ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet92b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475176.1| Oryza sativa (japonica cultivar-group), predic... 149 8e-33
2gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 149 8e-33
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 149 8e-33
4dbj|AK104639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 8e-33
5dbj|AK098879.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 8e-33
6dbj|AK060054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 8e-33
7gb|AY107653.1| Zea mays PCO119349 mRNA sequence 135 1e-28
8dbj|AB190187.1| Arthrobacter globiformis cmmA, cmmB genes for 6-... 48 0.023
9emb|AL606470.15| Mouse DNA sequence from clone RP23-293J11 on ch... 44 0.36
10dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.36
11gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, co... 44 0.36
12emb|AL606748.9| Human DNA sequence from clone RP13-43E11 on chro... 42 1.4
13emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 42 1.4
14emb|AJ318463.1|HSA318463 Homo sapiens RPGR gene for retinitis pi... 42 1.4
15gb|AC104042.5| Homo sapiens chromosome 11, clone CTD-2119L1, com... 42 1.4
16dbj|AK076574.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 1.4
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18gb|AC010873.12| Homo sapiens BAC clone RP11-112N16 from 2, compl... 42 1.4
19dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
20dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
21gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cance... 42 1.4
22ref|XM_629929.1| Dictyostelium discoideum hypothetical protein (... 40 5.6
23ref|XM_475829.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
24gb|AC102143.10| Mus musculus chromosome 7, clone RP23-292M1, com... 40 5.6
25gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome ... 40 5.6
26ref|XM_322490.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.6
27ref|XM_952198.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.6
28gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
29gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosom... 40 5.6
30gb|AF545435.1| Homo sapiens thymine-DNA glycosylase (TDG) gene, ... 40 5.6
31emb|AL606522.6| Mouse DNA sequence from clone RP23-19L22 on chro... 40 5.6
32gb|AC021070.24| Homo sapiens 12 BAC RP11-460N10 (Roswell Park Ca... 40 5.6
33gb|AY394844.4| Pseudomonas sp. M18 pyoluteorin biosynthetic and ... 40 5.6
34gb|AC021200.7| Homo sapiens BAC clone RP11-62B4 from 4, complete... 40 5.6
35gb|AC113618.5| Homo sapiens BAC clone RP11-1367O10 from 2, compl... 40 5.6
36gb|AC020594.6| Homo sapiens BAC clone RP11-322P19 from 2, comple... 40 5.6
37gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complet... 40 5.6
38gb|AC078819.24| Homo sapiens 12q BAC RP11-490H24 (Roswell Park C... 40 5.6
39ref|XM_343442.2| PREDICTED: Rattus norvegicus phosphoglucomutase... 40 5.6
40dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
41dbj|BS000219.2| Pan troglodytes chromosome 22 clone:RP43-010L20,... 40 5.6
42emb|Y10575.1|HSY10575 H.sapiens TDG gene, exon 6 & 7 40 5.6
43dbj|AP001700.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.6
44gb|AC151054.2| Mus musculus BAC clone RP23-147K16 from 13, compl... 40 5.6
45emb|AL049875.2|CNS0000O Human chromosome 14 DNA sequence BAC R-1... 40 5.6
46dbj|AP001607.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 5.6 
>ref|XM_475176.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score =  149 bits (75), Expect = 8e-33
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                        
Query: 245  gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304
            |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 1002 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 943

                                                                        
Query: 305  gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364
            |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 942  gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 883

                                                               
Query: 365  gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtc 415
            ||||| |||||||||||||||||||| ||| ||||||||  ||||||||||
Sbjct: 882  gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtc 832
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05,
              complete sequence
          Length = 153368

 Score =  149 bits (75), Expect = 8e-33
 Identities = 147/171 (85%)
 Strand = Plus / Plus

                                                                          
Query: 245    gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304
              |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 143519 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 143578

                                                                          
Query: 305    gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364
              |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 143579 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 143638

                                                                 
Query: 365    gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtc 415
              ||||| |||||||||||||||||||| ||| ||||||||  ||||||||||
Sbjct: 143639 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtc 143689
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  149 bits (75), Expect = 8e-33
 Identities = 147/171 (85%)
 Strand = Plus / Plus

                                                                            
Query: 245      gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304
                |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 18350307 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 18350366

                                                                            
Query: 305      gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364
                |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 18350367 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 18350426

                                                                   
Query: 365      gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtc 415
                ||||| |||||||||||||||||||| ||| ||||||||  ||||||||||
Sbjct: 18350427 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtc 18350477



