ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet90b11 |
|---|---|
| Clone Library Name | barley_pub |
>YIP1_YEAST (P53039) Protein YIP1 (YPT-interacting protein 1)| Length = 248 Score = 38.9 bits (89), Expect = 0.003 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Frame = -3 Query: 366 FFQSLSLLGYCLFPLDVGALICLLKD-NXXXXXXXXXXXLAWSSWAAYPFMSAAVNPRRK 190 FF + S+LGYC PL +L+ + N + WS+W + F+++ + + Sbjct: 167 FFNTASILGYCFLPLCFLSLLGIFHGLNNTTGYVVSVLFVIWSTWTSSGFLNSLLQLQNA 226 Query: 189 ALAI-YPVFLMYISVGFLIIAI 127 L I YP+ + Y ++I + Sbjct: 227 RLLIAYPLLIFYSVFALMVIFV 248
>MRAY_ANAVT (Q3MDP5) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 367 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +2 Query: 128 MAIMRNPTEMYMRNTGYMARAFLLGFTAALMNG*AAQELHASV-TVTTMIFSMTLSFSKQ 304 +A RNP ++M +TG +A L A L N A + + + V T+ +S+ K Sbjct: 256 LAHNRNPARVFMGDTGSLALGGALAAVALLTNSLVALFILSGIFFVETLSVMAQVSYYKA 315 Query: 305 IRAPTSRGNK 334 + P +G + Sbjct: 316 TKGPDGKGKR 325
>MRAY_ANASP (Q8YP83) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 369 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +2 Query: 128 MAIMRNPTEMYMRNTGYMARAFLLGFTAALMNG*AAQELHASV-TVTTMIFSMTLSFSKQ 304 +A RNP ++M +TG +A L A L N A + + + V T+ +S+ K Sbjct: 256 LAHNRNPARVFMGDTGSLALGGALAAVALLTNSLVALFILSGIFFVETLSVMAQVSYYKA 315 Query: 305 IRAPTSRGNK 334 + P +G + Sbjct: 316 TKGPDGKGKR 325
>ZN674_HUMAN (Q2M3X9) Zinc finger protein 674| Length = 581 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 3/82 (3%) Frame = -2 Query: 361 PKPQSPWVLFVSSGCWSSNLLAE---GQCHTKDHRRDSHTGVELLGCLPIHERCCEPKEK 191 P P W + + + G+ H H+R HTG + C C Sbjct: 370 PSPTKHWRTHTKENIYECSKCGKSFRGKSHLSVHQR-IHTGEKPYEC-----SICGKTFS 423 Query: 190 GSGHISCIPHVHLGRVPHNCHR 125 G H+S H G P+ C R Sbjct: 424 GKSHLSVHHRTHTGEKPYECRR 445
>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)| Length = 2570 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -2 Query: 211 CCEPKEKGSGHISCIPHVHLGRVPHNCHRLAPGVRQCS 98 C E GH C PH NC ++APG R C+ Sbjct: 1453 CSEVDPCAHGHGGCSPHA-------NCTKVAPGQRTCT 1483
>ZN606_HUMAN (Q8WXB4) Zinc finger protein 606 (Zinc finger protein 328)| Length = 792 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/64 (28%), Positives = 24/64 (37%) Frame = -2 Query: 286 CHTKDHRRDSHTGVELLGCLPIHERCCEPKEKGSGHISCIPHVHLGRVPHNCHRLAPGVR 107 CH HRR HTG + C CE S H+ H G P+ C+ Sbjct: 665 CHLVAHRR-IHTGEKPYKC-----NQCERSFNCSSHLIAHRRTHTGEKPYRCNECGKAFN 718 Query: 106 QCSN 95 + S+ Sbjct: 719 ESSS 722 Score = 28.1 bits (61), Expect = 5.4 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 20/93 (21%) Frame = -2 Query: 316 WSSNLLAEGQCHTKD--------------------HRRDSHTGVELLGCLPIHERCCEPK 197 WSS+L+A + HT + H R +H+G + C C Sbjct: 523 WSSHLIAHMRMHTGEKPFKCDECEKAFRDYSALSKHER-THSGAKPYKCTE-----CGKS 576 Query: 196 EKGSGHISCIPHVHLGRVPHNCHRLAPGVRQCS 98 S H+ H G P+NC R+ S Sbjct: 577 FSWSSHLIAHQRTHTGEKPYNCQECGKAFRERS 609
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -2 Query: 211 CCEPKEKGSGHISCIPHVHLGRVPHNCHRLAPGVRQCS 98 C E SGH C P+ NC ++APG R C+ Sbjct: 1454 CSEVDPCASGHGGCSPYA-------NCTKVAPGQRTCT 1484
>INVO_RAT (P48998) Involucrin| Length = 568 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 9/60 (15%) Frame = -2 Query: 289 QCHTKDHRRDSHTGVELLGCLPIHERCCEPK---------EKGSGHISCIPHVHLGRVPH 137 Q H + H + H G + H+ CEP+ E+ SC P +HLG+ H Sbjct: 277 QQHQESHEPELHLGKQQ------HQESCEPELHLGEQQHQEQQQHQESCEPELHLGKQQH 330
