ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet90d12 |
|---|---|
| Clone Library Name | barley_pub |
>O51I2_HUMAN (Q9H344) Olfactory receptor 51I2 (Odorant receptor HOR5'beta12)| (Olfactory receptor OR11-38) Length = 312 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 122 LHIFGFHTPIYLH*STSDVYTYPPLLLS 205 +H FG H P Y+H S+VY + P +L+ Sbjct: 261 VHRFGKHVPCYIHVLMSNVYLFVPPVLN 288
>O52A1_HUMAN (Q9UKL2) Olfactory receptor 52A1 (HPFH1OR) (Odorant receptor| HOR3'beta4) Length = 312 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +2 Query: 125 HIFGFHTPIYLH*STSDVYTYPPLLLSRFMDFALQTQI 238 H FG H P Y+H S +Y P L+ + A TQI Sbjct: 265 HRFGSHIPPYIHILFSSIYLLVPPFLNPLVYGAKTTQI 302
>FLIP1_MOUSE (Q9CS72) Filamin-A-interacting protein 1 (FILIP)| Length = 1211 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%) Frame = +3 Query: 15 KILRQE--YSLKKEKENPKTRIKMKEKVSREKAF 110 K+L QE Y +KEKEN K K+++++ + K+F Sbjct: 213 KLLEQEKAYQARKEKENAKRLNKLRDELVKLKSF 246
>FLIP1_HUMAN (Q7Z7B0) Filamin-A-interacting protein 1 (FILIP)| Length = 1213 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%) Frame = +3 Query: 15 KILRQE--YSLKKEKENPKTRIKMKEKVSREKAF 110 K+L QE Y +KEKEN K K+++++ + K+F Sbjct: 213 KLLEQEKAYQARKEKENAKRLNKLRDELVKLKSF 246
>FLIP1_RAT (Q8K4T4) Filamin-A-interacting protein 1 (FILIP)| Length = 1212 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%) Frame = +3 Query: 15 KILRQE--YSLKKEKENPKTRIKMKEKVSREKAF 110 K+L QE Y +KEKEN K K+++++ + K+F Sbjct: 212 KLLEQEKAYQARKEKENAKRLNKLRDELVKLKSF 245
>UBX5_YEAST (Q06682) UBX domain-containing protein 5| Length = 500 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%) Frame = +2 Query: 212 MDFALQTQINNQSS--NQEPIPSTG 280 M+ A++ +NN SS NQE +PSTG Sbjct: 365 MELAIKESLNNNSSKSNQEEVPSTG 389
>NH218_CAEEL (O18086) Nuclear hormone receptor family member nhr-218| Length = 400 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -1 Query: 255 FELWLLIWVWRAKSINRDRRRGGYVYTSDV 166 + LW L+W K +N D R G YT+ + Sbjct: 304 YMLWQLVWFVAEKVLNEDNLRHGEQYTNQL 333
>RW1_MOUSE (O70472) RW1 protein| Length = 1829 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +2 Query: 137 FHTPIYLH*STSDVYTYPPLLLSRFMDFAL 226 FH P+ ++ D + PP + RF+DF + Sbjct: 477 FHLPVRVYTGFLDYFVLPPKIEERFIDFGV 506
>RCEH_RHOVI (P06008) Reaction center protein H chain (Photosynthetic reaction| center H subunit) Length = 258 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = -1 Query: 258 WFELWLLIWVWRAKSINRDRRRGGY 184 W+ WL+IW + R+ RR GY Sbjct: 17 WYAQWLVIWTVVLLYLRREDRREGY 41
>CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi-2 homolog (EC| 3.6.1.-) (ATP-dependent helicase Mi-2) (dMi-2) Length = 1982 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +3 Query: 24 RQEYSLKKEKENPKTRIKMKEKVSREKAFPKFPCIYSD 137 ++E + KE PKT K KEKV +K P I D Sbjct: 1637 KEETKDPEVKEEPKTEEKEKEKVDDKKPIPPTTVIDDD 1674
>APT_CANAL (Q5ALX8) Adenine phosphoribosyltransferase (EC 2.4.2.7) (APRT)| Length = 188 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%) Frame = +3 Query: 81 KEKVSREKAFPKFP---CIYSDFTPLFTSTNL 167 KE + K FP FP ++ DF P+FT +L Sbjct: 13 KELKANLKQFPNFPKEGILFEDFLPIFTKPDL 44
>UN13D_RAT (Q9R189) Unc-13 homolog D (Munc13-4)| Length = 1088 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/39 (28%), Positives = 19/39 (48%) Frame = -1 Query: 315 CPLAWRDYHTTIPVEGIGSWFELWLLIWVWRAKSINRDR 199 C L D H + ++G WF+ + W+ R S+ +R Sbjct: 567 CQLGPSDSHEVLALDGFHRWFQSAIPSWLQRTYSVALER 605
>RW1_HUMAN (Q92545) RW1 protein (Fragment)| Length = 1805 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +2 Query: 137 FHTPIYLH*STSDVYTYPPLLLSRFMDFAL 226 FH P+ ++ D + PP + RF+DF + Sbjct: 449 FHLPVRVYTGFLDYFVLPPKIEERFIDFGV 478
>GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa| golgin) (Golgin-245) (Protein 72.1) Length = 2230 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +3 Query: 15 KILRQEYSLKKEKENPKTRIKMKEK 89 K+L QE LKKE EN + KEK Sbjct: 973 KLLDQEAKLKKELENTALELSQKEK 997
>BAZ2A_MOUSE (Q91YE5) Bromodomain adjacent to zinc finger domain 2A| (Transcription termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5) Length = 1850 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = +3 Query: 39 LKKEKENPKTRI-KMKEKVSREK 104 LK EKE KT+ K+KEKV REK Sbjct: 707 LKAEKEKMKTKQEKLKEKVKREK 729 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,574,771 Number of Sequences: 219361 Number of extensions: 832754 Number of successful extensions: 2460 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2343 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2454 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
