ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet91c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 48 6e-06
2DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 30 1.6
3DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 28 7.9

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 24/28 (85%), Positives = 26/28 (92%), Gaps = 2/28 (7%)
 Frame = -2

Query: 284 KEGKLANLLAWRAEEDSLEE--GAVLCE 207
           KEGKLANLLAWRAEE+SLEE  GA+LCE
Sbjct: 366 KEGKLANLLAWRAEEESLEEGTGALLCE 393



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 284 KEGKLANLLAWRAEEDSLEEGA 219
           K+ KLANLL W  E D++EE A
Sbjct: 374 KDYKLANLLCWEEEADAMEEKA 395



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -2

Query: 284 KEGKLANLLAWRAEEDSLEE 225
           KEGKL NLL W   ED+LEE
Sbjct: 374 KEGKLGNLLPW--GEDALEE 391


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,750,291
Number of Sequences: 219361
Number of extensions: 470178
Number of successful extensions: 1061
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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