ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet92b02 |
|---|---|
| Clone Library Name | barley_pub |
>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2| Length = 306 Score = 32.3 bits (72), Expect = 0.29 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 9/60 (15%) Frame = +3 Query: 123 AGTVGQHTRQPDAVHPIKVHVTRTAGIRRRKGGGPWCPGR---------GTPPRPHCHPR 275 + T G TR P P++ RRR G GPW PGR GT PR PR Sbjct: 212 SATEGALTRTPAPRRPLQ---------RRRPGTGPWRPGRQRGAGTAPPGTQPRQRPSPR 262
>HCBT3_DIACA (O23918) Anthranilate N-benzoyltransferase protein 3 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 3) Length = 445 Score = 32.0 bits (71), Expect = 0.37 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = -2 Query: 372 YDGNDFGWGRAVAVRSGRANKF-DGKMSAFPGQTGDGSVDVEVCL 241 Y DFGWG G +N F DG+ P Q GDGS+ + + L Sbjct: 388 YQAMDFGWGNPTFF--GISNIFYDGQCFLIPSQNGDGSMTLAINL 430
>HCBT2_DIACA (O23917) Anthranilate N-benzoyltransferase protein 2 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 2) Length = 446 Score = 31.6 bits (70), Expect = 0.49 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = -2 Query: 372 YDGNDFGWGRAVAVRSGRANKF-DGKMSAFPGQTGDGSVDVEVCL 241 Y DFGWG G +N F DG+ P Q GDGS+ + + L Sbjct: 389 YQAMDFGWGSPTFF--GISNIFYDGQCFLIPSQNGDGSMTLAINL 431
>Y801_DEIRA (Q9RW68) Putative carotenoid cyclase DR0801| Length = 410 Score = 30.8 bits (68), Expect = 0.84 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Frame = -3 Query: 341 RWPCGVAEQTS--LTARCRRSPVKPGMAVW 258 R+P G A QT+ + AR RR PV PG VW Sbjct: 150 RFPGGAALQTAYGVVARFRRPPVTPGSMVW 179
>TBX37_CAEEL (Q9U2C9) Putative T-box protein 37| Length = 352 Score = 30.8 bits (68), Expect = 0.84 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 153 PDAVHPIKVHVTRTAGIRRRKGGGPWC-PGRGTPPRPHCHPRFDRGTPT 296 PD+++ I +H+ R GI+ + G W G+G P P + RG T Sbjct: 91 PDSLYSIYIHLERVDGIKYKFDAGEWKEAGKGDPILPIQYKEHPRGKRT 139
>HCBT1_DIACA (O24645) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) Length = 445 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = -2 Query: 372 YDGNDFGWGRAVAVRSGRANKF-DGKMSAFPGQTGDGSVDVEVCLAPDTMGR 220 Y DFGWG G +N F DG+ P + GDGS+ + + L + R Sbjct: 388 YQAMDFGWGSPTFF--GISNIFYDGQCFLIPSRDGDGSMTLAINLFSSHLSR 437
>VGLL1_HUMAN (Q99990) Transcription cofactor vestigial-like protein 1 (Vgl-1)| (TONDU protein) Length = 258 Score = 29.6 bits (65), Expect = 1.9 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -3 Query: 254 WRCASPRTPWAASFPTTNSCSSCHMHLDG 168 WR +SP T P TN ++C++H+ G Sbjct: 80 WRYSSPWTKPQPEVPVTNRAANCNLHVPG 108
>NARH_SHIFL (Q83RN5) Respiratory nitrate reductase 1 beta chain (EC 1.7.99.4)| Length = 512 Score = 29.3 bits (64), Expect = 2.4 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +3 Query: 264 CHPRFDRGTPTSCRQTCL 317 C+PR + G PT C +TC+ Sbjct: 247 CYPRIEAGQPTVCSETCV 264
>NARH_ECOLI (P11349) Respiratory nitrate reductase 1 beta chain (EC 1.7.99.4)| (Nitrate reductase A beta subunit) (Quinol-nitrate oxidoreductase beta subunit) Length = 512 Score = 29.3 bits (64), Expect = 2.4 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +3 Query: 264 CHPRFDRGTPTSCRQTCL 317 C+PR + G PT C +TC+ Sbjct: 247 CYPRIEAGQPTVCSETCV 264
>NARY_ECOLI (P19318) Respiratory nitrate reductase 2 beta chain (EC 1.7.99.4)| Length = 514 Score = 29.3 bits (64), Expect = 2.4 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +3 Query: 264 CHPRFDRGTPTSCRQTCL 317 C+PR + G PT C +TC+ Sbjct: 246 CYPRIESGQPTVCSETCV 263
>DDHB_RHOSU (Q8GPG3) Dimethylsulfide dehydrogenase beta subunit| (Dimethylsulfide iron-sulfur subunit) (DMS DH beta subunit) (DMS DH iron-sulfur subunit) Length = 325 Score = 28.9 bits (63), Expect = 3.2 Identities = 8/18 (44%), Positives = 14/18 (77%) Frame = +3 Query: 264 CHPRFDRGTPTSCRQTCL 317 C+PR ++G PT+C + C+ Sbjct: 195 CYPRIEKGLPTACAKQCV 212
>NIR_NEUCR (P38681) Nitrite reductase [NAD(P)H] (EC 1.7.1.4)| Length = 1176 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -3 Query: 239 PRTPWAASFPTTNSCSSCHMHLDGVHRIWLSC 144 P++P +++ P T + SSC + G W+SC Sbjct: 1027 PQSPTSSATPATTASSSCTTNPSGPASPWISC 1058
>Y1289_MYCBO (P64786) Hypothetical protein Mb1289| Length = 268 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -3 Query: 305 TARCRRSPVKPGMAVWTWRCASPRTPWAA 219 T R RSPV+PG W A+P+TP AA Sbjct: 5 TGRAFRSPVEPGSG-WPGDPATPQTPVAA 32
