ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet90c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosom... 40 0.41
2gb|AC155171.7| Mus musculus BAC clone RP23-100A10 from chromosom... 40 0.41
3emb|BX901922.9| Zebrafish DNA sequence from clone DKEY-33C12 in ... 40 0.41
4ref|NM_206418.2| Drosophila melanogaster capa receptor CG14575-R... 40 0.41
5gb|AC010701.3| Drosophila melanogaster 3L BAC RP98-26P10 (Roswel... 40 0.41
6gb|AC127352.5| Mus musculus BAC clone RP23-81P4 from chromosome ... 40 0.41
7gb|AF505865.1| Drosophila melanogaster G-protein coupled recepto... 40 0.41
8emb|BX001022.9| Zebrafish DNA sequence from clone CH211-243O19, ... 40 0.41
9gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75... 40 0.41
10dbj|AP000424.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 0.41
11ref|XM_459068.1| Debaryomyces hansenii CBS767 hypothetical prote... 38 1.6
12gb|AC158347.4| Mus musculus chromosome 3, clone RP23-380F8, comp... 38 1.6
13gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 38 1.6
14emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS... 38 1.6
15gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, co... 38 1.6
16gb|AC136735.7| Mus musculus chromosome 3, clone RP23-175G2, comp... 38 1.6
17emb|X60106.1|ECCSVR E.coli csvR gene 38 1.6
18emb|CR942285.1| Escherichia coli plasmid pCoo 38 1.6
19gb|U88180.1| Caenorhabditis elegans cosmid T27A3, complete sequence 36 6.4
20emb|CR848726.6| Zebrafish DNA sequence from clone CH211-244M8 in... 36 6.4
21gb|AC131729.3| Mus musculus BAC clone RP23-125B15 from 5, comple... 36 6.4
22emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 36 6.4
23gb|AC141436.17| Medicago truncatula clone mth2-31k19, complete s... 36 6.4
24gb|AC139706.8| Medicago truncatula clone mth2-28n21, complete se... 36 6.4
25emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 ... 36 6.4
26emb|AL020991.1|HS884M20 Human DNA sequence from clone RP5-884M20... 36 6.4
27emb|AL161595.2|ATCHRIV91 Arabidopsis thaliana DNA chromosome 4, ... 36 6.4
28emb|AL078620.2|ATF23K16 Arabidopsis thaliana DNA chromosome 4, B... 36 6.4
29emb|AL035475.7|PFMAL4P2 Plasmodium falciparum MAL4P2 36 6.4
30emb|AL807239.5| Zebrafish DNA sequence from clone CH211-231H1 in... 36 6.4
31emb|CR388021.9| Zebrafish DNA sequence from clone CH211-189L17 i... 36 6.4
32gb|AC011378.7| Homo sapiens chromosome 5 clone CTB-128B4, comple... 36 6.4
33gb|AC021678.13| Homo sapiens chromosome 8, clone RP11-380I10, co... 36 6.4
34gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342... 36 6.4
35dbj|AK143525.1| Mus musculus 12 days embryo whole body cDNA, RIK... 36 6.4
36gb|AC073882.4| Mus musculus strain 129/SvES Cell Line CJ7 chromo... 36 6.4
37gb|AC068952.10| Mus musculus strain 129/Sv ES cell line CJ7 chro... 36 6.4
38gb|AC068903.11| Mus musculus strain 129/Sv ES cell line CJ7 chro... 36 6.4
39gb|AC084261.5| Homo sapiens chromosome 8, clone RP3-335L1, compl... 36 6.4
40gb|AF271480.1|AF271480 Salmo salar microsatellite Hae018 sequence 36 6.4
41gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-4... 36 6.4
42gb|AF316642.1|AF316642 Streptococcus pneumoniae serotype 18C cap... 36 6.4
43dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.4
44dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.4
45dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.4
46emb|BX511226.5| Zebrafish DNA sequence from clone DKEY-41K7 in l... 36 6.4
47dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.4
48emb|BX649317.5| Mouse DNA sequence from clone RP23-415G15 on chr... 36 6.4
49dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 36 6.4
50emb|AL672282.9| Mouse DNA sequence from clone RP23-448K19 on chr... 36 6.4
51dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic D... 36 6.4
52emb|Z83821.1|HS296K21 Human DNA sequence from clone RP1-296K21 o... 36 6.4
53emb|BX276097.12| Zebrafish DNA sequence from clone DKEY-97C6 in ... 36 6.4
54emb|AL929032.10| Zebrafish DNA sequence from clone DKEY-4C23 in ... 36 6.4
55emb|CR931673.1| Streptococcus pneumoniae strain 4593/40 (serotyp... 36 6.4
56emb|CR931672.1| Streptococcus pneumoniae strain 1033/41 (serotyp... 36 6.4
57emb|BX088557.2| Mouse DNA sequence from clone RP23-173C23 on chr... 36 6.4
58gb|AY884244.1| Homo sapiens APEX nuclease (apurinic/apyrimidinic... 36 6.4
59gb|AC159006.2| Mus musculus BAC clone RP23-36P21 from chromosome... 36 6.4
60gb|M72148.1|MVOPSFLA M.voltae (strain PS) flagellin genes flaA, ... 36 6.4 
>gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosome 7, complete sequence
          Length = 192433

