ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet91c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Trit... 345 5e-92
2gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine de... 268 9e-69
3emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 56 6e-05
4emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine de... 56 6e-05
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 6e-05
6gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarbo... 56 6e-05
7dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
8dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
9dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
10dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
11dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
12emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 56 6e-05
13emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 56 6e-05
14gb|BT016840.1| Zea mays clone Contig673 mRNA sequence 48 0.015
15emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine deca... 48 0.015
16gb|AY103590.1| Zea mays PCO098412 mRNA sequence 48 0.015
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.060
18dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.060
19dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 g... 46 0.060
20dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.060
21dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.060
22dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.060
23dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.060
24gb|AY032614.1| Triticum aestivum receptor-like kinase (Wrlk-S3-9... 44 0.24
25gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33... 44 0.24
26gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (L... 44 0.24
27emb|CR847994.10| Zebrafish DNA sequence from clone CH211-203H15 ... 44 0.24
28emb|AL591979.1| Listeria monocytogenes strain EGD, complete geno... 42 0.94
29dbj|AB023064.1| Listeria monocytogenes DNA for DnaK operon, comp... 42 0.94
30emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chr... 40 3.7
31gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 3.7
32emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, ... 40 3.7
33emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6,... 40 3.7 
>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for
            S-adenosylmethionine decarboxylase
          Length = 1893

 Score =  345 bits (174), Expect = 5e-92
 Identities = 257/282 (91%), Gaps = 12/282 (4%)
 Strand = Plus / Minus

                                                                        
Query: 13   tgcttatttataagttgtgacagattttctccaaacagtacgctcattgtggcagacgca 72
            ||||||||||||||||||| ||  | |||||||||||||| |||||||||||||||||||
Sbjct: 1885 tgcttatttataagttgtgccaactcttctccaaacagtatgctcattgtggcagacgca 1826

                                                                        
Query: 73   gcaaaccacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcac 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 gcaaaccacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcac 1766

                                                                        
Query: 133  agtaaccaaaacgacaaacg---gaagtcagaacgaattccacagacggaacagcgacag 189
            ||||||| |||||||  |||     |||||||||||||| ||||||||||||||||||||
Sbjct: 1765 agtaacc-aaacgacgcacgacaacagtcagaacgaattacacagacggaacagcgacag 1707

                                                                        
Query: 190  caaaaatcatcttatcactcgcacagcaccgc------gccctcctccagagaatcctcc 243
            |  ||||||||||||||||||||||||| |||      ||||||||| ||||| ||||||
Sbjct: 1706 c--aaatcatcttatcactcgcacagcaacgcgcctgtgccctcctcgagagactcctcc 1649

                                                      
Query: 244  tccgcccgccatgcgagcaggttggcaagcttgccttccttg 285
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1648 tccgcccgccatgcgagcaggttggcaagcttgccttccttg 1607
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>gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine decarboxylase precursor, mRNA,
            complete cds
          Length = 1386

 Score =  268 bits (135), Expect = 9e-69
 Identities = 195/210 (92%), Gaps = 5/210 (2%)
 Strand = Plus / Minus

                                                                        
Query: 77   accacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcacagta 136
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1378 accacctagagctaatagtttattcagag-agcaatagcctggccggctgcttcacagta 1320

                                                                        
Query: 137  accaaaacgacaaacgga-agtcagaacgaattccacagacggaacagcgacagcaaaaa 195
            |||||| |||||||| || ||||||||| ||||||||||| |||| ||||||||||||  
Sbjct: 1319 accaaa-cgacaaactgacagtcagaacaaattccacagatggaatagcgacagcaaa-- 1263

                                                                        
Query: 196  tcatcttatcactcgcacagcaccgcgccctcctccagagaatcctcctccgcccgccat 255
            |||| |  |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1262 tcatgtcttcactcgcacagcaccgcgccctcttccagagaatcctcctccgcccgccat 1203

                                          
Query: 256  gcgagcaggttggcaagcttgccttccttg 285
            ||||| |||||||| |||||||||||||||
Sbjct: 1202 gcgaggaggttggcgagcttgccttccttg 1173
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 54    gctcattgtggcagacgcagcaaaccacctagagct 89
             |||||||||||||||||||||  |||||||||||||
Sbjct: 13891 gctcattgtggcagacgcagctgaccacctagagct 13856



