ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet91d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete ... 585 e-164
2emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clo... 569 e-159
3emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clo... 496 e-137
4gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete ... 488 e-135
5emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clo... 436 e-119
6emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clo... 428 e-117
7gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, comple... 412 e-112
8emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clo... 385 e-104
9gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete ... 375 e-101
10gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, comple... 349 3e-93
11emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin 218 8e-54
12dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds 80 5e-12
13dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds 70 5e-09
14gb|AC149153.3| Xenopus tropicalis clone ISB-221D20, complete seq... 42 1.0
15gb|AC122496.2| Mus musculus BAC clone RP24-400K16 from 5, comple... 42 1.0
16emb|BX248402.13| Zebrafish DNA sequence from clone CH211-226P14 ... 42 1.0
17emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, c... 42 1.0
18dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
19dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
20gb|DQ186202.1| Thalassiosira pseudonana mitochondrion, complete ... 40 4.1
21gb|AC101677.8| Mus musculus chromosome 10, clone RP23-138N1, com... 40 4.1
22emb|CR931735.1| Medicago truncatula chromosome 5 clone mth2-37f4... 40 4.1
23gb|AC146572.11| Medicago truncatula clone mth2-104c10, complete ... 40 4.1
24gb|AC022395.4| Homo sapiens chromosome 10 clone RP11-354M20, com... 40 4.1
25gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3... 40 4.1
26gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Canc... 40 4.1
27gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cance... 40 4.1
28gb|AC084654.1|CBRG45O23 Caenorhabditis briggsae cosmid G45O23, c... 40 4.1
29gb|AY128102.1| Lycopersicon esculentum isolate vis1-lta small he... 40 4.1
30gb|AY128101.1| Lycopersicon esculentum isolate vis1-hta small he... 40 4.1
31gb|AC008498.3|AC008498 Homo sapiens chromosome 5 clone CTC-436P1... 40 4.1
32gb|AC155325.5| Mus musculus 10 BAC RP24-86C24 (Roswell Park Canc... 40 4.1
33gb|AC005879.3|AC005879 citb_287_c_20, complete sequence 40 4.1
34gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complet... 40 4.1
35gb|AY487430.1| Uncultured organism clone 2A15 nitrilase (BD5338)... 40 4.1
36gb|AC068314.6| Homo sapiens chromosome 3 clone RP11-194D21 map 3... 40 4.1

>gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete cds, clone pKG1940
          Length = 663

 Score =  585 bits (295), Expect = e-164
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   cataatatatccatggaacttttatattaagccaagggtataaatagattcatcgtggta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 658 cataatatatccatggaacttttatattaagccaagggtataaatagattcatcgtgggt 599

                                                                       
Query: 65  actcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcg 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcg 539

                                                                       
Query: 125 atctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaa 479

                                                                       
Query: 185 atcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattaca 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 478 atcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattaca 419

                                                                       
Query: 245 gaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggga 359

                      
Query: 305 aacattgtcca 315
           |||||||||||
Sbjct: 358 aacattgtcca 348



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>emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clone DD3)
          Length = 491

 Score =  569 bits (287), Expect = e-159
 Identities = 299/303 (98%)
 Strand = Plus / Minus

                                                                       
Query: 13  atccatggaacttttatattaagccaagggtataaatagattcatcgtggtaactcttat 72
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 491 atccatggaacttttatattaagccaagggcataaatagattcatcgtggtgactcttat 432

                                                                       
Query: 73  tggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcgatctggtg 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcgatctggtg 372

                                                                       
Query: 133 atggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgcc 192
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 371 atggtatcaagattgttgaacagaaaatgaaaaaacgaccttggccatagaaatcatgcc 312

                                                                       
Query: 193 caagaaggcatgattaggcttcaacagactgaatgacatcaccatcattacagaaacggg 252
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 311 caagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacggg 252

                                                                       
Query: 253 cacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaaacattgt 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaaacattgt 192

              
Query: 313 cca 315
           |||
Sbjct: 191 cca 189



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>emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clone DG3)
          Length = 544