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      aggacccattataattttta 24
              ||||||||||||||||||||
Sbjct: 167083 aggacccattataattttta 167102
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>gb|AC155171.7| Mus musculus BAC clone RP23-100A10 from chromosome 7, complete sequence
          Length = 193027

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      aggacccattataattttta 24
              ||||||||||||||||||||
Sbjct: 132182 aggacccattataattttta 132163
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>emb|BX901922.9| Zebrafish DNA sequence from clone DKEY-33C12 in linkage group 13,
             complete sequence
          Length = 242350

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ttatggatagcgaaattttt 41
             ||||||||||||||||||||
Sbjct: 34217 ttatggatagcgaaattttt 34236
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>ref|NM_206418.2| Drosophila melanogaster capa receptor CG14575-RB (capaR), mRNA
          Length = 2004

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  aatttttatggatagcgaaa 36
           ||||||||||||||||||||
Sbjct: 264 aatttttatggatagcgaaa 245
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>gb|AC010701.3| Drosophila melanogaster 3L BAC RP98-26P10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 174920

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     aatttttatggatagcgaaa 36
              ||||||||||||||||||||
Sbjct: 108331 aatttttatggatagcgaaa 108312
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>gb|AC127352.5| Mus musculus BAC clone RP23-81P4 from chromosome 7, complete sequence
          Length = 196031

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aggacccattataattttta 24
             ||||||||||||||||||||
Sbjct: 92159 aggacccattataattttta 92140
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>gb|AF505865.1| Drosophila melanogaster G-protein coupled receptor mRNA, complete
           cds
          Length = 2004

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  aatttttatggatagcgaaa 36
           ||||||||||||||||||||
Sbjct: 264 aatttttatggatagcgaaa 245
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>emb|BX001022.9| Zebrafish DNA sequence from clone CH211-243O19, complete sequence
          Length = 160804

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ttatggatagcgaaattttt 41
              ||||||||||||||||||||
Sbjct: 112072 ttatggatagcgaaattttt 112091
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>gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75 of 83 of the complete
              sequence
          Length = 314904

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     aatttttatggatagcgaaa 36
              ||||||||||||||||||||
Sbjct: 296453 aatttttatggatagcgaaa 296472
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>dbj|AP000424.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1615E4
          Length = 177274

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     cattataatttttatggata 30
              ||||||||||||||||||||
Sbjct: 154839 cattataatttttatggata 154820
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>ref|XM_459068.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D14872g)
           partial mRNA
          Length = 1434

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 12  attataatttttatggata 30
           |||||||||||||||||||
Sbjct: 288 attataatttttatggata 270
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>gb|AC158347.4| Mus musculus chromosome 3, clone RP23-380F8, complete sequence
          Length = 193489

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    ccattataatttttatgga 28
             |||||||||||||||||||
Sbjct: 17481 ccattataatttttatgga 17463
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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 20      ttttatggatagcgaaattttta 42
               |||| ||||||||||||||||||
Sbjct: 1402071 ttttttggatagcgaaattttta 1402049
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>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces
               hansenii
          Length = 1602771

