ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet90a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC167362.2| Mus musculus BAC clone RP23-74P17 from chromosome... 46 0.093
2gb|AC121989.2| Mus musculus BAC clone RP24-298C8 from 7, complet... 46 0.093
3emb|AJ296303.1|MMU296303 Mus musculus tub gene for tubby protein... 46 0.093
4dbj|AK099812.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
5ref|NM_195154.1| Oryza sativa (japonica cultivar-group) putative... 40 5.7
6gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.7
7gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare str... 40 5.7
8emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete... 40 5.7
9gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, co... 40 5.7
10gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.7
11emb|BX510939.5| Zebrafish DNA sequence from clone CH211-78C9 in ... 40 5.7
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
13emb|AL670943.14| Mouse DNA sequence from clone RP23-233G6 on chr... 40 5.7
14gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7 
>gb|AC167362.2| Mus musculus BAC clone RP23-74P17 from chromosome 7, complete sequence
          Length = 215537

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 368   agttcctctcatgaatcattcgc 390
             |||||||||||||||||||||||
Sbjct: 50096 agttcctctcatgaatcattcgc 50074
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>gb|AC121989.2| Mus musculus BAC clone RP24-298C8 from 7, complete sequence
          Length = 175515

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 368    agttcctctcatgaatcattcgc 390
              |||||||||||||||||||||||
Sbjct: 137173 agttcctctcatgaatcattcgc 137151
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>emb|AJ296303.1|MMU296303 Mus musculus tub gene for tubby protein, exons 1-12
          Length = 163455

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 368   agttcctctcatgaatcattcgc 390
             |||||||||||||||||||||||
Sbjct: 59191 agttcctctcatgaatcattcgc 59169
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>dbj|AK099812.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099F18, full
           insert sequence
          Length = 1505

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 4   gttgcagtggtgggacaggag 24
           |||||||||||||||||||||
Sbjct: 573 gttgcagtggtgggacaggag 593
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>ref|NM_195154.1| Oryza sativa (japonica cultivar-group) putative transposable element
            (OSJNBa0047G15.6), mRNA
          Length = 2637

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 148  atctgaaattccaagcccaa 167
            ||||||||||||||||||||
Sbjct: 2364 atctgaaattccaagcccaa 2383
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>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNAa0044A10, from chromosome 10, complete sequence
          Length = 173374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     attatggtagtttgttgatt 60
              ||||||||||||||||||||
Sbjct: 125732 attatggtagtttgttgatt 125713



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     attatggtagtttgttgatt 60
              ||||||||||||||||||||
Sbjct: 118565 attatggtagtttgttgatt 118546
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>gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0044I14, from Chromosome 10, complete sequence
          Length = 63167

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    attatggtagtttgttgatt 60
             ||||||||||||||||||||
Sbjct: 57977 attatggtagtttgttgatt 57996



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    attatggtagtttgttgatt 60
             ||||||||||||||||||||
Sbjct: 50810 attatggtagtttgttgatt 50829
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>emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete sequence
          Length = 151259

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     tgttgatttgaggaaccctatttt 76
              |||| |||||||||||||||||||
Sbjct: 147627 tgtttatttgaggaaccctatttt 147650
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>gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, complete sequence
          Length = 196331

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    atttgaggaaccctattttc 77
             ||||||||||||||||||||
Sbjct: 74363 atttgaggaaccctattttc 74344
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>gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0047G15, from chromosome 10, complete sequence
          Length = 166474

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   atctgaaattccaagcccaa 167
             ||||||||||||||||||||
Sbjct: 18284 atctgaaattccaagcccaa 18265
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>emb|BX510939.5| Zebrafish DNA sequence from clone CH211-78C9 in linkage group 16,
              complete sequence
          Length = 163843

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 315    gctccatatgtacatgacagcatc 338
              ||||||||| ||||||||||||||
Sbjct: 118118 gctccatatttacatgacagcatc 118141
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 41       attatggtagtttgttgatt 60
                ||||||||||||||||||||
Sbjct: 13279483 attatggtagtttgttgatt 13279464



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 41       attatggtagtttgttgatt 60
                ||||||||||||||||||||
Sbjct: 13272316 attatggtagtttgttgatt 13272297



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 148     atctgaaattccaagcccaa 167
               ||||||||||||||||||||
Sbjct: 5012983 atctgaaattccaagcccaa 5012964
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>emb|AL670943.14| Mouse DNA sequence from clone RP23-233G6 on chromosome X, complete
             sequence
          Length = 197148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   tttcctcttatccctttctg 261
             ||||||||||||||||||||
Sbjct: 44929 tttcctcttatccctttctg 44948
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 41       attatggtagtttgttgatt 60
                ||||||||||||||||||||
Sbjct: 13286823 attatggtagtttgttgatt 13286804



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 41       attatggtagtttgttgatt 60
                ||||||||||||||||||||
Sbjct: 13279656 attatggtagtttgttgatt 13279637



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 148     atctgaaattccaagcccaa 167
               ||||||||||||||||||||
Sbjct: 5013770 atctgaaattccaagcccaa 5013751


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,549,630
Number of Sequences: 3902068
Number of extensions: 4549630
Number of successful extensions: 72699
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72582
Number of HSP's gapped (non-prelim): 117
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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