>GLGB_SYNPX (Q7U646) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 775 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = +1 Query: 175 IYGQSLSPWVHSSAHE-WVGSPGAPR 249 +Y L W+H+SA E W+ G+PR Sbjct: 249 VYEMHLGSWIHASAEEPWIQPDGSPR 274
>YIPF5_XENTR (Q66KA5) Protein YIPF5 (YIP1 domain family member 5)| Length = 256 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = -3 Query: 351 SLLGYCLFPLDV-GALICLLKDNXXXXXXXXXXXLAWSSWAAYP-FMSAAVNPRRKALAI 178 S+LGYCL P+ + + + + W S++A F+SA ++ L Sbjct: 181 SVLGYCLLPMIILSSFAVIFSLQGILGIVLAALIIGWCSFSASKIFISALAMDGQQVLVA 240 Query: 177 YPVFLMY 157 YP L+Y Sbjct: 241 YPCALLY 247
>YL107_MIMIV (Q5UPH7) Putative BTB/POZ domain-containing protein L107| Length = 501 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +2 Query: 20 GSRDKVYSSLYTLRRYNGENFNISGVTTLPH 112 GS+ +VY + + Y E+FN+S +T + H Sbjct: 403 GSKIRVYDWVNNIFTYENESFNVSDITYIDH 433
>ZN610_HUMAN (Q8N9Z0) Zinc finger protein 610| Length = 462 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/62 (25%), Positives = 26/62 (41%) Frame = -2 Query: 283 HTKDHRRDSHTGVELLGCLPIHERCCEPKEKGSGHISCIPHVHLGRVPHNCHRLAPGVRQ 104 H +H R HTG + C C+ + +++ +H G PH C+ R+ Sbjct: 246 HLVEHWR-IHTGQKPYKCSE-----CDKVFNRNSNLARHQRIHTGEKPHKCNECGKAFRE 299 Query: 103 CS 98 CS Sbjct: 300 CS 301
>SERC_SHEON (Q8EEH2) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 367 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -2 Query: 337 LFVSSGCWSSNLLAEGQCHTKDHRRDSHTGVELLGCL 227 L++ SG WSS LAE Q D + DS VE CL Sbjct: 97 LYLVSGQWSSAALAEAQKLAGDAQIDSLNIVEKHNCL 133
>PGCA_BOVIN (P13608) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2364 Score = 28.1 bits (61), Expect = 5.4 Identities = 24/67 (35%), Positives = 31/67 (46%) Frame = -2 Query: 364 LPKPQSPWVLFVSSGCWSSNLLAEGQCHTKDHRRDSHTGVELLGCLPIHERCCEPKEKGS 185 LP + P V +SG ++L G+ DH S +GVE LG LP E E G Sbjct: 1270 LPSGEGPEVS--ASGVEDLSVLPSGE----DHLEISASGVEDLGVLPSGEDHLEISASGV 1323 Query: 184 GHISCIP 164 IS +P Sbjct: 1324 EDISRLP 1330
>YIPF5_XENLA (Q7SXS2) Protein YIPF5 (YIP1 domain family member 5)| Length = 256 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Frame = -3 Query: 351 SLLGYCLFPLDV-GALICLLKDNXXXXXXXXXXXLAWSSWAAYP-FMSAAVNPRRKALAI 178 S+LGYCL P+ + + + W S++A F+SA ++ L Sbjct: 181 SVLGYCLLPMIILSTFAVIFSLQGILGIVLAALIIGWCSFSASKIFISALAMDGQQLLVA 240 Query: 177 YPVFLMY 157 YP L+Y Sbjct: 241 YPCALLY 247
>ZN501_PONPY (Q5RF70) Zinc finger protein 501| Length = 262 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/59 (28%), Positives = 24/59 (40%) Frame = -2 Query: 274 DHRRDSHTGVELLGCLPIHERCCEPKEKGSGHISCIPHVHLGRVPHNCHRLAPGVRQCS 98 +H R +HTG +L C CE + H+S +H G P+ C R S Sbjct: 198 EHER-THTGEKLYKCSE-----CEKTFRKQAHLSEHYRIHTGEKPYECFGCGKSFRHSS 250
>ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SCAN| domain-containing protein 10) Length = 725 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Frame = -2 Query: 292 GQCHTKDHRRDSHTGVELLGCLPIHERCCEPKEKGSG-----HISCIPHVHLGRVPHNCH 128 GQ + SHTG E+ C E G G H++ +H G PH C Sbjct: 561 GQTQDLARHQRSHTG----------EKPCRCSECGEGFSQSAHLARHQRIHTGEKPHACD 610 Query: 127 RLAPGVRQCSN 95 R SN Sbjct: 611 TCGHRFRNSSN 621
