ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet90e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit... 837 0.0
2ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA 278 1e-71
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 278 1e-71
4gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 geno... 278 1e-71
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 278 1e-71
6dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 1e-71
7dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 1e-71
8dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 1e-71
9gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit prec... 278 1e-71
10gb|AY103687.1| Zea mays PCO106710 mRNA sequence 266 5e-68
11gb|AF139468.2|AF139468 Vigna radiata photosystem I reaction cent... 54 4e-04
12dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 48 0.024
13gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 48 0.024
14ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-li... 44 0.37
15emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 44 0.37
16emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 44 0.37
17emb|BX814457.1|CNS0ADUS Arabidopsis thaliana Full-length cDNA Co... 44 0.37
18dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.37
19dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.37
20gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 1.5
21gb|AC026866.8| Homo sapiens BAC clone RP11-420P20 from 7, comple... 42 1.5
22gb|AC140949.1| Pan troglodytes BAC clone RP43-168N2 from 7, comp... 42 1.5
23emb|AL513210.32| Human DNA sequence from clone RP11-35J6 on chro... 42 1.5
24gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 42 1.5
25dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
26dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
27gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.5
28gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
29emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
30ref|XM_471550.1| Oryza sativa (japonica cultivar-group), predic... 40 5.8
31ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothet... 40 5.8
32gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's H... 40 5.8
33gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.8
34gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 5.8
35emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.8
36gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.8
37emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chr... 40 5.8
38emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.8
39emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 40 5.8
40emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 40 5.8
41emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 5.8
42emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
43gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
44gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, comp... 40 5.8
45gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co... 40 5.8
46gb|AE012083.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.8
47gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 40 5.8
48gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, comp... 40 5.8
49gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 5.8
50gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.8
51gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.8
52dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
53dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.8
54emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo ... 40 5.8
55emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 5.8
56gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 5.8
57gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8 
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA,
           complete cds
          Length = 990

 Score =  837 bits (422), Expect = 0.0
 Identities = 431/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaatcgttctcaacaatttgaacaatggtaaaatacacacgtgtgaagagagaacacaat 61
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 985 aaatcgttctcaacaatttgaacaatggtaaaatacacacatgtgaagagagaacacaat 926

                                                                       
Query: 62  agttatacaagattgggttcagtttcttaaatacaagagaggttccatttctccatgatc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 agttatacaagattgggttcagtttcttaaatacaagagaggttccatttctccatgatc 866

                                                                       
Query: 122 ctatcagctcctacaccaagcccacacagatcgacaccacaagccctcatcctccgctgc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ctatcagctcctacaccaagcccacacagatcgacaccacaagccctcatcctccgctgc 806

                                                                       
Query: 182 ccatctgacttaggaccgactagccaaccacgcacgcatggcagctagttagtagccgat 241
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 805 ccatctgacttgggaccgactagccaaccacgcacgcatggcagctacttagtagccgat 746

                                                                       
Query: 242 gtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcggcgacgggcca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcggcgacgggcca 686

                                                                       
Query: 302 gatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatgatctccctcat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatgatctccctcat 626

                                                                       
Query: 362 ggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgacccagccgatcca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgacccagccgatcca 566

                         
Query: 422 gccggcgatgtaga 435
           ||||||||||||||
Sbjct: 565 gccggcgatgtaga 552
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>ref|NM_184976.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1038

 Score =  278 bits (140), Expect = 1e-71
 Identities = 188/204 (92%)
 Strand = Plus / Minus

                                                                       
Query: 232 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 291
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 778 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 719

                                                                       
Query: 292 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 351
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 718 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 659

                                                                       
Query: 352 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 411
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 658 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 599

                                   
Query: 412 agccgatccagccggcgatgtaga 435
           ||||||||||||||||||||||||
Sbjct: 598 agccgatccagccggcgatgtaga 575



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 84  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 138
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 921 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 867
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  278 bits (140), Expect = 1e-71
 Identities = 188/204 (92%)
 Strand = Plus / Plus

                                                                            
Query: 232      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 291
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 31969474 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 31969533

