ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet90b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAMA_DROME (Q00174) Laminin alpha chain precursor 31 0.77
2HYFC_ECOLI (P77858) Hydrogenase-4 component C (EC 1.-.-.-) 29 3.8

>LAMA_DROME (Q00174) Laminin alpha chain precursor|
          Length = 3712

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +3

Query: 24   YYSTGSVLLNKPHTHAL*LPKSKPY*SIKQA*DPCTKPTTYNTTVSTAASTT 179
            YY +G   +  P ++A  LP  KP   I+    P T PTT  TT +T  STT
Sbjct: 3238 YYPSGDNEVESPWSNADTLPPLKP--DIESTLPPTT-PTTTTTTTTTTTSTT 3286



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>HYFC_ECOLI (P77858) Hydrogenase-4 component C (EC 1.-.-.-)|
          Length = 315

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +2

Query: 26  LFNWFGLAQQTTHACSLTSKVQTLLK 103
           LF  FG AQ+ + AC LTS V TLLK
Sbjct: 245 LFLPFGRAQELSLACLLTSLVVTLLK 270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,515,297
Number of Sequences: 219361
Number of extensions: 341754
Number of successful extensions: 875
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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