ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet90f04 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 60.5 bits (145), Expect = 1e-09 Identities = 27/28 (96%), Positives = 28/28 (100%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQLES 206 +QPSDTDLGAKAPKDVKIQGVWYAQLES Sbjct: 302 IQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 58.5 bits (140), Expect = 4e-09 Identities = 25/28 (89%), Positives = 27/28 (96%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQLES 206 +QPSDTDLGAK PKDVKIQG+WYAQLES Sbjct: 306 IQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 57.4 bits (137), Expect = 9e-09 Identities = 24/27 (88%), Positives = 27/27 (100%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQLE 209 +QPSDTDLG+KAPKDVKIQG+WYAQLE Sbjct: 303 IQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 57.0 bits (136), Expect = 1e-08 Identities = 24/27 (88%), Positives = 26/27 (96%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQLE 209 +QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 306 IQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 57.0 bits (136), Expect = 1e-08 Identities = 24/27 (88%), Positives = 26/27 (96%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQLE 209 +QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 303 IQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 55.5 bits (132), Expect = 3e-08 Identities = 24/27 (88%), Positives = 26/27 (96%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQLE 209 +QPSDTDLGAK PKDVKI+GVWYAQLE Sbjct: 304 LQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 55.1 bits (131), Expect = 5e-08 Identities = 24/27 (88%), Positives = 25/27 (92%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQLE 209 +QPSDTDLGAK PKDVKIQGVWY QLE Sbjct: 306 LQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 54.3 bits (129), Expect = 8e-08 Identities = 23/27 (85%), Positives = 25/27 (92%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQLE 209 +QPSDTDLGAK PKDVKIQGVWY Q+E Sbjct: 305 LQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 52.8 bits (125), Expect = 2e-07 Identities = 26/29 (89%), Positives = 27/29 (93%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQLESN 203 VQPSDTDL +APKDVKIQGVWYAQLESN Sbjct: 299 VQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 51.2 bits (121), Expect = 7e-07 Identities = 20/27 (74%), Positives = 25/27 (92%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQLE 209 +QPSDTDLGAK PKD+K+ G+WYAQL+ Sbjct: 265 IQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 50.4 bits (119), Expect = 1e-06 Identities = 20/26 (76%), Positives = 23/26 (88%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQL 212 +QPSDTDLGAK PKD+K GVWYAQ+ Sbjct: 309 IQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 49.7 bits (117), Expect = 2e-06 Identities = 20/26 (76%), Positives = 23/26 (88%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQL 212 +QPSDTDLGAK PKD+KI G+WY QL Sbjct: 266 IQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 43.5 bits (101), Expect = 1e-04 Identities = 18/26 (69%), Positives = 24/26 (92%) Frame = -3 Query: 286 QPSDTDLGAKAPKDVKIQGVWYAQLE 209 QPSDTDLGA PK+VKI+G++YA++E Sbjct: 248 QPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 42.4 bits (98), Expect = 3e-04 Identities = 16/28 (57%), Positives = 25/28 (89%) Frame = -3 Query: 286 QPSDTDLGAKAPKDVKIQGVWYAQLESN 203 QPSDTDLGAK P DVK++G++Y +++++ Sbjct: 246 QPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/25 (68%), Positives = 23/25 (92%) Frame = -3 Query: 286 QPSDTDLGAKAPKDVKIQGVWYAQL 212 QPSDTDLGAK P +VKI+G++YA++ Sbjct: 247 QPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 36.2 bits (82), Expect = 0.022 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = -3 Query: 286 QPSDTDLGAKAPKDVKIQGVWYAQLE 209 Q SD D+GA P +VKIQGV+YA +E Sbjct: 245 QLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 36.2 bits (82), Expect = 0.022 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = -3 Query: 286 QPSDTDLGAKAPKDVKIQGVWYAQLE 209 Q SD D+GA P +VKIQGV+YA +E Sbjct: 245 QLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 35.4 bits (80), Expect = 0.037 Identities = 14/27 (51%), Positives = 20/27 (74%) Frame = -3 Query: 289 VQPSDTDLGAKAPKDVKIQGVWYAQLE 209 +QPSDTD+G K DVK+ G +Y ++E Sbjct: 247 IQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) Length = 373 Score = 31.2 bits (69), Expect = 0.71 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = -3 Query: 286 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIRGLVGGKERIEAPMC 113 QP + KD+K++G W +Q + N S E K IL C IR + R+ AP C Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLCNLIR-----QGRLTAPSC 345
>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1) Length = 373 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -3 Query: 286 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 155 QP + KD+K++G W +Q + N S E K ILI C IR Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336
>SYA_THEAC (Q9HJW4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 871 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 122 CLDSFLSTDQPTYACTKDEYLHFCYALVRLELGV 223 C DSF + D+ Y K+E +H+CY + LG+ Sbjct: 149 CHDSFNTKDKTVY--WKEETVHYCYDFLTEGLGI 180 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,584,556 Number of Sequences: 219361 Number of extensions: 832261 Number of successful extensions: 1860 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1841 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1859 length of database: 80,573,946 effective HSP length: 72 effective length of database: 64,779,954 effective search space used: 1554718896 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
