>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P|
          Length = 334

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
 Frame = +1

Query: 151 QEVILHETILQKTRMTK-------KSTNNLCSLT-----RKEWDLTIIITTAKRPEV*TA 294
           QEV    T+L+   +T        K+T  L +LT     +++ +L   +T  K+ E+ T 
Sbjct: 66  QEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKLTVTKKEEIKTV 125

Query: 295 QFIQAALEKTLDL 333
           + + A LEKT+DL
Sbjct: 126 ESLDAVLEKTVDL 138

>SPRL_STAS1 (Q49Z17) Protein sprT-like|
          Length = 152

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 34  FIHKSRYNQRVRASWPRMLLLTVLGRGTKKELKGFG-STIQEVILHETILQKTRMTKK 204
           F HK+ +N+R+R +  R LL +      +K+   FG S I ++I HE       + KK
Sbjct: 25  FKHKAYFNKRLRTTGGRYLLSSHNIEVNEKQFAKFGESAIIDIIKHELCHYHLHLQKK 82

>LEU1_RHILO (Q98HN3) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 558

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 167 CNITSCIVEPKPLSSFLVPLPRTVSKSILGQDA-RTRWLYLLLCMNKDGAIN 15
           CN  + IV PKP +  ++ LP TV  S     A R  W    +C N D   N
Sbjct: 189 CNAVTEIVRPKPDNKLIINLPSTVEMSTPNIYADRIEW----MCRNLDNREN 236

>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 17/113 (15%)
 Frame = -3

Query: 356  LIDLIFVGRSNVFSSAA*IN*AVQTSGLFAVVIIIVRSHSFRVSEHKLFVDFLVMRVFCN 177
            L+ +    + N F   A I+  +Q    F  VI+I      R  E K++V FL      N
Sbjct: 897  LVSIKSSAQENTFFDDALIDELLQQFAHFGEVILI------RFVEDKMWVTFLEGSSALN 950

Query: 176  IVSCN--------ITSCIVEPK---------PLSSFLVPLPRTVSKSILGQDA 69
            ++S N        IT  +  P           L    V LP + S ++LG+DA
Sbjct: 951  VLSLNGKELLNRTITITLKSPDWIKTLEEEMSLEKISVTLPSSTSSTLLGEDA 1003

>SIDT2_HUMAN (Q8NBJ9) SID1 transmembrane family member 2 precursor|
          Length = 832

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = -3

Query: 281 SGLFAVVIIIVRSHSFRVSEHKLFVDFLVMRVFCNIVSCNITS--CIVEPKPLSSFLVPL 108
           SG+F  ++ ++ +   R     L+VD +V+ V  N+++ ++ +   I+ P   +S+L+ +
Sbjct: 662 SGIFRRILHVLYTDCIRQCSGPLYVDRMVLLVMGNVINWSLAAYGLIMRPNDFASYLLAI 721

>SYGB_AQUAE (O67898) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)|
           (Glycine--tRNA ligase beta chain) (GlyRS)
          Length = 664

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
 Frame = +1

Query: 31  LFIHKSRYNQRVRASWPRML------LLTVLGRGTKKELKGFGSTIQEVILHETI---LQ 183
           L I  ++ N++++  + ++L       L       KK+LK     +++V+ H  +    +
Sbjct: 295 LGISNNKPNEKIKEGYEKVLRARLEDALFFYREDLKKDLKSLIPELKKVLFHPKVGSMYE 354

Query: 184 KTRMTKKSTNNLCSLTRKEWD 246
           K    +K    LC L + EW+
Sbjct: 355 KEERMEKIAQKLCPLLKCEWE 375

>RS4_RHOPA (Q6N9G0) 30S ribosomal protein S4 (RRP-S4)|
          Length = 204

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 118 KKELKGFGSTIQEVILHETILQKTRMTKKSTNNLCSLTRKEWDLTI 255
           K++LKG+ + I E   H   ++ TR+   S  NL  L  +  D  +
Sbjct: 54  KQKLKGYYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDAVV 99

>PHK_SCHPO (O74770) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 825

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 40  HKSRYN-QRVRASWPRMLLLTVLGRGTKKELKG 135
           H++R N + ++  WP ++L T  G+G  K L G
Sbjct: 307 HRARVNREEIKPRWPMIILRTPKGKGCPKYLNG 339

>SYNJ1_BOVIN (O18964) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1) (p150)
            (Fragment)
          Length = 1324