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 110   aatagcctggccggctgcttcacag 134
             ||||||||||| |||||||||||||
Sbjct: 13782 aatagcctggctggctgcttcacag 13758
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>emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase
          Length = 2036

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 54   gctcattgtggcagacgcagcaaaccacctagagct 89
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1950 gctcattgtggcagacgcagctgaccacctagagct 1915



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 110  aatagcctggccggctgcttcacag 134
            ||||||||||| |||||||||||||
Sbjct: 1841 aatagcctggctggctgcttcacag 1817
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 54       gctcattgtggcagacgcagcaaaccacctagagct 89
                |||||||||||||||||||||  |||||||||||||
Sbjct: 24893306 gctcattgtggcagacgcagctgaccacctagagct 24893271



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 110      aatagcctggccggctgcttcacag 134
                ||||||||||| |||||||||||||
Sbjct: 24893197 aatagcctggctggctgcttcacag 24893173
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>gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarboxylase mRNA, complete cds
          Length = 1560

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 54   gctcattgtggcagacgcagcaaaccacctagagct 89
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1501 gctcattgtggcagacgcagctgaccacctagagct 1466



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 110  aatagcctggccggctgcttcacag 134
            ||||||||||| |||||||||||||
Sbjct: 1392 aatagcctggctggctgcttcacag 1368
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>dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full
            insert sequence
          Length = 2063

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 54   gctcattgtggcagacgcagcaaaccacctagagct 89
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 110  aatagcctggccggctgcttcacag 134
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full
            insert sequence
          Length = 2059

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 54   gctcattgtggcagacgcagcaaaccacctagagct 89
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 110  aatagcctggccggctgcttcacag 134
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full
            insert sequence
          Length = 2711

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 54   gctcattgtggcagacgcagcaaaccacctagagct 89
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 110  aatagcctggccggctgcttcacag 134
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full
            insert sequence
          Length = 2063

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 54   gctcattgtggcagacgcagcaaaccacctagagct 89
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1994 gctcattgtggcagacgcagctgaccacctagagct 1959



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 110  aatagcctggccggctgcttcacag 134
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861
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>dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D05, full
            insert sequence
          Length = 1217

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 54   gctcattgtggcagacgcagcaaaccacctagagct 89
            |||||||||||||||||||||  |||||||||||||
Sbjct: 1152 gctcattgtggcagacgcagctgaccacctagagct 1117



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 110  aatagcctggccggctgcttcacag 134
            ||||||||||| |||||||||||||
Sbjct: 1043 aatagcctggctggctgcttcacag 1019
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 54    gctcattgtggcagacgcagcaaaccacctagagct 89
             |||||||||||||||||||||  |||||||||||||
Sbjct: 13919 gctcattgtggcagacgcagctgaccacctagagct 13884



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 110   aatagcctggccggctgcttcacag 134
             ||||||||||| |||||||||||||
Sbjct: 13810 aatagcctggctggctgcttcacag 13786
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 54     gctcattgtggcagacgcagcaaaccacctagagct 89
              |||||||||||||||||||||  |||||||||||||
Sbjct: 155022 gctcattgtggcagacgcagctgaccacctagagct 154987



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 110    aatagcctggccggctgcttcacag 134
              ||||||||||| |||||||||||||
Sbjct: 154913 aatagcctggctggctgcttcacag 154889
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>gb|BT016840.1| Zea mays clone Contig673 mRNA sequence
          Length = 1866

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 54  gctcattgtggcagacgcagcaaaccacctagagct 89
           ||||||||||| |||||||||  |||||||||||||
Sbjct: 109 gctcattgtggtagacgcagctgaccacctagagct 144
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>emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine decarboxylase
          Length = 1873

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 54   gctcattgtggcagacgcagcaaaccacctagagct 89
            ||||||||||| |||||||||  |||||||||||||
Sbjct: 1789 gctcattgtggtagacgcagctgaccacctagagct 1754
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>gb|AY103590.1| Zea mays PCO098412 mRNA sequence
          Length = 2400

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 54   gctcattgtggcagacgcagcaaaccacctagagct 89
            ||||||||||| |||||||||  |||||||||||||
Sbjct: 2038 gctcattgtggtagacgcagctgaccacctagagct 2003
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 62       tggcagacgcagcaaaccacctagagc 88
                ||||||||||||||||||| |||||||
Sbjct: 15331175 tggcagacgcagcaaaccatctagagc 15331201
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>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0418B08
          Length = 165909

