Length = 1521 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1514 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1455 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 1454 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 1395 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 1394 ccgcgcagcagc 1383
>gb|AY167675.1| Zea mays mutant UDP-glucose flavonoid-3-O-glucosyltransferase (bz) gene, bz-E5 allele, complete cds Length = 1521 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1514 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1455 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 1454 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 1395 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 1394 ccgcgcagcagc 1383
>gb|AY167674.1| Zea mays UDP-glucose flavonoid-3-O-glucosyltransferase-like (bz) gene, bz-E4 allele, partial sequence Length = 1521 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1514 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1455 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 1454 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 1395 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 1394 ccgcgcagcagc 1383
>gb|AY167673.1| Zea mays UDP-glucose flavonoid-3-O-glucosyltransferase-like (bz) gene, bz-E3 allele, partial sequence Length = 1521 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1514 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1455 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 1454 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 1395 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 1394 ccgcgcagcagc 1383
>gb|AY167672.1| Zea mays mutant UDP-glucose flavonoid-3-O-glucosyltransferase (bz) gene, bz-E2 allele, complete cds Length = 1521 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1514 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1455 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 1454 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 1395 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 1394 ccgcgcagcagc 1383
>emb|X13502.1|ZMW22BZ1 Maize (Bz-W22 allele) bronze-1 cDNA for UFGT (UDPglucose:flavonol 3-0-glucosyltransferase) Length = 1594 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1486 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1427 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||| ||| ||| |||||||||||||| |||| |||||| Sbjct: 1426 gcctcggccaccaaggcctgcagcaccttggcccttgccctcatccgcgccccttcctcc 1367 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 1366 ccgcgcagcagc 1355
>emb|X13501.1|ZMMC2BZ1 Maize (Bz-McC2 allele) bz1 gene for UFGT (UDPglucose:flavonol 3-0-glucosyltransferase) Length = 2531 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 2158 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 2099 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctcatccgctccccatcctcc 260 |||| | |||||| |||||||||||||| ||| |||||||||||| | |||| |||||| Sbjct: 2098 gcctcggccaccaaggcctgcagctccttggcccttgccctcatccccgccccttcctcc 2039 Query: 261 ccgcgcagcagc 272 |||||||||||| Sbjct: 2038 ccgcgcagcagc 2027
>gb|AY110944.1| Zea mays CL2075_1 mRNA sequence Length = 1416 Score = 75.8 bits (38), Expect = 9e-11 Identities = 86/102 (84%) Strand = Plus / Minus Query: 141 cgacaaactatctcgacaaactcgtcgaagttcttcctgcagccgccgtcgggctcgaac 200 ||||| ||||||||||| ||| |||||||||||||||||| | ||| | ||| ||||| Sbjct: 1409 cgacagactatctcgacgaacctgtcgaagttcttcctgcactcaccgcctggcccgaac 1350 Query: 201 gccttgcccaccatggcctgcagctcctgcgcctttgccctc 242 |||| | |||||| |||||||||||||| ||| |||||||| Sbjct: 1349 gcctcggccaccaaggcctgcagctccttggcccttgccctc 1308
>gb|AF355378.1|AF355378 Zea mays bz-m2(Ac) mutable allele, genomic sequence Length = 5772 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 218 ctgcagctcctgcgcctttgccctcatccgctccccatcctccccgcgcagcagc 272 ||||||||||| ||| |||||||||||||| |||| |||||||||||||||||| Sbjct: 5772 ctgcagctccttggcccttgccctcatccgcgccccttcctccccgcgcagcagc 5718