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 12      attataatttttatggata 30
               |||||||||||||||||||
Sbjct: 1141942 attataatttttatggata 1141924
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>gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, complete sequence
          Length = 159942

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    ttataatttttatggatag 31
             |||||||||||||||||||
Sbjct: 78837 ttataatttttatggatag 78855
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>gb|AC136735.7| Mus musculus chromosome 3, clone RP23-175G2, complete sequence
          Length = 182455

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    ccattataatttttatgga 28
             |||||||||||||||||||
Sbjct: 79411 ccattataatttttatgga 79429
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>emb|X60106.1|ECCSVR E.coli csvR gene
          Length = 4689

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 16   taatttttatggatagcga 34
            |||||||||||||||||||
Sbjct: 1722 taatttttatggatagcga 1740
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>emb|CR942285.1| Escherichia coli plasmid pCoo
          Length = 98396

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 16    taatttttatggatagcga 34
             |||||||||||||||||||
Sbjct: 66773 taatttttatggatagcga 66791
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>gb|U88180.1| Caenorhabditis elegans cosmid T27A3, complete sequence
          Length = 34995

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   ttataatttttatggata 30
            ||||||||||||||||||
Sbjct: 7364 ttataatttttatggata 7347
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>emb|CR848726.6| Zebrafish DNA sequence from clone CH211-244M8 in linkage group 2,
             complete sequence
          Length = 155408

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 13    ttataatttttatggata 30
             ||||||||||||||||||
Sbjct: 42641 ttataatttttatggata 42624
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>gb|AC131729.3| Mus musculus BAC clone RP23-125B15 from 5, complete sequence
          Length = 209715

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 12     attataatttttatggat 29
              ||||||||||||||||||
Sbjct: 132686 attataatttttatggat 132703
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>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16,
             complete sequence
          Length = 163738

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    ccattataatttttatgg 27
             ||||||||||||||||||
Sbjct: 61255 ccattataatttttatgg 61238
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>gb|AC141436.17| Medicago truncatula clone mth2-31k19, complete sequence
          Length = 112268

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    ttataatttttatggata 30
             ||||||||||||||||||
Sbjct: 72309 ttataatttttatggata 72326
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>gb|AC139706.8| Medicago truncatula clone mth2-28n21, complete sequence
          Length = 106244

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 13    ttataatttttatggata 30
             ||||||||||||||||||
Sbjct: 33946 ttataatttttatggata 33929
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>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the
             ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a
             eukaryotic translation initiation factor 3 subunit 6
             interacting protein (EIF3S6IP) pseudogene, the 3' end of
             the ZNF11B gene for zinc finger protein 11b (KOX 2), a
             novel gene (FLJ23327) and two CpG Islands, complete
             sequence
          Length = 146328

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 13    ttataatttttatggata 30
             ||||||||||||||||||
Sbjct: 37042 ttataatttttatggata 37025
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>emb|AL020991.1|HS884M20 Human DNA sequence from clone RP5-884M20 on chromosome Xp11.21 Contains
             the ALAS2 gene for aminolevulinate, delta-, synthase 2
             (sideroblastic/hypochromic anemia), the APEX2 gene for
             APEX nuclease (apurinic/apyrimidinic endonuclease) 2, the
             5' end of the PFKFB1 gene for
             6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 and
             a CpG island, complete sequence
          Length = 114173

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    tataatttttatggatag 31
             ||||||||||||||||||
Sbjct: 48894 tataatttttatggatag 48877
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>emb|AL161595.2|ATCHRIV91 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 91
          Length = 198151

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    tataatttttatggatag 31
             ||||||||||||||||||
Sbjct: 50434 tataatttttatggatag 50417
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>emb|AL078620.2|ATF23K16 Arabidopsis thaliana DNA chromosome 4, BAC clone F23K16 (ESSA project)
          Length = 129047

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    tataatttttatggatag 31
             ||||||||||||||||||
Sbjct: 25220 tataatttttatggatag 25203
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>emb|AL035475.7|PFMAL4P2 Plasmodium falciparum MAL4P2
          Length = 234081