 Score =  496 bits (250), Expect = e-137
 Identities = 265/270 (98%)
 Strand = Plus / Minus

                                                                       
Query: 46  aaatagattcatcgtggtaactcttattggaacgagggaaaaaacagaaatacataacta 105
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaatagattcatcgtggcgactcttattggaacgagggaaaaaacagaaatacataacta 485

                                                                       
Query: 106 agatgatacatttgcttcgatctggtgatggtatcaagattgttgaacagaaaatgacaa 165
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agatgatacatttgcttcgatgtggtgatggtatcaagattgttgaacagaaaatgacaa 425

                                                                       
Query: 166 aacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactgaa 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 424 aacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaagagactgaa 365

                                                                       
Query: 226 tgacatcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatt 285
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgacttcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatt 305

                                         
Query: 286 tcatctcttggccacgggaaacattgtcca 315
           ||||||||||||||||||||||||||||||
Sbjct: 304 tcatctcttggccacgggaaacattgtcca 275



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>gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete cds, clone pKG1348
          Length = 608

 Score =  488 bits (246), Expect = e-135
 Identities = 249/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 66  ctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcga 538

                                                                       
Query: 126 tctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaa 478

                                                                       
Query: 186 tcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattacag 245
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 477 tcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacag 418

                                                                       
Query: 246 aaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaa 358

                     
Query: 306 acattgtcca 315
           ||||||||||
Sbjct: 357 acattgtcca 348



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>emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clone DC4)
          Length = 658

 Score =  436 bits (220), Expect = e-119
 Identities = 294/316 (93%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcacataatatatccatggaacttttatattaagccaagggtataaatagattcatcgt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 644 atcacataatatatccatggaacttttatattaagccaagggtacaaatagattcatcgt 585

                                                                       
Query: 61  ggtaactcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgc 120
           ||  || ||||||||||| ||||||||| ||||||| ||||| ||||||||||||||| |
Sbjct: 584 ggcgacccttattggaacaagggaaaaa-cagaaatgcataagtaagatgatacatttcc 526

                                                                       
Query: 121 ttcgat-ctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggcca 179
           |||||| | | |||||||||||||||| || || | |||||||||| |||||||||||||
Sbjct: 525 ttcgatacagctgatggtatcaagattattcaagacaaaatgacaatacgaccttggcca 466

                                                                       
Query: 180 tagaaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatca 239
           |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 465 tagaaatcatgcacaagaaggcatgattaggcttcaacagactgaatgactgcaccatca 406

                                                                       
Query: 240 ttacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 299
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttacaaaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 346

                           
Query: 300 cgggaaacattgtcca 315
           ||| ||||||||||||
Sbjct: 345 cggaaaacattgtcca 330



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>emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clone DB4)
          Length = 637

 Score =  428 bits (216), Expect = e-117
 Identities = 293/316 (92%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcacataatatatccatggaacttttatattaagccaagggtataaatagattcatcgt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 637 atcacataatatatccatggaacttttatattaagccaagggtacaaatagattcatcgt 578

                                                                       
Query: 61  ggtaactcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgc 120
           ||  |||||||||||||| |||||||||  | |||||||||| |||||||||||||| ||
Sbjct: 577 ggcgactcttattggaacaagggaaaaag-acaaatacataagtaagatgatacattggc 519

                                                                       
Query: 121 ttcgat-ctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggcca 179
           ||| || | | |||||||||||||||| || || | |||||||||| |||||| ||||||
Sbjct: 518 ttccatacagctgatggtatcaagattattcaagacaaaatgacaatacgaccatggcca 459

                                                                       
Query: 180 tagaaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatca 239
           |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 458 tagaaatcatgcacaagaaggcatgattaggcttcaacagactgaatgactgcaccatca 399

                                                                       
Query: 240 ttacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 339

                           
Query: 300 cgggaaacattgtcca 315
           ||| ||||||||||||
Sbjct: 338 cggaaaacattgtcca 323



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>gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, complete cds
          Length = 2406