>ref|XM_476626.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1604 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 186 ccgtcgggctcgaacgccttgcccaccatggcctgcagctcc 227 |||||||||||||||||| | ||||||||||||| |||||| Sbjct: 1432 ccgtcgggctcgaacgccgagaccaccatggcctgaagctcc 1391 Score = 44.1 bits (22), Expect = 0.31 Identities = 37/42 (88%) Strand = Plus / Minus Query: 267 agcagcgtcgccaccgcgtttgccacggcgccgcgcgtcatc 308 ||||||| ||||||||| | ||||||| ||||||||||||| Sbjct: 1345 agcagcgacgccaccgcctctgccacgcggccgcgcgtcatc 1304
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 186 ccgtcgggctcgaacgccttgcccaccatggcctgcagctcc 227 |||||||||||||||||| | ||||||||||||| |||||| Sbjct: 2522381 ccgtcgggctcgaacgccgagaccaccatggcctgaagctcc 2522340 Score = 44.1 bits (22), Expect = 0.31 Identities = 37/42 (88%) Strand = Plus / Minus Query: 267 agcagcgtcgccaccgcgtttgccacggcgccgcgcgtcatc 308 ||||||| ||||||||| | ||||||| ||||||||||||| Sbjct: 2522294 agcagcgacgccaccgcctctgccacgcggccgcgcgtcatc 2522253
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 186 ccgtcgggctcgaacgccttgcccaccatggcctgcagctcc 227 |||||||||||||||||| | ||||||||||||| |||||| Sbjct: 87361 ccgtcgggctcgaacgccgagaccaccatggcctgaagctcc 87320 Score = 44.1 bits (22), Expect = 0.31 Identities = 37/42 (88%) Strand = Plus / Minus Query: 267 agcagcgtcgccaccgcgtttgccacggcgccgcgcgtcatc 308 ||||||| ||||||||| | ||||||| ||||||||||||| Sbjct: 87274 agcagcgacgccaccgcctctgccacgcggccgcgcgtcatc 87233
>dbj|AK106312.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D06, full insert sequence Length = 1604 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 186 ccgtcgggctcgaacgccttgcccaccatggcctgcagctcc 227 |||||||||||||||||| | ||||||||||||| |||||| Sbjct: 1432 ccgtcgggctcgaacgccgagaccaccatggcctgaagctcc 1391 Score = 44.1 bits (22), Expect = 0.31 Identities = 37/42 (88%) Strand = Plus / Minus Query: 267 agcagcgtcgccaccgcgtttgccacggcgccgcgcgtcatc 308 ||||||| ||||||||| | ||||||| ||||||||||||| Sbjct: 1345 agcagcgacgccaccgcctctgccacgcggccgcgcgtcatc 1304
>ref|NM_001029884.1| Homo sapiens pleckstrin homology domain containing, family G (with RhoGef domain) member 1 (PLEKHG1), mRNA Length = 7237 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 176 cctgcagccgccgtcgggctcg 197 |||||||||||||||||||||| Sbjct: 61 cctgcagccgccgtcgggctcg 40
>emb|AL450344.4| Human DNA sequence from clone RP11-136K14 on chromosome 6 Contains three novel genes, the 5' end of a novel gene (contains FLJ31738 and KIAA1209) and a CpG island, complete sequence Length = 150005 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 176 cctgcagccgccgtcgggctcg 197 |||||||||||||||||||||| Sbjct: 54296 cctgcagccgccgtcgggctcg 54275
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 262 cgcgcagcagcgtcgccaccgc 283 |||||||||||||||||||||| Sbjct: 4891186 cgcgcagcagcgtcgccaccgc 4891165
>gb|AC134325.2| Mus musculus BAC clone RP24-235L14 from chromosome 5, complete sequence Length = 106345 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 ttacacacacataaaaaagac 76 ||||||||||||||||||||| Sbjct: 45767 ttacacacacataaaaaagac 45747
>ref|XM_543284.2| PREDICTED: Canis familiaris similar to UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 (LOC486158), mRNA Length = 1593 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 ttcttcctgcagccgccgtcgggc 194 |||||||||||||||||| ||||| Sbjct: 404 ttcttcctgcagccgccggcgggc 381
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 cctccccgcgcagcagcgtc 275 |||||||||||||||||||| Sbjct: 2006099 cctccccgcgcagcagcgtc 2006118
>ref|XM_815137.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509965.130) partial mRNA Length = 504 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 tcttcctgcagccgccgtcg 191 |||||||||||||||||||| Sbjct: 305 tcttcctgcagccgccgtcg 286
>emb|CR668885.2|CNS0FF2Z Tetraodon nigroviridis full-length cDNA Length = 1379 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 caccatggcctgcagctcct 228 |||||||||||||||||||| Sbjct: 273 caccatggcctgcagctcct 254