                                                                            
Query: 292      cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 351
                |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 31969534 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 31969593

                                                                            
Query: 352      tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 411
                ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 31969594 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 31969653

                                        
Query: 412      agccgatccagccggcgatgtaga 435
                ||||||||||||||||||||||||
Sbjct: 31969654 agccgatccagccggcgatgtaga 31969677



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 84       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 138
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 31969219 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 31969273
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>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete
             sequence
          Length = 144306

 Score =  278 bits (140), Expect = 1e-71
 Identities = 188/204 (92%)
 Strand = Plus / Plus

                                                                         
Query: 232   agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 291
             ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 61426 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 61485

                                                                         
Query: 292   cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 351
             |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 61486 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 61545

                                                                         
Query: 352   tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 411
             ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 61546 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 61605

                                     
Query: 412   agccgatccagccggcgatgtaga 435
             ||||||||||||||||||||||||
Sbjct: 61606 agccgatccagccggcgatgtaga 61629



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                    
Query: 84    tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 138
             |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 61171 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 61225
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  278 bits (140), Expect = 1e-71
 Identities = 188/204 (92%)
 Strand = Plus / Plus

                                                                            
Query: 232      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 291
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 32059986 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 32060045

                                                                            
Query: 292      cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 351
                |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 32060046 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 32060105

                                                                            
Query: 352      tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 411
                ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 32060106 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 32060165

                                        
Query: 412      agccgatccagccggcgatgtaga 435
                ||||||||||||||||||||||||
Sbjct: 32060166 agccgatccagccggcgatgtaga 32060189



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 84       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 138
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 32059731 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 32059785
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>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full
           insert sequence
          Length = 967

 Score =  278 bits (140), Expect = 1e-71
 Identities = 188/204 (92%)
 Strand = Plus / Minus

                                                                       
Query: 232 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 291
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 742 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 683

                                                                       
Query: 292 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 351
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 682 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 623

                                                                       
Query: 352 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 411
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 622 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 563

                                   
Query: 412 agccgatccagccggcgatgtaga 435
           ||||||||||||||||||||||||
Sbjct: 562 agccgatccagccggcgatgtaga 539



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 84  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 138
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 890 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 836
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>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full
           insert sequence
          Length = 997

 Score =  278 bits (140), Expect = 1e-71
 Identities = 188/204 (92%)
 Strand = Plus / Minus

                                                                       
Query: 232 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 291
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 777 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 718

                                                                       
Query: 292 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 351
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 717 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 658

                                                                       
Query: 352 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 411
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 657 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 598

                                   
Query: 412 agccgatccagccggcgatgtaga 435
           ||||||||||||||||||||||||
Sbjct: 597 agccgatccagccggcgatgtaga 574



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 84  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 138
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 920 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 866
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>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full
           insert sequence
          Length = 990

 Score =  278 bits (140), Expect = 1e-71
 Identities = 188/204 (92%)
 Strand = Plus / Minus

                                                                       
Query: 232 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 291
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 765 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 706

                                                                       
Query: 292 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 351
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 705 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 646

                                                                       
Query: 352 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 411
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 645 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 586

                                   
Query: 412 agccgatccagccggcgatgtaga 435
           ||||||||||||||||||||||||
Sbjct: 585 agccgatccagccggcgatgtaga 562



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 84  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 138
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 913 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 859
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>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA,
           complete cds
          Length = 996

 Score =  278 bits (140), Expect = 1e-71
 Identities = 188/204 (92%)
 Strand = Plus / Minus

                                                                       
Query: 232 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 291
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 758 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 699

                                                                       
Query: 292 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 351
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 698 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 639

                                                                       
Query: 352 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 411
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 638 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 579

                                   
Query: 412 agccgatccagccggcgatgtaga 435
           ||||||||||||||||||||||||
Sbjct: 578 agccgatccagccggcgatgtaga 555



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 84  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 138
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 901 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 847
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>gb|AY103687.1| Zea mays PCO106710 mRNA sequence
          Length = 1242