>Y1259_MYCTU (P64785) Hypothetical protein Rv1259/MT1297.1| Length = 268 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -3 Query: 305 TARCRRSPVKPGMAVWTWRCASPRTPWAA 219 T R RSPV+PG W A+P+TP AA Sbjct: 5 TGRAFRSPVEPGSG-WPGDPATPQTPVAA 32
>NARH_BACSU (P42176) Nitrate reductase beta chain (EC 1.7.99.4)| Length = 487 Score = 28.1 bits (61), Expect = 5.4 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +3 Query: 264 CHPRFDRGTPTSCRQTCL 317 C PR + G PT C +TC+ Sbjct: 244 CFPRLEAGLPTICSETCV 261
>LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1821 Score = 27.7 bits (60), Expect = 7.1 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 21/75 (28%) Frame = +3 Query: 171 IKVHVTRTAGIRRRKGGGPWCPGRGTPPR-------PHCHPRFDRG-------------- 287 +++H T TA + P PG G R P HP G Sbjct: 298 VRLHPTATASSQLSSNALP--PGPGLEQRDGTQQAVPLEHPSSPWGLNLTEKIKKIKIVF 355 Query: 288 TPTSCRQTCLLGHSA 332 TPT C+QTC GH A Sbjct: 356 TPTICKQTCARGHCA 370
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 27.7 bits (60), Expect = 7.1 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = -3 Query: 359 TSVGAGRWPCGVAEQTSLTARCRRSP-VKPGMAVWTWRCASPRTPWAASFP 210 T A P AEQT+ R P VKPG A R A+P P A + P Sbjct: 86 TPAPAASAPQAPAEQTARPTDARPGPAVKPGPAPTPARPAAPEAPAAKAAP 136
>DHSB_PORPU (P80477) Succinate dehydrogenase [ubiquinone] iron-sulfur protein| (EC 1.3.5.1) (IP) Length = 239 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 197 CSSCHMHLDGVHRIWLSCMLSYGTSA*DVTWLPL 96 C SC M++DG++ L+C+ T+A +T PL Sbjct: 68 CGSCSMNIDGINT--LACLKPIKTNANIITIYPL 99
>DHSB_CHOCR (P48932) Succinate dehydrogenase [ubiquinone] iron-sulfur protein| (EC 1.3.5.1) (IP) Length = 250 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -3 Query: 197 CSSCHMHLDGVHRIWLSCMLSYGTSA*DVTWLPL 96 C SC M++DG + L+C+ S T + +T PL Sbjct: 78 CGSCSMNIDGTNS--LACLRSLNTKSNFITIYPL 109
>PFA3_DEBHA (Q6BMV2) Palmitoyltransferase PFA3 (EC 2.3.1.-) (Protein fatty| acyltransferase 3) Length = 405 Score = 27.3 bits (59), Expect = 9.2 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = -1 Query: 94 SVWSPDMSHVCNTC 53 SVW PD H C+TC Sbjct: 173 SVWKPDRCHHCSTC 186
>ACRA_ECOLI (P0AE06) Acriflavine resistance protein A precursor| Length = 397 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +1 Query: 25 KSSTYLLRSNMCYTHVTCPATTPIRGSHVTSYALV 129 K++ R N+ YT VT P + I S+VT ALV Sbjct: 161 KAAVETARINLAYTKVTSPISGRIGKSNVTEGALV 195
>ACRA_ECO57 (P0AE07) Acriflavine resistance protein A precursor| Length = 397 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +1 Query: 25 KSSTYLLRSNMCYTHVTCPATTPIRGSHVTSYALV 129 K++ R N+ YT VT P + I S+VT ALV Sbjct: 161 KAAVETARINLAYTKVTSPISGRIGKSNVTEGALV 195
>YMFP_ECOLI (P75981) Hypothetical protein ymfP in lambdoid prophage e14 region| Length = 263 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 111 HILCAGTVGQHTRQPDAVHPIKVHVTRTAGIRRRKGGGPWCPGRGT 248 H++ GTVG D ++PI T TA R+ GP P G+ Sbjct: 131 HLMGTGTVGVMIASSDLINPIPEESTETAA---RQHIGPLAPVAGS 173
>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)| Length = 2813 Score = 27.3 bits (59), Expect = 9.2 Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 15/80 (18%) Frame = +3 Query: 108 CHILCAGTVGQHTRQPDAVHPIKV--------HVTRTAGI----RRRKGGGPWCPGRGTP 251 CH + A QPD+ HP KV H+ RT G+ RR CP + Sbjct: 2150 CHKVLAPATFYAMCQPDSCHPKKVCEAIALYAHLCRTKGVCVDWRRANFCAMSCP--PSL 2207 Query: 252 PRPHCH---PRFDRGTPTSC 302 HC PR G +SC Sbjct: 2208 VYNHCEHGCPRLCEGNTSSC 2227
>CCA_ACIAD (Q6FA38) Multifunctional CCA protein [Includes: CCA-adding enzyme| (EC 2.7.7.25) (EC 2.7.7.21) (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase (EC 3.1.3.-); 2',3'-cycli Length = 413 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%) Frame = +3 Query: 243 GTPPRPHCHPRFDRGTPT--SCRQTCLLGHS 329 G P RP HP D G T S RQ C +S Sbjct: 215 GVPQRPEYHPEIDCGIHTLMSLRQACKSNYS 245 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,518,108 Number of Sequences: 219361 Number of extensions: 1436753 Number of successful extensions: 4444 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4254 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4441 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