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 ccacacgctggccaccgaccgcgc 358 |||| ||||||||||||||||||| Sbjct: 3582919 ccacgcgctggccaccgaccgcgc 3582896
>gb|AC138174.9| Mus musculus, clone RP24-198I22, complete sequence Length = 177516 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 atagagttctaagcatttgt 121 |||||||||||||||||||| Sbjct: 52508 atagagttctaagcatttgt 52527
>gb|AC123515.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0033E08, complete sequence Length = 149241 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 256 cctccccgcgcagcagcgtcgccaccgc 283 |||| |||||||||| |||||||||||| Sbjct: 100328 cctcgccgcgcagcaccgtcgccaccgc 100301
>emb|AL096829.17|HSJ595K12 Human DNA sequence from clone RP4-595K12 on chromosome 1p31.2-31.3 Contains the 5' end of a novel gene (MGC34032) and a ribosomal protein L29 (RPL29) pseudogene, complete sequence Length = 135983 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tacacacacataaaaaagac 76 |||||||||||||||||||| Sbjct: 17046 tacacacacataaaaaagac 17027
>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster Length = 89976 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gcagcagcgtcgccaccgcg 284 |||||||||||||||||||| Sbjct: 70471 gcagcagcgtcgccaccgcg 70452
>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of glycopeptide antibiotic teicoplanin Length = 89713 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gcagcagcgtcgccaccgcg 284 |||||||||||||||||||| Sbjct: 77094 gcagcagcgtcgccaccgcg 77075
>gb|AC087373.4| Homo sapiens chromosome 11, clone RP11-54J7, complete sequence Length = 200604 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 ttacacacacataaaaaaga 75 |||||||||||||||||||| Sbjct: 192958 ttacacacacataaaaaaga 192939
>gb|AC093156.2| Homo sapiens chromosome 1 clone RP11-87O11, complete sequence Length = 198846 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tacacacacataaaaaagac 76 |||||||||||||||||||| Sbjct: 4800 tacacacacataaaaaagac 4819
>gb|AC027259.8| Homo sapiens, clone RP11-74D11, complete sequence Length = 133807 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ccatagagttctaagcattt 119 |||||||||||||||||||| Sbjct: 46408 ccatagagttctaagcattt 46427
>gb|AC090568.5| Homo sapiens chromosome 8, clone RP11-69I13, complete sequence Length = 166398 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccatagagttctaagcattt 119 |||||||||||||||||||| Sbjct: 7518 ccatagagttctaagcattt 7499
>gb|AC171007.3| Gallus gallus BAC clone CH261-166I11 from chromosome ul, complete sequence Length = 223327 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 tgccctcatccgctccccatcctc 259 ||||||||||| |||||||||||| Sbjct: 9935 tgccctcatcctctccccatcctc 9958
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 256 cctccccgcgcagcagcgtcgccaccgc 283 |||| |||||||||| |||||||||||| Sbjct: 5764771 cctcgccgcgcagcaccgtcgccaccgc 5764744
>dbj|AB113568.1| Actinoplanes sp. A40644 mevalonate pathway genes and BE-40644 biosynthetic genes, complete cds Length = 22478 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tcgaacgccgtgccgaagcc 334 |||||||||||||||||||| Sbjct: 446 tcgaacgccgtgccgaagcc 465
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 ccccgcgcagcagcgtcgccaccg 282 |||||| ||||||||||||||||| Sbjct: 22920 ccccgctcagcagcgtcgccaccg 22943
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 256 cctccccgcgcagcagcgtcgccaccgc 283 |||| |||||||||| |||||||||||| Sbjct: 5831248 cctcgccgcgcagcaccgtcgccaccgc 5831221 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,274,933 Number of Sequences: 3902068 Number of extensions: 3274933 Number of successful extensions: 66985 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66583 Number of HSP's gapped (non-prelim): 399 length of query: 359 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 337 effective length of database: 17,147,199,772 effective search space: 5778606323164 effective search space used: 5778606323164 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)