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 202      gagaagacgaagacgaaccc 221
                ||||||||||||||||||||
Sbjct: 26915273 gagaagacgaagacgaaccc 26915254
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>dbj|AK104639.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E05, full
            insert sequence
          Length = 1254

 Score =  149 bits (75), Expect = 8e-33
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                        
Query: 245  gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304
            |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 1058 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 999

                                                                        
Query: 305  gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364
            |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 998  gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 939

                                                               
Query: 365  gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtc 415
            ||||| |||||||||||||||||||| ||| ||||||||  ||||||||||
Sbjct: 938  gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtc 888
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>dbj|AK098879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F11, full
            insert sequence
          Length = 1254

 Score =  149 bits (75), Expect = 8e-33
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                        
Query: 245  gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304
            |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 1059 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 1000

                                                                        
Query: 305  gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364
            |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 999  gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 940

                                                               
Query: 365  gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtc 415
            ||||| |||||||||||||||||||| ||| ||||||||  ||||||||||
Sbjct: 939  gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtc 889
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>dbj|AK060054.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B07, full
            insert sequence
          Length = 1284

 Score =  149 bits (75), Expect = 8e-33
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                        
Query: 245  gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304
            |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 1058 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 999

                                                                        
Query: 305  gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364
            |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 998  gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 939

                                                               
Query: 365  gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtc 415
            ||||| |||||||||||||||||||| ||| ||||||||  ||||||||||
Sbjct: 938  gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtc 888
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>gb|AY107653.1| Zea mays PCO119349 mRNA sequence
          Length = 587

 Score =  135 bits (68), Expect = 1e-28
 Identities = 131/152 (86%)
 Strand = Plus / Plus

                                                                       
Query: 264 agcgcgtccttgaagtggccgtgcgcgctgccggcgacggcgtcctcgagcttggccccg 323
           ||||||||| || |||| ||||||||  || | |||| | ||||||| ||||||||||||
Sbjct: 267 agcgcgtccctgtagtgtccgtgcgccttggccgcgatgacgtcctccagcttggccccg 326

                                                                       
Query: 324 aactgctcctggtaggccgccctgatgccgtccatgtccacgtccgaccgcgtcaccgcc 383
           |||||||  |||||||| || |||||| ||||||||||   |||||||||||||||||||
Sbjct: 327 aactgctggtggtaggcggctctgatgtcgtccatgtcgtggtccgaccgcgtcaccgcc 386

                                           
Query: 384 acccgcgacagggcctccttgccgtggtggtc 415
           |||| || |||||||||||| |||||||||||
Sbjct: 387 accctcgtcagggcctccttcccgtggtggtc 418
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>dbj|AB190187.1| Arthrobacter globiformis cmmA, cmmB genes for
            6-alpha-maltosyltransferase, hypothetical protein,
            complete and partial cds
          Length = 4467

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 267  gcgtccttgaagtggccgtgcgcg 290
            ||||||||||||||||||||||||
Sbjct: 3512 gcgtccttgaagtggccgtgcgcg 3489
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>emb|AL606470.15| Mouse DNA sequence from clone RP23-293J11 on chromosome 11 Contains a
              Friedreich ataxia protein (Frda) pseudogene, complete
              sequence
          Length = 203970

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 65     cctcagctgcaaatgttacatt 86
              ||||||||||||||||||||||
Sbjct: 122286 cctcagctgcaaatgttacatt 122307
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 367    ccgaccgcgtcaccgccacccgcgac 392
              |||||||||||||| |||||||||||
Sbjct: 651605 ccgaccgcgtcacccccacccgcgac 651580
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>gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, complete sequence
          Length = 164220

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 4     ggaagacaaagatccaaatgtttaat 29
             ||||||||||| ||||||||||||||
Sbjct: 67934 ggaagacaaagttccaaatgtttaat 67909
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>emb|AL606748.9| Human DNA sequence from clone RP13-43E11 on chromosome Xp21.1-21.3
             Contains the 5' end of the SRPX gene for a chromosome X
             sushi-repeat-containing protein, a novel gene, the RPGR
             gene for retinitis pigmentosa GTPase regulator, the 5' end
             of the OTC gene for ornithine carbamoyltransferase and two
             CpG islands, complete sequence
          Length = 141577

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    tccaaatgtttaattttattt 36
             |||||||||||||||||||||
Sbjct: 77775 tccaaatgtttaattttattt 77795
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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 367    ccgaccgcgtcaccgccaccc 387
              |||||||||||||||||||||
Sbjct: 126036 ccgaccgcgtcaccgccaccc 126016
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>emb|AJ318463.1|HSA318463 Homo sapiens RPGR gene for retinitis pigmentosa GTPase regulator, exons
             1-19
          Length = 77581