>ZN558_HUMAN (Q96NG5) Zinc finger protein 558| Length = 402 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Frame = -2 Query: 286 CHTKDHRRDSHTGVELLGCLPIHERCCEPKEKGSGHISCIPH--VHLGRVPHNCHRLAPG 113 C+ K H+R HTG H C + + S S H +H G P+ CH Sbjct: 249 CNLKSHKR-IHTGEN-------HHECNQCGKAFSTRSSLTGHNSIHTGEKPYECHDCGKT 300 Query: 112 VRQCS 98 R+ S Sbjct: 301 FRKSS 305
>YIPF5_RAT (Q5XID0) Protein YIPF5 (YIP1 domain family member 5)| (YPT-interacting protein 1 A) Length = 257 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = -3 Query: 351 SLLGYCLFPLD-VGALICLLKDNXXXXXXXXXXXLAWSSWAAYP-FMSAAVNPRRKALAI 178 S+LGYCL P+ + + + + W S++A F+SA ++ L Sbjct: 182 SVLGYCLLPMILLSSFAVVFSLQGMVGILLTATIIGWCSFSASKIFISALAMDGQQLLVA 241 Query: 177 YPVFLMY 157 YP L+Y Sbjct: 242 YPCALLY 248
>YIPF5_PONPY (Q5R6W5) Protein YIPF5 (YIP1 domain family member 5)| Length = 257 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = -3 Query: 351 SLLGYCLFPLD-VGALICLLKDNXXXXXXXXXXXLAWSSWAAYP-FMSAAVNPRRKALAI 178 S+LGYCL P+ + + + + W S++A F+SA ++ L Sbjct: 182 SVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVA 241 Query: 177 YPVFLMY 157 YP L+Y Sbjct: 242 YPCALLY 248
>YIPF5_MOUSE (Q9EQQ2) Protein YIPF5 (YIP1 domain family member 5)| (YPT-interacting protein 1 A) Length = 257 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = -3 Query: 351 SLLGYCLFPLD-VGALICLLKDNXXXXXXXXXXXLAWSSWAAYP-FMSAAVNPRRKALAI 178 S+LGYCL P+ + + + + W S++A F+SA ++ L Sbjct: 182 SVLGYCLLPMILLSSFAVVFSLQGMVGILLTATIIGWCSFSASKIFISALAMDGQQLLVA 241 Query: 177 YPVFLMY 157 YP L+Y Sbjct: 242 YPCALLY 248
>YIPF5_MACFA (Q4R5M4) Protein YIPF5 (YIP1 domain family member 5)| Length = 257 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = -3 Query: 351 SLLGYCLFPLD-VGALICLLKDNXXXXXXXXXXXLAWSSWAAYP-FMSAAVNPRRKALAI 178 S+LGYCL P+ + + + + W S++A F+SA ++ L Sbjct: 182 SVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVA 241 Query: 177 YPVFLMY 157 YP L+Y Sbjct: 242 YPCALLY 248
>YIPF5_HUMAN (Q969M3) Protein YIPF5 (YIP1 domain family member 5)| (YPT-interacting protein 1 A) (Five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 5) (Smooth muscle cell-associated protein 5) (SMAP-5) Length = 257 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = -3 Query: 351 SLLGYCLFPLD-VGALICLLKDNXXXXXXXXXXXLAWSSWAAYP-FMSAAVNPRRKALAI 178 S+LGYCL P+ + + + + W S++A F+SA ++ L Sbjct: 182 SVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVA 241 Query: 177 YPVFLMY 157 YP L+Y Sbjct: 242 YPCALLY 248
>YIPF5_BOVIN (Q5E9E8) Protein YIPF5 (YIP1 domain family member 5)| Length = 257 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = -3 Query: 351 SLLGYCLFPLD-VGALICLLKDNXXXXXXXXXXXLAWSSWAAYP-FMSAAVNPRRKALAI 178 S+LGYCL P+ + + + + W S++A F+SA ++ L Sbjct: 182 SVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVA 241 Query: 177 YPVFLMY 157 YP L+Y Sbjct: 242 YPCALLY 248
>ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)| Length = 1687 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/49 (28%), Positives = 18/49 (36%) Frame = -2 Query: 274 DHRRDSHTGVELLGCLPIHERCCEPKEKGSGHISCIPHVHLGRVPHNCH 128 DH H G L C C K I+ +H G P++CH Sbjct: 1440 DHHVKGHGGTRLYKCTD-----CAYSTKNRQKITWHSRIHTGEKPYHCH 1483 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,428,365 Number of Sequences: 219361 Number of extensions: 1224318 Number of successful extensions: 4356 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4253 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4350 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