 Score =  412 bits (208), Expect = e-112
 Identities = 285/308 (92%), Gaps = 2/308 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    atcacataatatatccatggaacttttatattaagccaagggtataaatagattcatcgt 60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2337 atcacataatatatccatggaacttttatattaagccaagggtacaaatagattcatcgt 2278

                                                                        
Query: 61   ggtaactcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgc 120
            ||  |||||| ||||||| |||||||||  | |||||||||| |||||||||||||| ||
Sbjct: 2277 ggcgactcttgttggaacaagggaaaaag-acaaatacataagtaagatgatacattggc 2219

                                                                        
Query: 121  ttcgat-ctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggcca 179
            ||| || | | |||||||||||||||| || || | |||||||||| |||||||||||||
Sbjct: 2218 ttccatacagctgatggtatcaagattattcaagacaaaatgacaatacgaccttggcca 2159

                                                                        
Query: 180  tagaaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatca 239
            |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 2158 tagaaatcatgcacaagaaggcatgattaggcttcaacagactgaatgactgcaccatca 2099

                                                                        
Query: 240  ttacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2098 ttacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 2039

                    
Query: 300  cgggaaac 307
            ||| ||||
Sbjct: 2038 cggaaaac 2031



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>emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clone DF2)
          Length = 453

 Score =  385 bits (194), Expect = e-104
 Identities = 281/306 (91%), Gaps = 3/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  atatccatggaacttttatattaagccaagggtataaatagattcatcgtggtaactctt 70
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||  || |||
Sbjct: 453 atatccatggaacttt-atattaagccaagggtacaaatagattcatcgtggcgaccctt 395

                                                                       
Query: 71  attggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcgat-ctg 129
           |||||||| ||||||||| ||||||| ||||| ||||||||||||||| ||||||| | |
Sbjct: 394 attggaacaagggaaaaa-cagaaatgcataagtaagatgatacatttccttcgatacag 336

                                                                       
Query: 130 gtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcat 189
            |||||||||||||||| || || | |||||||||| |||||||||||||||||||||||
Sbjct: 335 ctgatggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcat 276

                                                                       
Query: 190 gcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattacagaaac 249
           || |||||||||||||||||| ||||||||||||||||||  ||||||||||||| ||||
Sbjct: 275 gcacaagaaggcatgattaggattcaacagactgaatgactgcaccatcattacaaaaac 216

                                                                       
Query: 250 gggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaaacat 309
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 215 gggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccatggaaaacat 156

                 
Query: 310 tgtcca 315
           ||||||
Sbjct: 155 tgtcca 150



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>gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete cds, clone pKG2872
          Length = 540

 Score =  375 bits (189), Expect = e-101
 Identities = 192/193 (99%)
 Strand = Plus / Minus

                                                                       
Query: 123 cgatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cgatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatag 481

                                                                       
Query: 183 aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcatta 242
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 480 aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcatta 421

                                                                       
Query: 243 cagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgg 361

                        
Query: 303 gaaacattgtcca 315
           |||||||||||||
Sbjct: 360 gaaacattgtcca 348



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>gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, complete cds
          Length = 2259

 Score =  349 bits (176), Expect = 3e-93
 Identities = 182/184 (98%)
 Strand = Plus / Minus

                                                                        
Query: 124  gatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccataga 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 gatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccataga 2178

                                                                        
Query: 184  aatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattac 243
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2177 aatcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 2118

                                                                        
Query: 244  agaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggg 303
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2117 agaaacgggcacatgcgttgctgcagagtcccatgtcaaatttcatctcttggccacggg 2058

                
Query: 304  aaac 307
            ||||
Sbjct: 2057 aaac 2054



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>emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin
          Length = 414

 Score =  218 bits (110), Expect = 8e-54
 Identities = 110/110 (100%)
 Strand = Plus / Minus

                                                                       
Query: 206 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcacatgcgttgct 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcacatgcgttgct 355