 Score =  266 bits (134), Expect = 5e-68
 Identities = 195/214 (91%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                       
Query: 222 gcagctagttagtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcg 281
           ||||||||| |||||||||||||   |||||||||||||||||| |||||||||||||||
Sbjct: 802 gcagctagt-agtagccgatgtccttgtcgtcgacgacgaggtctccgttgatgagctcg 744

                                                                       
Query: 282 cggtatgcggcgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacg 341
           ||||| || ||||||||||||||||| |||||||||| ||  | || |||||||||||||
Sbjct: 743 cggtaggccgcgacgggccagatgaaccccctggggaggaggcgggtggcgagctcgacg 684

                                                                       
Query: 342 tcgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctg 401
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 683 tcgatgatgatctccctcatggcgggcttcttctcgccgctgatggcgatgaggtagctc 624

                                             
Query: 402 cgtccgacccagccgatccagccggcgatgtaga 435
           |  |||||||| |||||||| |||||||||||||
Sbjct: 623 ctgccgacccacccgatccacccggcgatgtaga 590
to top
>gb|AF139468.2|AF139468 Vigna radiata photosystem I reaction center subunit III (CipPsaF)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 885

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                       
Query: 339 acgtcgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgaggtag 398
           |||||||||||||||||| |||| |  || || |||||  | |||| ||| || ||||||
Sbjct: 651 acgtcgatgatgatctccttcatcgtcggttttttctcatccctgatggcaataaggtag 592

                                              
Query: 399 ctgcgtccgacccagccgatccagccggcgatgta 433
           || || || ||||| |||||||| |||||||||||
Sbjct: 591 ctccgacccacccacccgatccacccggcgatgta 557
to top
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 408    acccagccgatccagccggcgatgtaga 435
              |||||||| |||||||||||||||||||
Sbjct: 346836 acccagccaatccagccggcgatgtaga 346809
to top
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 408     acccagccgatccagccggcgatgtaga 435
               |||||||| |||||||||||||||||||
Sbjct: 1273968 acccagccaatccagccggcgatgtaga 1273995
to top
>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein
           (OSJNBb0015I11.17), mRNA
          Length = 1110

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 237 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 270
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 386 ccgatgtcggcgtcggcgacgacaaggccgccgt 353
to top
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 236   gccgatgtcggcgtcgtcgacgacgaggtcgccg 269
             ||||||||| ||| ||||||||||||| ||||||
Sbjct: 38032 gccgatgtccgcgccgtcgacgacgagctcgccg 38065
to top
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 236    gccgatgtcggcgtcgtcgacgacgaggtcgccg 269
              ||||||||| ||| ||||||||||||| ||||||
Sbjct: 127590 gccgatgtccgcgccgtcgacgacgagctcgccg 127557
to top
>emb|BX814457.1|CNS0ADUS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB75ZA08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 411

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 76/94 (80%)
 Strand = Plus / Minus

                                                                       
Query: 342 tcgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctg 401
           ||||||||||||||  |||| ||||| |||||||| || || |  || |||| |||||| 
Sbjct: 212 tcgatgatgatctctttcatcgcgggtttcttctcaccactaatagctatgaagtagctt 153

                                             
Query: 402 cgtccgacccagccgatccagccggcgatgtaga 435
           | ||| ||||| |||||||| || || |||||||
Sbjct: 152 cttccaacccacccgatccatccagcaatgtaga 119
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 242     gtcggcgtcgtcgacgacgagg 263
               ||||||||||||||||||||||
Sbjct: 1139192 gtcggcgtcgtcgacgacgagg 1139213
to top
>dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F10, full
           insert sequence
          Length = 1488

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 237 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 270
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 62  ccgatgtcggcgtcggcgacgacaaggccgccgt 29
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 244     cggcgtcgtcgacgacgaggt 264
               |||||||||||||||||||||
Sbjct: 1949449 cggcgtcgtcgacgacgaggt 1949429
to top
>gb|AC026866.8| Homo sapiens BAC clone RP11-420P20 from 7, complete sequence
          Length = 179438

