| Clone Name | rbaet91d12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete cds, clone pKG1940 Length = 663 Score = 585 bits (295), Expect = e-164 Identities = 307/311 (98%) Strand = Plus / Minus Query: 5 cataatatatccatggaacttttatattaagccaagggtataaatagattcatcgtggta 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 658 cataatatatccatggaacttttatattaagccaagggtataaatagattcatcgtgggt 599 Query: 65 actcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcg 124 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 598 tctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcg 539 Query: 125 atctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaa 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 538 atctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaa 479 Query: 185 atcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattaca 244 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 478 atcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattaca 419 Query: 245 gaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggga 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 gaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggga 359 Query: 305 aacattgtcca 315 ||||||||||| Sbjct: 358 aacattgtcca 348
>emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clone DD3) Length = 491 Score = 569 bits (287), Expect = e-159 Identities = 299/303 (98%) Strand = Plus / Minus Query: 13 atccatggaacttttatattaagccaagggtataaatagattcatcgtggtaactcttat 72 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 491 atccatggaacttttatattaagccaagggcataaatagattcatcgtggtgactcttat 432 Query: 73 tggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcgatctggtg 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 431 tggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcgatctggtg 372 Query: 133 atggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgcc 192 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 371 atggtatcaagattgttgaacagaaaatgaaaaaacgaccttggccatagaaatcatgcc 312 Query: 193 caagaaggcatgattaggcttcaacagactgaatgacatcaccatcattacagaaacggg 252 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 311 caagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacggg 252 Query: 253 cacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaaacattgt 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 cacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaaacattgt 192 Query: 313 cca 315 ||| Sbjct: 191 cca 189
>emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clone DG3) Length = 544 Score = 496 bits (250), Expect = e-137 Identities = 265/270 (98%) Strand = Plus / Minus Query: 46 aaatagattcatcgtggtaactcttattggaacgagggaaaaaacagaaatacataacta 105 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 544 aaatagattcatcgtggcgactcttattggaacgagggaaaaaacagaaatacataacta 485 Query: 106 agatgatacatttgcttcgatctggtgatggtatcaagattgttgaacagaaaatgacaa 165 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 484 agatgatacatttgcttcgatgtggtgatggtatcaagattgttgaacagaaaatgacaa 425 Query: 166 aacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactgaa 225 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 424 aacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaagagactgaa 365 Query: 226 tgacatcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatt 285 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 364 tgacttcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatt 305 Query: 286 tcatctcttggccacgggaaacattgtcca 315 |||||||||||||||||||||||||||||| Sbjct: 304 tcatctcttggccacgggaaacattgtcca 275
>gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete cds, clone pKG1348 Length = 608 Score = 488 bits (246), Expect = e-135 Identities = 249/250 (99%) Strand = Plus / Minus Query: 66 ctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcga 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 597 ctcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcga 538 Query: 126 tctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaa 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 537 tctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaa 478 Query: 186 tcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattacag 245 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 477 tcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacag 418 Query: 246 aaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaa 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 417 aaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaa 358 Query: 306 acattgtcca 315 |||||||||| Sbjct: 357 acattgtcca 348
>emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clone DC4) Length = 658 Score = 436 bits (220), Expect = e-119 Identities = 294/316 (93%), Gaps = 2/316 (0%) Strand = Plus / Minus Query: 1 atcacataatatatccatggaacttttatattaagccaagggtataaatagattcatcgt 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 644 atcacataatatatccatggaacttttatattaagccaagggtacaaatagattcatcgt 585 Query: 61 ggtaactcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgc 120 || || ||||||||||| ||||||||| ||||||| ||||| ||||||||||||||| | Sbjct: 584 ggcgacccttattggaacaagggaaaaa-cagaaatgcataagtaagatgatacatttcc 526 Query: 121 ttcgat-ctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggcca 179 |||||| | | |||||||||||||||| || || | |||||||||| ||||||||||||| Sbjct: 525 ttcgatacagctgatggtatcaagattattcaagacaaaatgacaatacgaccttggcca 466 Query: 180 tagaaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatca 239 |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 465 tagaaatcatgcacaagaaggcatgattaggcttcaacagactgaatgactgcaccatca 406 Query: 240 ttacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 299 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 405 ttacaaaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 346 Query: 300 cgggaaacattgtcca 315 ||| |||||||||||| Sbjct: 345 cggaaaacattgtcca 330
>emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clone DB4) Length = 637 Score = 428 bits (216), Expect = e-117 Identities = 293/316 (92%), Gaps = 2/316 (0%) Strand = Plus / Minus Query: 1 atcacataatatatccatggaacttttatattaagccaagggtataaatagattcatcgt 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 637 atcacataatatatccatggaacttttatattaagccaagggtacaaatagattcatcgt 578 Query: 61 ggtaactcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgc 120 || |||||||||||||| ||||||||| | |||||||||| |||||||||||||| || Sbjct: 577 ggcgactcttattggaacaagggaaaaag-acaaatacataagtaagatgatacattggc 519 Query: 121 ttcgat-ctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggcca 179 ||| || | | |||||||||||||||| || || | |||||||||| |||||| |||||| Sbjct: 518 ttccatacagctgatggtatcaagattattcaagacaaaatgacaatacgaccatggcca 459 Query: 180 tagaaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatca 239 |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 458 tagaaatcatgcacaagaaggcatgattaggcttcaacagactgaatgactgcaccatca 399 Query: 240 ttacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 398 ttacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 339 Query: 300 cgggaaacattgtcca 315 ||| |||||||||||| Sbjct: 338 cggaaaacattgtcca 323
>gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, complete cds Length = 2406 Score = 412 bits (208), Expect = e-112 Identities = 285/308 (92%), Gaps = 2/308 (0%) Strand = Plus / Minus Query: 1 atcacataatatatccatggaacttttatattaagccaagggtataaatagattcatcgt 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2337 atcacataatatatccatggaacttttatattaagccaagggtacaaatagattcatcgt 2278 Query: 61 ggtaactcttattggaacgagggaaaaaacagaaatacataactaagatgatacatttgc 120 || |||||| ||||||| ||||||||| | |||||||||| |||||||||||||| || Sbjct: 2277 ggcgactcttgttggaacaagggaaaaag-acaaatacataagtaagatgatacattggc 2219 Query: 121 ttcgat-ctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggcca 179 ||| || | | |||||||||||||||| || || | |||||||||| ||||||||||||| Sbjct: 2218 ttccatacagctgatggtatcaagattattcaagacaaaatgacaatacgaccttggcca 2159 Query: 180 tagaaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatca 239 |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2158 tagaaatcatgcacaagaaggcatgattaggcttcaacagactgaatgactgcaccatca 2099 Query: 240 ttacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2098 ttacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggcca 2039 Query: 300 cgggaaac 307 ||| |||| Sbjct: 2038 cggaaaac 2031
>emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clone DF2) Length = 453 Score = 385 bits (194), Expect = e-104 Identities = 281/306 (91%), Gaps = 3/306 (0%) Strand = Plus / Minus Query: 11 atatccatggaacttttatattaagccaagggtataaatagattcatcgtggtaactctt 70 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||| Sbjct: 453 atatccatggaacttt-atattaagccaagggtacaaatagattcatcgtggcgaccctt 395 Query: 71 attggaacgagggaaaaaacagaaatacataactaagatgatacatttgcttcgat-ctg 129 |||||||| ||||||||| ||||||| ||||| ||||||||||||||| ||||||| | | Sbjct: 394 attggaacaagggaaaaa-cagaaatgcataagtaagatgatacatttccttcgatacag 336 Query: 130 gtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcat 189 |||||||||||||||| || || | |||||||||| ||||||||||||||||||||||| Sbjct: 335 ctgatggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcat 276 Query: 190 gcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattacagaaac 249 || |||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| Sbjct: 275 gcacaagaaggcatgattaggattcaacagactgaatgactgcaccatcattacaaaaac 216 Query: 250 gggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgggaaacat 309 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 215 gggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccatggaaaacat 156 Query: 310 tgtcca 315 |||||| Sbjct: 155 tgtcca 150
>gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete cds, clone pKG2872 Length = 540 Score = 375 bits (189), Expect = e-101 Identities = 192/193 (99%) Strand = Plus / Minus Query: 123 cgatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatag 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 cgatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatag 481 Query: 183 aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcatta 242 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 480 aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcatta 421 Query: 243 cagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgg 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 cagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgg 361 Query: 303 gaaacattgtcca 315 ||||||||||||| Sbjct: 360 gaaacattgtcca 348
>gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, complete cds Length = 2259 Score = 349 bits (176), Expect = 3e-93 Identities = 182/184 (98%) Strand = Plus / Minus Query: 124 gatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccataga 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2237 gatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccataga 2178 Query: 184 aatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattac 243 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 2177 aatcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 2118 Query: 244 agaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacggg 303 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2117 agaaacgggcacatgcgttgctgcagagtcccatgtcaaatttcatctcttggccacggg 2058 Query: 304 aaac 307 |||| Sbjct: 2057 aaac 2054
>emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin Length = 414 Score = 218 bits (110), Expect = 8e-54 Identities = 110/110 (100%) Strand = Plus / Minus Query: 206 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcacatgcgttgct 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 414 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcacatgcgttgct 355 Query: 266 gcagagtcccatgtcgaatttcatctcttggccacgggaaacattgtcca 315 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 354 gcagagtcccatgtcgaatttcatctcttggccacgggaaacattgtcca 305
>dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds Length = 678 Score = 79.8 bits (40), Expect = 5e-12 Identities = 118/144 (81%) Strand = Plus / Minus Query: 158 aatgacaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaac 217 |||| |||||||||| ||||||||||||| | || | ||| |||||||||||| | || Sbjct: 558 aatggcaaaacgaccatggccatagaaataaggcacgagagtgcatgattaggccccgac 499 Query: 218 agactgaatgacatcaccatcattacagaaacgggcacatgcgttgctgcagagtcccat 277 ||| || |||| |||| | |||||||||||| ||||||||||| |||||| | ||| Sbjct: 498 agatggattgacggcacccttgttacagaaacggacacatgcgttgttgcagacttgcat 439 Query: 278 gtcgaatttcatctcttggccacg 301 ||||| ||||||||||||||||| Sbjct: 438 gtcgatgttcatctcttggccacg 415 Score = 42.1 bits (21), Expect = 1.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 51 gattcatcgtggtaactcttattggaacgagggaaaa 87 ||||||||||| ||||||||||| ||| || |||||| Sbjct: 671 gattcatcgtgataactcttatttgaatgatggaaaa 635
>dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds Length = 641 Score = 69.9 bits (35), Expect = 5e-09 Identities = 119/147 (80%) Strand = Plus / Minus Query: 169 gaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactgaatga 228 ||||| ||||| ||||||||||| ||||| ||||||||| |||| | ||| |||||| Sbjct: 496 gacctcggccaaagaaatcatgcacaagagtgcatgattaagcttggaaagatggaatga 437 Query: 229 catcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttca 288 | |||| | ||||||||||| ||||| | ||| |||||||| |||||||| ||||| Sbjct: 436 cggcacccttgttacagaaacgaacacattctttgttgcagagtagcatgtcgattttca 377 Query: 289 tctcttggccacgggaaacattgtcca 315 ||||||||||| | ||||||||||| Sbjct: 376 tctcttggccatgaataacattgtcca 350
>gb|AC149153.3| Xenopus tropicalis clone ISB-221D20, complete sequence Length = 58609 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 aaaaaacagaaatacataact 104 ||||||||||||||||||||| Sbjct: 8230 aaaaaacagaaatacataact 8210
>gb|AC122496.2| Mus musculus BAC clone RP24-400K16 from 5, complete sequence Length = 180081 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 tcacataatatatccatggaa 22 ||||||||||||||||||||| Sbjct: 155539 tcacataatatatccatggaa 155559
>emb|BX248402.13| Zebrafish DNA sequence from clone CH211-226P14 in linkage group 14, complete sequence Length = 137130 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 atgacatcaccatcattacagaaac 249 |||||||||||||||||||| |||| Sbjct: 27486 atgacatcaccatcattacataaac 27462
>emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, complete sequence Length = 201461 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 atgacatcaccatcattacagaaac 249 |||||||||||||||||||| |||| Sbjct: 188699 atgacatcaccatcattacataaac 188723