                                                             
Query: 266 gcagagtcccatgtcgaatttcatctcttggccacgggaaacattgtcca 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gcagagtcccatgtcgaatttcatctcttggccacgggaaacattgtcca 305



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>dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds
          Length = 678

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 118/144 (81%)
 Strand = Plus / Minus

                                                                       
Query: 158 aatgacaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaac 217
           |||| |||||||||| ||||||||||||| | || | |||  ||||||||||||  | ||
Sbjct: 558 aatggcaaaacgaccatggccatagaaataaggcacgagagtgcatgattaggccccgac 499

                                                                       
Query: 218 agactgaatgacatcaccatcattacagaaacgggcacatgcgttgctgcagagtcccat 277
           |||  || ||||  |||| |  |||||||||||| ||||||||||| |||||| |  |||
Sbjct: 498 agatggattgacggcacccttgttacagaaacggacacatgcgttgttgcagacttgcat 439

                                   
Query: 278 gtcgaatttcatctcttggccacg 301
           |||||  |||||||||||||||||
Sbjct: 438 gtcgatgttcatctcttggccacg 415



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 51  gattcatcgtggtaactcttattggaacgagggaaaa 87
           ||||||||||| ||||||||||| ||| || ||||||
Sbjct: 671 gattcatcgtgataactcttatttgaatgatggaaaa 635



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>dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds
          Length = 641

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 119/147 (80%)
 Strand = Plus / Minus

                                                                       
Query: 169 gaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactgaatga 228
           ||||| ||||| ||||||||||| |||||  ||||||||| ||||  | |||  ||||||
Sbjct: 496 gacctcggccaaagaaatcatgcacaagagtgcatgattaagcttggaaagatggaatga 437

                                                                       
Query: 229 catcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttca 288
           |  |||| |  |||||||||||  ||||| | ||| ||||||||  |||||||| |||||
Sbjct: 436 cggcacccttgttacagaaacgaacacattctttgttgcagagtagcatgtcgattttca 377

                                      
Query: 289 tctcttggccacgggaaacattgtcca 315
           ||||||||||| |   |||||||||||
Sbjct: 376 tctcttggccatgaataacattgtcca 350



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>gb|AC149153.3| Xenopus tropicalis clone ISB-221D20, complete sequence
          Length = 58609

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 84   aaaaaacagaaatacataact 104
            |||||||||||||||||||||
Sbjct: 8230 aaaaaacagaaatacataact 8210



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>gb|AC122496.2| Mus musculus BAC clone RP24-400K16 from 5, complete sequence
          Length = 180081

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      tcacataatatatccatggaa 22
              |||||||||||||||||||||
Sbjct: 155539 tcacataatatatccatggaa 155559



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>emb|BX248402.13| Zebrafish DNA sequence from clone CH211-226P14 in linkage group 14,
             complete sequence
          Length = 137130

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 225   atgacatcaccatcattacagaaac 249
             |||||||||||||||||||| ||||
Sbjct: 27486 atgacatcaccatcattacataaac 27462



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>emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, complete sequence
          Length = 201461

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 225    atgacatcaccatcattacagaaac 249
              |||||||||||||||||||| ||||
Sbjct: 188699 atgacatcaccatcattacataaac 188723



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 140     caagattgttgaacagaaaat 160
               |||||||||||||||||||||
Sbjct: 6740764 caagattgttgaacagaaaat 6740784



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>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1131G07
          Length = 133992

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 140   caagattgttgaacagaaaat 160
             |||||||||||||||||||||
Sbjct: 61817 caagattgttgaacagaaaat 61837



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>gb|DQ186202.1| Thalassiosira pseudonana mitochondrion, complete genome
          Length = 43827

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tatccatggaacttttatat 31
             ||||||||||||||||||||
Sbjct: 19085 tatccatggaacttttatat 19104



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>gb|AC101677.8| Mus musculus chromosome 10, clone RP23-138N1, complete sequence
          Length = 206087

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   atgacatcaccatcattaca 244
             ||||||||||||||||||||
Sbjct: 32100 atgacatcaccatcattaca 32119