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 17/103 (16%)
 Frame = -3

Query: 326  NVFSSAA*IN*AVQTSGLFAVVIIIVRSHSFRVSEHKLFVDFLVMRVFCNIVSCN----- 162
            N F + A I+  +Q    F  VI+I      R  E K++V FL      N+++ N     
Sbjct: 907  NNFFNDALIDELLQQFTNFGEVILI------RFVEDKMWVTFLEGSSALNVLNLNGKELL 960

Query: 161  ---ITSCIVEPK---------PLSSFLVPLPRTVSKSILGQDA 69
               IT  +  P           L    VPLP + S ++LG+DA
Sbjct: 961  GRTITITLKSPDWIKTLEEEMSLEKINVPLPSSTSSTLLGEDA 1003

>ERO1B_HUMAN (Q86YB8) ERO1-like protein beta precursor (EC 1.8.4.-) (ERO1-Lbeta)|
           (Oxidoreductin-1-Lbeta) (Endoplasmic
           oxidoreductin-1-like protein B)
          Length = 467

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = -3

Query: 167 CNITSCIVEPKPLSSFLVPLPRTVSKSILGQDARTRWLYLLLCMNKDGAIN 15
           C+I  C VEP P S   V +    S   L     T+ L +    NK GAIN
Sbjct: 90  CSIKDCHVEPCPESKIPVGIKAGHSNKYLKMANNTKELEVCEQANKLGAIN 140

>CTN3_HUMAN (Q9UI47) Alpha-3 catenin (Alpha T-catenin) (Cadherin-associated|
           protein)
          Length = 895

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = +1

Query: 79  PRMLLLTVLGRGTKKELKGFGSTIQEVILHETILQKTRMTKKSTNNLCSLTRKEWDLTII 258
           P ++L+     G +KE+K + +     I HE     T    +  N  CS++  E  + I+
Sbjct: 395 PLLVLIEAAKNGREKEIKEYAA-----IFHE----HTSRLVEVANLACSMSTNEDGIKIV 445

Query: 259 ITTAKRPEV*TAQFIQAAL 315
              A   E    Q I AAL
Sbjct: 446 KIAANHLETLCPQIINAAL 464

>SIDT2_MOUSE (Q8CIF6) SID1 transmembrane family member 2 precursor|
          Length = 832

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -3

Query: 281 SGLFAVVIIIVRSHSFRVSEHKLFVDFLVMRVFCNIVSCNITS--CIVEPKPLSSFLVPL 108
           SG+F  ++ ++ +   R     L+ D +V+ V  NI++ ++ +   I+ P   +S+L+ +
Sbjct: 662 SGIFRRILHVLYTDCIRQCSGPLYTDRMVLLVMGNIINWSLAAYGLIMRPNDFASYLLAI 721

>RS4_NITWN (Q3ST14) 30S ribosomal protein S4|
          Length = 205

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 118 KKELKGFGSTIQEVILHETILQKTRMTKKSTNNLCSLTRKEWDLTI 255
           K++LKG+   I E   +   ++ TRM   S  NL  L  +  D  +
Sbjct: 55  KQKLKGYYGNISERQFYAIYVEATRMKGDSGENLIGLLERRLDTVV 100

>KSGA_BORPE (Q7VU11) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 265

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 154 EVILHETILQKTRMTKKSTNNLCSLTRKEWDLTIIITTAKRPEV*TAQFIQAA 312
           E ++     Q+ +M ++  ++  +LT   WD   I  TA+  EV  AQFI  A
Sbjct: 201 ETVVARAFSQRRKMLRRVLDDWAALT--PWDELGIAPTARAEEVGVAQFIGLA 251

>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1575

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 17/103 (16%)
 Frame = -3

Query: 326  NVFSSAA*IN*AVQTSGLFAVVIIIVRSHSFRVSEHKLFVDFLVMRVFCNIVSCN----- 162
            N F   A I+  +Q    F  VI+I      R  E K++V FL      N++S N     
Sbjct: 907  NNFFDDALIDELLQQFASFGEVILI------RFVEDKMWVTFLEGSSALNVLSLNGKELL 960

Query: 161  ---ITSCIVEPK---------PLSSFLVPLPRTVSKSILGQDA 69
               IT  +  P           L    + LP + S ++LG+DA
Sbjct: 961  NRTITIALKSPDWIKNLEEEMSLEKISIALPSSTSSTLLGEDA 1003


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,482,523
Number of Sequences: 219361
Number of extensions: 879796
Number of successful extensions: 2000
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2000
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)