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 62     tggcagacgcagcaaaccacctagagc 88
              ||||||||||||||||||| |||||||
Sbjct: 110364 tggcagacgcagcaaaccatctagagc 110390
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>dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1  gene for
            S-adenosylmethionine decarboxylase, complete cds
          Length = 2952

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 62   tggcagacgcagcaaaccacctagagc 88
            ||||||||||||||||||| |||||||
Sbjct: 2817 tggcagacgcagcaaaccatctagagc 2791
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>dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full
            insert sequence
          Length = 2047

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 62   tggcagacgcagcaaaccacctagagc 88
            ||||||||||||||||||| |||||||
Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
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>dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full
            insert sequence
          Length = 2002

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 62   tggcagacgcagcaaaccacctagagc 88
            ||||||||||||||||||| |||||||
Sbjct: 1918 tggcagacgcagcaaaccatctagagc 1892
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>dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full
            insert sequence
          Length = 2546

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 62   tggcagacgcagcaaaccacctagagc 88
            ||||||||||||||||||| |||||||
Sbjct: 2443 tggcagacgcagcaaaccatctagagc 2417
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>dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full
            insert sequence
          Length = 2034

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 62   tggcagacgcagcaaaccacctagagc 88
            ||||||||||||||||||| |||||||
Sbjct: 1917 tggcagacgcagcaaaccatctagagc 1891
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>gb|AY032614.1| Triticum aestivum receptor-like kinase (Wrlk-S3-9) gene, partial cds
          Length = 2389

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 22   ataagttgtgacagattttctc 43
            ||||||||||||||||||||||
Sbjct: 1265 ataagttgtgacagattttctc 1286
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>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds
          Length = 20754

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 22   ataagttgtgacagattttctc 43
            ||||||||||||||||||||||
Sbjct: 8297 ataagttgtgacagattttctc 8276
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>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and
             LRK19 (Lrk19) genes, complete cds
          Length = 35872

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 22    ataagttgtgacagattttctc 43
             ||||||||||||||||||||||
Sbjct: 29615 ataagttgtgacagattttctc 29636
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>emb|CR847994.10| Zebrafish DNA sequence from clone CH211-203H15 in linkage group 4,
             complete sequence
          Length = 100991

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 27    ttgtgacagattttctccaaac 48
             ||||||||||||||||||||||
Sbjct: 68540 ttgtgacagattttctccaaac 68561
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>emb|AL591979.1| Listeria monocytogenes strain EGD, complete genome, segment 7/12
          Length = 240050

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 229   tccagagaatcctcctccgcc 249
             |||||||||||||||||||||
Sbjct: 94892 tccagagaatcctcctccgcc 94912
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>dbj|AB023064.1| Listeria monocytogenes DNA for DnaK operon, complete cds
          Length = 8881

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 229  tccagagaatcctcctccgcc 249
            |||||||||||||||||||||
Sbjct: 4201 tccagagaatcctcctccgcc 4181
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>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the 5'
              end of the SLC24A2 gene for solute carrier family 24
              (sodium/potassium/calcium exchanger), member 2 (NCKX2) and
              a CpG island, complete sequence
          Length = 159900

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 18     atttataagttgtgacagattttctcca 45
              |||| ||||||||||||| |||||||||
Sbjct: 129003 atttttaagttgtgacagtttttctcca 129030
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    gagcaggttggcaagcttgc 277
              ||||||||||||||||||||
Sbjct: 494503 gagcaggttggcaagcttgc 494484
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>emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, exons 1-17
          Length = 24990

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   tgcttcacagtaaccaaaac 144
             ||||||||||||||||||||
Sbjct: 19045 tgcttcacagtaaccaaaac 19064
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>emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6, complete sequence
          Length = 147211

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 18   atttataagttgtgacagattttctcca 45
            |||| ||||||||||||| |||||||||
Sbjct: 2513 atttttaagttgtgacagtttttctcca 2540


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,333,032
Number of Sequences: 3902068
Number of extensions: 2333032
Number of successful extensions: 65663
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65555
Number of HSP's gapped (non-prelim): 104
length of query: 285
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 263
effective length of database: 17,147,199,772
effective search space: 4509713540036
effective search space used: 4509713540036
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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