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    aatttgaacaatggtaaaata 36
             |||||||||||||||||||||
Sbjct: 47352 aatttgaacaatggtaaaata 47372
to top
>gb|AC140949.1| Pan troglodytes BAC clone RP43-168N2 from 7, complete sequence
          Length = 193777

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     aatttgaacaatggtaaaata 36
              |||||||||||||||||||||
Sbjct: 170684 aatttgaacaatggtaaaata 170704
to top
>emb|AL513210.32| Human DNA sequence from clone RP11-35J6 on chromosome 6 Contains six
             CpG islands, complete sequence
          Length = 157572

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 26    atggtaaaatacacacgtgtgaagagaga 54
             |||||| ||| ||||||||||||||||||
Sbjct: 82334 atggtacaatccacacgtgtgaagagaga 82306
to top
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
              sequence
          Length = 138824

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 238    cgatgtcggcgtcgtcgacgacgaggtcgccgt 270
              |||||||||||||| ||||||| ||| ||||||
Sbjct: 107077 cgatgtcggcgtcggcgacgacaaggccgccgt 107045
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 236      gccgatgtcggcgtcgtcgacgacg 260
                |||||||||| ||||||||||||||
Sbjct: 18403096 gccgatgtcgtcgtcgtcgacgacg 18403072



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 244      cggcgtcgtcgacgacgagg 263
                ||||||||||||||||||||
Sbjct: 12249186 cggcgtcgtcgacgacgagg 12249167
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 238      cgatgtcggcgtcgtcgacgacgaggtcgccgt 270
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20705625 cgatgtcggcgtcggcgacgacaaggccgccgt 20705593



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 243      tcggcgtcgtcgacgacgag 262
                ||||||||||||||||||||
Sbjct: 21068348 tcggcgtcgtcgacgacgag 21068367
to top
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 251     gtcgacgacgaggtcgccgttgatg 275
               |||||||||||||||||||| ||||
Sbjct: 1766710 gtcgacgacgaggtcgccgtcgatg 1766734
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 238      cgatgtcggcgtcgtcgacgacgaggtcgccgt 270
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20716897 cgatgtcggcgtcggcgacgacaaggccgccgt 20716865



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 243      tcggcgtcgtcgacgacgag 262
                ||||||||||||||||||||
Sbjct: 21079612 tcggcgtcgtcgacgacgag 21079631
to top
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
              complete sequence
          Length = 133413

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 236    gccgatgtcggcgtcgtcgacgacg 260
              |||||||||| ||||||||||||||
Sbjct: 105019 gccgatgtcgtcgtcgtcgacgacg 104995
to top
>ref|XM_471550.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 cggcgtcgtcgacgacgagg 263
           ||||||||||||||||||||
Sbjct: 214 cggcgtcgtcgacgacgagg 195
to top
>ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0015J15.29), mRNA
          Length = 1440

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 tcggcgtcgtcgacgacgag 262
           ||||||||||||||||||||
Sbjct: 85  tcggcgtcgtcgacgacgag 66
to top
>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 230137

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    tcttaaatacaagagaggtt 105
             ||||||||||||||||||||
Sbjct: 82654 tcttaaatacaagagaggtt 82673
to top
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 368     cttcttctcgccgctgacgg 387
               ||||||||||||||||||||
Sbjct: 3593435 cttcttctcgccgctgacgg 3593454
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 374     ctcgccgctgacggcgatga 393
               ||||||||||||||||||||
Sbjct: 1323852 ctcgccgctgacggcgatga 1323871
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 405     ccgacccagccgatccagccggcg 428
               |||| |||||||||||||||||||
Sbjct: 5065965 ccgaaccagccgatccagccggcg 5065988
to top
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 241     tgtcggcgtcgtcgacgacg 260
               ||||||||||||||||||||
Sbjct: 1625246 tgtcggcgtcgtcgacgacg 1625227
to top
>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
              sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 108    atttctccatgatcctatcagctcctac 135
              ||||||||||||||| |||| |||||||
Sbjct: 156375 atttctccatgatccaatcacctcctac 156348
to top
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 370    tcttctcgccgctgacggcgatga 393
              |||||||||||||||||| |||||
Sbjct: 190124 tcttctcgccgctgacggtgatga 190147
to top
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 370    tcttctcgccgctgacggcgatga 393
              |||||||||||||||||| |||||
Sbjct: 103960 tcttctcgccgctgacggtgatga 103983
to top
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 370    tcttctcgccgctgacggcgatga 393
              |||||||||||||||||| |||||
Sbjct: 179689 tcttctcgccgctgacggtgatga 179712
to top
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    cggcgtcgtcgacgacgagg 263
              ||||||||||||||||||||
Sbjct: 228093 cggcgtcgtcgacgacgagg 228112
to top
>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
             complete sequence
          Length = 185211