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>emb|CR931735.1| Medicago truncatula chromosome 5 clone mth2-37f4, COMPLETE SEQUENCE
          Length = 114414

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    aaatacataactaagatgat 112
             ||||||||||||||||||||
Sbjct: 70952 aaatacataactaagatgat 70971



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>gb|AC146572.11| Medicago truncatula clone mth2-104c10, complete sequence
          Length = 109548

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  aaatacataactaagatgat 112
           ||||||||||||||||||||
Sbjct: 645 aaatacataactaagatgat 664



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>gb|AC022395.4| Homo sapiens chromosome 10 clone RP11-354M20, complete sequence
          Length = 193669

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   aactaagatgatacatttgc 120
             ||||||||||||||||||||
Sbjct: 96493 aactaagatgatacatttgc 96512



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>gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3p, complete sequence
          Length = 177721

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    aagattgttgaacagaaaat 160
              ||||||||||||||||||||
Sbjct: 113658 aagattgttgaacagaaaat 113677



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>gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206425

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   atgacatcaccatcattaca 244
             ||||||||||||||||||||
Sbjct: 52069 atgacatcaccatcattaca 52050



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>gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 116556

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   cagactgaatgacatcacca 236
             ||||||||||||||||||||
Sbjct: 64821 cagactgaatgacatcacca 64802



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>gb|AC084654.1|CBRG45O23 Caenorhabditis briggsae cosmid G45O23, complete sequence
          Length = 34686

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    acagaaatacataactaaga 108
             ||||||||||||||||||||
Sbjct: 19747 acagaaatacataactaaga 19766



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>gb|AY128102.1| Lycopersicon esculentum isolate vis1-lta small heat shock protein
            (vis1) gene, complete cds
          Length = 2257

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 65   actcttattggaacgagggaaaaa 88
            |||||||||||||||| |||||||
Sbjct: 1736 actcttattggaacgaaggaaaaa 1713



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>gb|AY128101.1| Lycopersicon esculentum isolate vis1-hta small heat shock protein
            (vis1) gene, complete cds
          Length = 2224

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 65   actcttattggaacgagggaaaaa 88
            |||||||||||||||| |||||||
Sbjct: 1703 actcttattggaacgaaggaaaaa 1680



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>gb|AC008498.3|AC008498 Homo sapiens chromosome 5 clone CTC-436P18, complete sequence
          Length = 217898

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     aaaaaacagaaatacataac 103
              ||||||||||||||||||||
Sbjct: 161134 aaaaaacagaaatacataac 161153



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>gb|AC155325.5| Mus musculus 10 BAC RP24-86C24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 171402

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   atgacatcaccatcattaca 244
             ||||||||||||||||||||
Sbjct: 34723 atgacatcaccatcattaca 34704



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>gb|AC005879.3|AC005879 citb_287_c_20, complete sequence
          Length = 190982

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aactaagatgatacatttgc 120
             ||||||||||||||||||||
Sbjct: 32396 aactaagatgatacatttgc 32377



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>gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complete sequence
          Length = 227073

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     aaaaaacagaaatacataac 103
              ||||||||||||||||||||
Sbjct: 101064 aaaaaacagaaatacataac 101083



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>gb|AY487430.1| Uncultured organism clone 2A15 nitrilase (BD5338) gene, complete
           cds
          Length = 1047

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 171 ccttggccatagaaatcatgccca 194
           |||||||||| |||||||||||||
Sbjct: 862 ccttggccattgaaatcatgccca 839



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>gb|AC068314.6| Homo sapiens chromosome 3 clone RP11-194D21 map 3p, complete sequence
          Length = 179814

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  aagattgttgaacagaaaat 160
            ||||||||||||||||||||
Sbjct: 3697 aagattgttgaacagaaaat 3716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,279,836
Number of Sequences: 3902068
Number of extensions: 3279836
Number of successful extensions: 66243
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66154
Number of HSP's gapped (non-prelim): 79
length of query: 315
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 293
effective length of database: 17,147,199,772
effective search space: 5024129533196
effective search space used: 5024129533196
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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