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tccaaatgtttaattttattt 36
             |||||||||||||||||||||
Sbjct: 43800 tccaaatgtttaattttattt 43780
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>gb|AC104042.5| Homo sapiens chromosome 11, clone CTD-2119L1, complete sequence
          Length = 109477

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    aaatgtttaattttatttgat 39
             |||||||||||||||||||||
Sbjct: 53579 aaatgtttaattttatttgat 53559
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>dbj|AK076574.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4921518K07 product:unclassifiable, full
            insert sequence
          Length = 4711

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 141  atgaagcaggaaaaaagaaaa 161
            |||||||||||||||||||||
Sbjct: 4656 atgaagcaggaaaaaagaaaa 4676
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 390     gacagggcctccttgccgtgg 410
               |||||||||||||||||||||
Sbjct: 5905844 gacagggcctccttgccgtgg 5905824



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 199      gacgagaagacgaagacgaa 218
                ||||||||||||||||||||
Sbjct: 22959886 gacgagaagacgaagacgaa 22959867
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>gb|AC010873.12| Homo sapiens BAC clone RP11-112N16 from 2, complete sequence
          Length = 180602

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 2      atggaagacaaagatccaaatgttt 26
              ||||||||||||||||||| |||||
Sbjct: 175372 atggaagacaaagatccaagtgttt 175396
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>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_A05
          Length = 120823

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 390   gacagggcctccttgccgtgg 410
             |||||||||||||||||||||
Sbjct: 48292 gacagggcctccttgccgtgg 48272
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>dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1559_F09
          Length = 87792

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 390   gacagggcctccttgccgtgg 410
             |||||||||||||||||||||
Sbjct: 80518 gacagggcctccttgccgtgg 80498
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>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195726

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 141    atgaagcaggaaaaaagaaaa 161
              |||||||||||||||||||||
Sbjct: 157931 atgaagcaggaaaaaagaaaa 157911
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>ref|XM_629929.1| Dictyostelium discoideum hypothetical protein (DDB0184067), partial
           mRNA
          Length = 3351

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  aatgtttaattttatttgat 39
           ||||||||||||||||||||
Sbjct: 482 aatgtttaattttatttgat 501
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>ref|XM_475829.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 633

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 202 gagaagacgaagacgaaccc 221
           ||||||||||||||||||||
Sbjct: 25  gagaagacgaagacgaaccc 6
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>gb|AC102143.10| Mus musculus chromosome 7, clone RP23-292M1, complete sequence
          Length = 169980

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 137    ctagatgaagcaggaaaaaagaaa 160
              ||||||||||||| ||||||||||
Sbjct: 139438 ctagatgaagcagaaaaaaagaaa 139415
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>gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome 13, complete sequence
          Length = 252384

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aagcaggaaaaaagaaaaca 163
             ||||||||||||||||||||
Sbjct: 96445 aagcaggaaaaaagaaaaca 96426
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>ref|XM_322490.1| Neurospora crassa OR74A hypothetical protein (NCU00405.1) partial
           mRNA
          Length = 1992

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 cgacggcgtcctcgagcttg 317
           ||||||||||||||||||||
Sbjct: 472 cgacggcgtcctcgagcttg 453
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>ref|XM_952198.1| Neurospora crassa OR74A hypothetical protein (NCU00405.1) partial
           mRNA
          Length = 1992

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 cgacggcgtcctcgagcttg 317
           ||||||||||||||||||||
Sbjct: 472 cgacggcgtcctcgagcttg 453
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>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12,
             complete sequence
          Length = 119909

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   gagaagacgaagacgaaccc 221
             ||||||||||||||||||||
Sbjct: 67705 gagaagacgaagacgaaccc 67686
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>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence
          Length = 228750

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   agcaggaaaaaagaaaacac 164
             ||||||||||||||||||||
Sbjct: 89700 agcaggaaaaaagaaaacac 89681
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>gb|AF545435.1| Homo sapiens thymine-DNA glycosylase (TDG) gene, complete cds
          Length = 25621

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aagcaggaaaaaagaaaaca 163
             ||||||||||||||||||||
Sbjct: 20788 aagcaggaaaaaagaaaaca 20807
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>emb|AL606522.6| Mouse DNA sequence from clone RP23-19L22 on chromosome 11 Contains the
              Actr2 gene for ARP2 actin-related protein 2 homolog
              (yeast), a small nuclear ribonucleoprotein polypeptide G
              (Snrpg) pseudogene, two novel genes, the Rab1 gene for
              RAB1, member RAS oncogene family and three CpG islands,
              complete sequence
          Length = 203071