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 19     tttttatggatagcgaaa 36
              ||||||||||||||||||
Sbjct: 185932 tttttatggatagcgaaa 185949
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>emb|AL807239.5| Zebrafish DNA sequence from clone CH211-231H1 in linkage group 14
              Contains the 5' part of a novel gene similar to human,
              rodent and Oreochromis mossambicus GRIA3 (ionotropic
              glutamate receptor AMPA3) and five CpG islands, complete
              sequence
          Length = 210702

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 11     cattataatttttatgga 28
              ||||||||||||||||||
Sbjct: 192368 cattataatttttatgga 192351
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>emb|CR388021.9| Zebrafish DNA sequence from clone CH211-189L17 in linkage group 5,
             complete sequence
          Length = 150805

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 22    ttatggatagcgaaattt 39
             ||||||||||||||||||
Sbjct: 79354 ttatggatagcgaaattt 79371
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>gb|AC011378.7| Homo sapiens chromosome 5 clone CTB-128B4, complete sequence
          Length = 112357

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    attataatttttatggat 29
             ||||||||||||||||||
Sbjct: 71101 attataatttttatggat 71118
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>gb|AC021678.13| Homo sapiens chromosome 8, clone RP11-380I10, complete sequence
          Length = 181731

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    ttataatttttatggata 30
             ||||||||||||||||||
Sbjct: 99945 ttataatttttatggata 99962
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>gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342N3, complete sequence
          Length = 210913

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 8     acccattataatttttat 25
             ||||||||||||||||||
Sbjct: 96484 acccattataatttttat 96467
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>dbj|AK143525.1| Mus musculus 12 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:E970012G11 product:hypothetical
            protein, full insert sequence
          Length = 3663

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 12   attataatttttatggat 29
            ||||||||||||||||||
Sbjct: 2551 attataatttttatggat 2534
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>gb|AC073882.4| Mus musculus strain 129/SvES Cell Line CJ7 chromosome 2 clone
             ct7-305f12, complete sequence
          Length = 130734

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 13    ttataatttttatggata 30
             ||||||||||||||||||
Sbjct: 82684 ttataatttttatggata 82667
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>gb|AC068952.10| Mus musculus strain 129/Sv ES cell line CJ7 chromosome 2 clone
             ct7-254f1, complete sequence
          Length = 95292

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    ttataatttttatggata 30
             ||||||||||||||||||
Sbjct: 59045 ttataatttttatggata 59062
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>gb|AC068903.11| Mus musculus strain 129/Sv ES cell line CJ7 chromosome 2 clone
             ct7-196d19, complete sequence
          Length = 82033

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    ttataatttttatggata 30
             ||||||||||||||||||
Sbjct: 44267 ttataatttttatggata 44284
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>gb|AC084261.5| Homo sapiens chromosome 8, clone RP3-335L1, complete sequence
          Length = 159212

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 13     ttataatttttatggata 30
              ||||||||||||||||||
Sbjct: 142499 ttataatttttatggata 142482
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>gb|AF271480.1|AF271480 Salmo salar microsatellite Hae018 sequence
          Length = 495

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  tatggatagcgaaatttt 40
           ||||||||||||||||||
Sbjct: 252 tatggatagcgaaatttt 269
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>gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-44o11, complete
             sequence
          Length = 126437

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 19    tttttatggatagcgaaatttt 40
             |||||||||||| |||||||||
Sbjct: 70050 tttttatggataacgaaatttt 70029
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>gb|AF316642.1|AF316642 Streptococcus pneumoniae serotype 18C capsular polysaccharide gene
            cluster, complete sequence
          Length = 21648

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 10   ccattataatttttatgg 27
            ||||||||||||||||||
Sbjct: 3266 ccattataatttttatgg 3249
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 10       ccattataatttttatgg 27
                ||||||||||||||||||
Sbjct: 21247781 ccattataatttttatgg 21247764
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 10      ccattataatttttatgg 27
               ||||||||||||||||||
Sbjct: 6757693 ccattataatttttatgg 6757676



 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     ccattataatttttatgg 27
              ||||||||||||||||||
Sbjct: 680979 ccattataatttttatgg 680996
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 10      ccattataatttttatgg 27
               ||||||||||||||||||
Sbjct: 9643059 ccattataatttttatgg 9643042
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>emb|BX511226.5| Zebrafish DNA sequence from clone DKEY-41K7 in linkage group 1,
             complete sequence
          Length = 252757