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   cggcgtcgtcgacgacgagg 263
             ||||||||||||||||||||
Sbjct: 74067 cggcgtcgtcgacgacgagg 74048
to top
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
              complete sequence
          Length = 145070

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 242    gtcggcgtcgtcgacgacgaggtcgccg 269
              |||| ||||||||||||||| |||||||
Sbjct: 102007 gtcgtcgtcgtcgacgacgacgtcgccg 102034
to top
>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence
          Length = 150750

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    caagattgggttcagtttct 88
             ||||||||||||||||||||
Sbjct: 10979 caagattgggttcagtttct 10998
to top
>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    ggttcagtttcttaaataca 96
             ||||||||||||||||||||
Sbjct: 17437 ggttcagtttcttaaataca 17456
to top
>gb|AE012083.1| Xanthomonas axonopodis pv. citri str. 306,  section 461 of 469 of the
            complete genome
          Length = 10370

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 405  ccgacccagccgatccagccggcg 428
            |||| |||||||||||||||||||
Sbjct: 1205 ccgaaccagccgatccagccggcg 1228
to top
>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete
              sequence
          Length = 144798

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 243    tcggcgtcgtcgacgacgag 262
              ||||||||||||||||||||
Sbjct: 137358 tcggcgtcgtcgacgacgag 137339
to top
>gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, complete sequence
          Length = 118755

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    caagattgggttcagtttct 88
             ||||||||||||||||||||
Sbjct: 14523 caagattgggttcagtttct 14504
to top
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 325     tggcggcgagctcgacgtcg 344
               ||||||||||||||||||||
Sbjct: 1823593 tggcggcgagctcgacgtcg 1823612
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 242     gtcggcgtcgtcgacgacga 261
               ||||||||||||||||||||
Sbjct: 3776403 gtcggcgtcgtcgacgacga 3776422
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 410    ccagccgatccagccggcga 429
              ||||||||||||||||||||
Sbjct: 655758 ccagccgatccagccggcga 655777
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 242     gtcggcgtcgtcgacgacgaggtcgccg 269
               |||| ||||||||||||||| |||||||
Sbjct: 4734002 gtcgtcgtcgtcgacgacgacgtcgccg 4734029
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 409     cccagccgatccagccggcg 428
               ||||||||||||||||||||
Sbjct: 3034808 cccagccgatccagccggcg 3034827
to top
>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human)
          Length = 204955

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     caagattgggttcagtttct 88
              ||||||||||||||||||||
Sbjct: 141244 caagattgggttcagtttct 141225
to top
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 256     cgacgaggtcgccgttgatgagct 279
               ||||||||||| ||||||||||||
Sbjct: 1147951 cgacgaggtcgtcgttgatgagct 1147974
to top
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     gagaggttccatttctccat 117
              ||||||||||||||||||||
Sbjct: 418732 gagaggttccatttctccat 418713
to top
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
            complete sequence
          Length = 187956

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 242  gtcggcgtcgtcgacgacgaggtcgccg 269
            |||| ||||||||||||||| |||||||
Sbjct: 6410 gtcgtcgtcgtcgacgacgacgtcgccg 6437


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,251,525
Number of Sequences: 3902068
Number of extensions: 3251525
Number of successful extensions: 68773
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67289
Number of HSP's gapped (non-prelim): 1483
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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