| Clone Name | rbaet91d09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC159438.1| Trypanosoma brucei chromosome 8 clone RPCI93-29O4, complete sequence Length = 138187 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Plus Query: 238 ggactcgagaactcttcatccaatccaaac 267 ||||| ||||||||||||||| |||||||| Sbjct: 64167 ggactggagaactcttcatccgatccaaac 64196 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Plus Query: 238 ggactcgagaactcttcatccaatccaaac 267 ||||| ||||||||||||||| |||||||| Sbjct: 58033 ggactggagaactcttcatccgatccaaac 58062
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Plus Query: 238 ggactcgagaactcttcatccaatccaaac 267 ||||| ||||||||||||||| |||||||| Sbjct: 381620 ggactggagaactcttcatccgatccaaac 381649 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Plus Query: 238 ggactcgagaactcttcatccaatccaaac 267 ||||| ||||||||||||||| |||||||| Sbjct: 375486 ggactggagaactcttcatccgatccaaac 375515
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 93 gataataaaactatataaacat 114 |||||||||||||||||||||| Sbjct: 630581 gataataaaactatataaacat 630602
>gb|AF507073.2| Trypanosoma brucei vacuolar-type Ca2+-ATPase gene, complete cds Length = 15626 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Minus Query: 238 ggactcgagaactcttcatccaatccaaac 267 ||||| ||||||||||||||| |||||||| Sbjct: 15561 ggactggagaactcttcatccgatccaaac 15532
>gb|AF359561.1| Trypanosoma brucei vacuolar-type Ca2+-ATPase (TbA1) gene, complete cds Length = 5430 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Minus Query: 238 ggactcgagaactcttcatccaatccaaac 267 ||||| ||||||||||||||| |||||||| Sbjct: 5365 ggactggagaactcttcatccgatccaaac 5336
>gb|CP000318.1| Polaromonas sp. JS666 plasmid 2, complete sequence Length = 338007 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 gcagctgcggccgtagccttgg 347 |||||||||||||||||||||| Sbjct: 102309 gcagctgcggccgtagccttgg 102330
>gb|AE014219.1| Streptococcus agalactiae 2603V/R section 29 of 100 of the complete genome Length = 22690 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 93 gataataaaactatataaacat 114 |||||||||||||||||||||| Sbjct: 1747 gataataaaactatataaacat 1768
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 306 cgacggcctccttgccgccggc 327 |||||||||||||||||||||| Sbjct: 293549 cgacggcctccttgccgccggc 293528
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 306 cgacggcctccttgccgccggc 327 |||||||||||||||||||||| Sbjct: 212435 cgacggcctccttgccgccggc 212414
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 306 cgacggcctccttgccgccggc 327 |||||||||||||||||||||| Sbjct: 36268 cgacggcctccttgccgccggc 36289
>emb|AL766846.1|SAG766846 Streptococcus agalactiae NEM316 complete genome, segment 4 Length = 224050 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 93 gataataaaactatataaacat 114 |||||||||||||||||||||| Sbjct: 54568 gataataaaactatataaacat 54589
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 ataataaaactatataaacat 114 ||||||||||||||||||||| Sbjct: 1692825 ataataaaactatataaacat 1692805
>gb|AC016687.5| Homo sapiens BAC clone RP11-79E3 from 4, complete sequence Length = 162371 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 ataataaaactatataaacat 114 ||||||||||||||||||||| Sbjct: 19704 ataataaaactatataaacat 19684
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01, complete sequence Length = 117724 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 18259 aaaactatataaaaatcatatgaa 18236
>ref|XM_417082.1| PREDICTED: Gallus gallus similar to Conserved oligomeric Golgi complex component 6 (LOC418888), mRNA Length = 4757 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gaaagagcagataataaaac 103 |||||||||||||||||||| Sbjct: 3330 gaaagagcagataataaaac 3349
>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04, complete sequence Length = 133271 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 73913 aaaactatataaaaatcatatgaa 73936
>gb|AC091094.2| Felis catus clone RP86-317G18, complete sequence Length = 134762 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cctaaaataaaatctgagaa 24 |||||||||||||||||||| Sbjct: 3710 cctaaaataaaatctgagaa 3729
>gb|AC091382.3| Felis catus clone RP86-264L24, complete sequence Length = 128743 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cctaaaataaaatctgagaa 24 |||||||||||||||||||| Sbjct: 79724 cctaaaataaaatctgagaa 79743
>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence Length = 214405 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 tggactcgagaactcttcat 256 |||||||||||||||||||| Sbjct: 112329 tggactcgagaactcttcat 112310
>ref|XM_724269.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01580) partial mRNA Length = 4593 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 aaacagattatagaagatagtaat 221 ||||||| |||||||||||||||| Sbjct: 4243 aaacagaatatagaagatagtaat 4266
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 50336 aaaactatataaaaatcatatgaa 50313
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 27929 aaaactatataaaaatcatatgaa 27906
>gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence Length = 132900 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 86230 aaaactatataaaaatcatatgaa 86207
>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08, complete sequence Length = 157734 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 150805 aaaactatataaaaatcatatgaa 150782
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence Length = 149892 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 44392 aaaactatataaaaatcatatgaa 44369
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 29241346 aaaactatataaaaatcatatgaa 29241323
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 20743275 aaaactatataaaaatcatatgaa 20743252
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 20080261 aaaactatataaaaatcatatgaa 20080284
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 8666753 aaaactatataaaaatcatatgaa 8666730
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 26472091 aaaactatataaaaatcatatgaa 26472114 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 8491279 aaaactatataaaaatcatatgaa 8491256
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 14289473 aaaactatataaaaatcatatgaa 14289450 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 2398313 aaaactatataaaaatcatatgaa 2398336
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 17362 aaaactatataaaaatcatatgaa 17385
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 96549 aaaactatataaaaatcatatgaa 96526
>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0669H03 Length = 167878 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 23747 aaaactatataaaaatcatatgaa 23724
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 122872 aaaactatataaaaatcatatgaa 122849
>emb|BX957244.15| Zebrafish DNA sequence from clone CH211-13C6 in linkage group 19, complete sequence Length = 162321 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 taaaactatataaacatcat 117 |||||||||||||||||||| Sbjct: 137781 taaaactatataaacatcat 137800
>gb|AC110192.14| Mus musculus chromosome 7, clone RP23-227K15, complete sequence Length = 181287 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 taataaaactatataaacat 114 |||||||||||||||||||| Sbjct: 40305 taataaaactatataaacat 40324
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 20091537 aaaactatataaaaatcatatgaa 20091560
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaaactatataaacatcatatgaa 122 ||||||||||||| |||||||||| Sbjct: 21053510 aaaactatataaaaatcatatgaa 21053487
>emb|BX005329.9| Zebrafish DNA sequence from clone DKEY-222F2, complete sequence Length = 186928 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 aataaaactatataaacatc 115 |||||||||||||||||||| Sbjct: 14563 aataaaactatataaacatc 14582
>emb|AL844901.8| Mouse DNA sequence from clone RP23-158F12 on chromosome 2, complete sequence Length = 200364 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 taaaactatataaacatcat 117 |||||||||||||||||||| Sbjct: 51887 taaaactatataaacatcat 51906 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,302,789 Number of Sequences: 3902068 Number of extensions: 3302789 Number of successful extensions: 60616 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60346 Number of HSP's gapped (non-prelim): 270 length of query: 357 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 335 effective length of database: 17,147,199,772 effective search space: 5744311923620 effective search space used: 5744311923620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)