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 caagattgttgaacagaaaat 160 ||||||||||||||||||||| Sbjct: 6740764 caagattgttgaacagaaaat 6740784
>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1131G07 Length = 133992 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 caagattgttgaacagaaaat 160 ||||||||||||||||||||| Sbjct: 61817 caagattgttgaacagaaaat 61837
>gb|DQ186202.1| Thalassiosira pseudonana mitochondrion, complete genome Length = 43827 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tatccatggaacttttatat 31 |||||||||||||||||||| Sbjct: 19085 tatccatggaacttttatat 19104
>gb|AC101677.8| Mus musculus chromosome 10, clone RP23-138N1, complete sequence Length = 206087 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 atgacatcaccatcattaca 244 |||||||||||||||||||| Sbjct: 32100 atgacatcaccatcattaca 32119
>emb|CR931735.1| Medicago truncatula chromosome 5 clone mth2-37f4, COMPLETE SEQUENCE Length = 114414 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 aaatacataactaagatgat 112 |||||||||||||||||||| Sbjct: 70952 aaatacataactaagatgat 70971
>gb|AC146572.11| Medicago truncatula clone mth2-104c10, complete sequence Length = 109548 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 aaatacataactaagatgat 112 |||||||||||||||||||| Sbjct: 645 aaatacataactaagatgat 664
>gb|AC022395.4| Homo sapiens chromosome 10 clone RP11-354M20, complete sequence Length = 193669 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 aactaagatgatacatttgc 120 |||||||||||||||||||| Sbjct: 96493 aactaagatgatacatttgc 96512
>gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3p, complete sequence Length = 177721 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aagattgttgaacagaaaat 160 |||||||||||||||||||| Sbjct: 113658 aagattgttgaacagaaaat 113677
>gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206425 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 atgacatcaccatcattaca 244 |||||||||||||||||||| Sbjct: 52069 atgacatcaccatcattaca 52050
>gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116556 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cagactgaatgacatcacca 236 |||||||||||||||||||| Sbjct: 64821 cagactgaatgacatcacca 64802
>gb|AC084654.1|CBRG45O23 Caenorhabditis briggsae cosmid G45O23, complete sequence Length = 34686 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 acagaaatacataactaaga 108 |||||||||||||||||||| Sbjct: 19747 acagaaatacataactaaga 19766
>gb|AY128102.1| Lycopersicon esculentum isolate vis1-lta small heat shock protein (vis1) gene, complete cds Length = 2257 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 actcttattggaacgagggaaaaa 88 |||||||||||||||| ||||||| Sbjct: 1736 actcttattggaacgaaggaaaaa 1713
>gb|AY128101.1| Lycopersicon esculentum isolate vis1-hta small heat shock protein (vis1) gene, complete cds Length = 2224 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 actcttattggaacgagggaaaaa 88 |||||||||||||||| ||||||| Sbjct: 1703 actcttattggaacgaaggaaaaa 1680
>gb|AC008498.3|AC008498 Homo sapiens chromosome 5 clone CTC-436P18, complete sequence Length = 217898 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaaaaacagaaatacataac 103 |||||||||||||||||||| Sbjct: 161134 aaaaaacagaaatacataac 161153
>gb|AC155325.5| Mus musculus 10 BAC RP24-86C24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 171402 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 atgacatcaccatcattaca 244 |||||||||||||||||||| Sbjct: 34723 atgacatcaccatcattaca 34704
>gb|AC005879.3|AC005879 citb_287_c_20, complete sequence Length = 190982 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 aactaagatgatacatttgc 120 |||||||||||||||||||| Sbjct: 32396 aactaagatgatacatttgc 32377
>gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complete sequence Length = 227073 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaaaaacagaaatacataac 103 |||||||||||||||||||| Sbjct: 101064 aaaaaacagaaatacataac 101083
>gb|AY487430.1| Uncultured organism clone 2A15 nitrilase (BD5338) gene, complete cds Length = 1047 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 ccttggccatagaaatcatgccca 194 |||||||||| ||||||||||||| Sbjct: 862 ccttggccattgaaatcatgccca 839
>gb|AC068314.6| Homo sapiens chromosome 3 clone RP11-194D21 map 3p, complete sequence Length = 179814 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aagattgttgaacagaaaat 160 |||||||||||||||||||| Sbjct: 3697 aagattgttgaacagaaaat 3716 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,279,836 Number of Sequences: 3902068 Number of extensions: 3279836 Number of successful extensions: 66243 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66154 Number of HSP's gapped (non-prelim): 79 length of query: 315 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 293 effective length of database: 17,147,199,772 effective search space: 5024129533196 effective search space used: 5024129533196 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)