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 11    cattataatttttatgga 28
             ||||||||||||||||||
Sbjct: 46313 cattataatttttatgga 46296
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>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0038F12
          Length = 190014

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    ccattataatttttatgg 27
             ||||||||||||||||||
Sbjct: 81062 ccattataatttttatgg 81045
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>emb|BX649317.5| Mouse DNA sequence from clone RP23-415G15 on chromosome 2, complete
             sequence
          Length = 199584

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    ttataatttttatggata 30
             ||||||||||||||||||
Sbjct: 55191 ttataatttttatggata 55208
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>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1131G07
          Length = 133992

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    ccattataatttttatgg 27
             ||||||||||||||||||
Sbjct: 78746 ccattataatttttatgg 78729
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>emb|AL672282.9| Mouse DNA sequence from clone RP23-448K19 on chromosome X, complete
             sequence
          Length = 167107

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    attataatttttatggat 29
             ||||||||||||||||||
Sbjct: 83135 attataatttttatggat 83152
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>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1399_H05
          Length = 147670

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    ccattataatttttatgg 27
             ||||||||||||||||||
Sbjct: 37874 ccattataatttttatgg 37891
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>emb|Z83821.1|HS296K21 Human DNA sequence from clone RP1-296K21 on chromosome Xq13, complete
             sequence
          Length = 111994

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    tataatttttatggatag 31
             ||||||||||||||||||
Sbjct: 47391 tataatttttatggatag 47374
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>emb|BX276097.12| Zebrafish DNA sequence from clone DKEY-97C6 in linkage group 20,
             complete sequence
          Length = 128871

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 22    ttatggatagcgaaattt 39
             ||||||||||||||||||
Sbjct: 82178 ttatggatagcgaaattt 82161
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>emb|AL929032.10| Zebrafish DNA sequence from clone DKEY-4C23 in linkage group 22, complete
              sequence
          Length = 236775

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 10     ccattataatttttatgg 27
              ||||||||||||||||||
Sbjct: 134055 ccattataatttttatgg 134072
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>emb|CR931673.1| Streptococcus pneumoniae strain 4593/40 (serotype 18c)
          Length = 21819

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 10   ccattataatttttatgg 27
            ||||||||||||||||||
Sbjct: 3367 ccattataatttttatgg 3350
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>emb|CR931672.1| Streptococcus pneumoniae strain 1033/41 (serotype 18b)
          Length = 21819

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 10   ccattataatttttatgg 27
            ||||||||||||||||||
Sbjct: 3367 ccattataatttttatgg 3350
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>emb|BX088557.2| Mouse DNA sequence from clone RP23-173C23 on chromosome 2, complete
             sequence
          Length = 80320

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    ttataatttttatggata 30
             ||||||||||||||||||
Sbjct: 17300 ttataatttttatggata 17317
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>gb|AY884244.1| Homo sapiens APEX nuclease (apurinic/apyrimidinic endonuclease) 2
            (APEX2) gene, complete cds
          Length = 11390

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 14   tataatttttatggatag 31
            ||||||||||||||||||
Sbjct: 3448 tataatttttatggatag 3465
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>gb|AC159006.2| Mus musculus BAC clone RP23-36P21 from chromosome 14, complete sequence
          Length = 245591

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    atttttatggatagcgaa 35
             ||||||||||||||||||
Sbjct: 95901 atttttatggatagcgaa 95884
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>gb|M72148.1|MVOPSFLA M.voltae (strain PS) flagellin genes flaA, flaB1, flaB2 and flaB3,
            complete cds
          Length = 4202

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 12   attataatttttatggat 29
            ||||||||||||||||||
Sbjct: 1469 attataatttttatggat 1486


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 681,592
Number of Sequences: 3902068
Number of extensions: 681592
Number of successful extensions: 186802
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 186275
Number of HSP's gapped (non-prelim): 527
length of query: 49
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 29
effective length of database: 17,155,003,908
effective search space: 497495113332
effective search space used: 497495113332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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