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aagcaggaaaaaagaaaaca 163
              ||||||||||||||||||||
Sbjct: 196883 aagcaggaaaaaagaaaaca 196902
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>gb|AC021070.24| Homo sapiens 12 BAC RP11-460N10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 162978

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aatggaagacaaagatccaa 20
             ||||||||||||||||||||
Sbjct: 82870 aatggaagacaaagatccaa 82851
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>gb|AY394844.4| Pseudomonas sp. M18 pyoluteorin biosynthetic and ABC transporter gene
             cluster, partial sequence
          Length = 32800

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 304   cgtcctcgagcttggccccgaactgctc 331
             |||||||||||||||||| || ||||||
Sbjct: 16538 cgtcctcgagcttggcccggacctgctc 16511
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>gb|AC021200.7| Homo sapiens BAC clone RP11-62B4 from 4, complete sequence
          Length = 154690

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   gatccaaatgtttaatttta 33
            ||||||||||||||||||||
Sbjct: 4173 gatccaaatgtttaatttta 4154
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>gb|AC113618.5| Homo sapiens BAC clone RP11-1367O10 from 2, complete sequence
          Length = 199917

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      gacaaagatccaaatgttta 27
              ||||||||||||||||||||
Sbjct: 123106 gacaaagatccaaatgttta 123087
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>gb|AC020594.6| Homo sapiens BAC clone RP11-322P19 from 2, complete sequence
          Length = 193410

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    ccaaatgtttaattttattt 36
             ||||||||||||||||||||
Sbjct: 55016 ccaaatgtttaattttattt 55035
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>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 140   gatgaagcaggaaaaaagaaaaca 163
             ||||||||||||||||| ||||||
Sbjct: 21861 gatgaagcaggaaaaaacaaaaca 21838
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>gb|AC078819.24| Homo sapiens 12q BAC RP11-490H24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 172319

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aagcaggaaaaaagaaaaca 163
             ||||||||||||||||||||
Sbjct: 61808 aagcaggaaaaaagaaaaca 61827
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>ref|XM_343442.2| PREDICTED: Rattus norvegicus phosphoglucomutase 3 (predicted)
            (Pgm3_predicted), mRNA
          Length = 2711

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  aagcaggaaaaaagaaaaca 163
            ||||||||||||||||||||
Sbjct: 2467 aagcaggaaaaaagaaaaca 2486
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>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1121_A05
          Length = 172668

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   gacgagaagacgaagacgaa 218
             ||||||||||||||||||||
Sbjct: 35100 gacgagaagacgaagacgaa 35081
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>dbj|BS000219.2| Pan troglodytes chromosome 22 clone:RP43-010L20, map 22, complete
             sequences
          Length = 62227

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aagcaggaaaaaagaaaaca 163
             ||||||||||||||||||||
Sbjct: 42524 aagcaggaaaaaagaaaaca 42543
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>emb|Y10575.1|HSY10575 H.sapiens TDG gene, exon 6 & 7
          Length = 1169

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 aagcaggaaaaaagaaaaca 163
           ||||||||||||||||||||
Sbjct: 583 aagcaggaaaaaagaaaaca 602
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>dbj|AP001700.1| Homo sapiens genomic DNA, chromosome 21q, section 44/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  aagcaggaaaaaagaaaaca 163
            ||||||||||||||||||||
Sbjct: 7985 aagcaggaaaaaagaaaaca 8004
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>gb|AC151054.2| Mus musculus BAC clone RP23-147K16 from 13, complete sequence
          Length = 220038

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aagcaggaaaaaagaaaaca 163
              ||||||||||||||||||||
Sbjct: 213737 aagcaggaaaaaagaaaaca 213756
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>emb|AL049875.2|CNS0000O Human chromosome 14 DNA sequence BAC R-111A21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163118

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     caaatgtttaattttatttg 37
              ||||||||||||||||||||
Sbjct: 119829 caaatgtttaattttatttg 119848
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>dbj|AP001607.1| Homo sapiens genomic DNA, chromosome 21, clone:KB851D4, APP-D21S292
             region, complete sequence
          Length = 137676

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   aagcaggaaaaaagaaaaca 163
             ||||||||||||||||||||
Sbjct: 41305 aagcaggaaaaaagaaaaca 41324


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,392,485
Number of Sequences: 3902068
Number of extensions: 4392485
Number of successful extensions: 101217
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100867
Number of HSP's gapped (non-prelim): 350
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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