ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet79h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide ... 264 6e-68
2emb|X76532.1|TAPWR5PI Triticum aestivium pWR5 RNA for protochlor... 176 1e-41
3emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide red... 131 6e-28
4gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosom... 40 1.6
5emb|AL928676.13| Zebrafish DNA sequence from clone DKEY-121K17, ... 40 1.6
6ref|XM_968605.1| PREDICTED: Tribolium castaneum similar to Cytoc... 38 6.3
7emb|BX248104.5| Zebrafish DNA sequence from clone DKEY-77P13 in ... 38 6.3

>emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide oxidoreductase (PCR)
          Length = 1490

 Score =  264 bits (133), Expect = 6e-68
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    catcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatcttc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1488 catcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatcttc 1429

                                                                        
Query: 61   cacacgagatctatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagctt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1428 cacacgagatctatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagctt 1369

                         
Query: 121  ctaaaaaggcgta 133
            |||||||||||||
Sbjct: 1368 ctaaaaaggcgta 1356



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>emb|X76532.1|TAPWR5PI Triticum aestivium pWR5 RNA for protochlorophyilide reductase
          Length = 1484

 Score =  176 bits (89), Expect = 1e-41
 Identities = 123/133 (92%), Gaps = 1/133 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    catcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatcttc 60
            ||||||||||||| |||||||||||||||||| |  ||| ||||||||||||||||||||
Sbjct: 1472 catcctcaatcagacctgcggttttattattc-atggttcgccgaaaattgtacatcttc 1414

                                                                        
Query: 61   cacacgagatctatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagctt 120
            ||||||||||||| |||||||||| | |||||||||||||||||| ||||||||||| ||
Sbjct: 1413 cacacgagatctacgcactctcgccgacactcgcaaggcctctcccgcgtaattgagttt 1354

                         
Query: 121  ctaaaaaggcgta 133
            |||||||||||||
Sbjct: 1353 ctaaaaaggcgta 1341



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>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase
          Length = 1146

 Score =  131 bits (66), Expect = 6e-28
 Identities = 98/106 (92%), Gaps = 2/106 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    catcctcaatcaggcctgcggttttattattccaatgttt-gccgaaaattgtacatctt 59
            |||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 1146 catcctcaattaggcctgcggttttattattccaatggttcgccgaaaattgtacatctt 1087

                                                          
Query: 60   ccacacgagatctatgcactctcgcggccactcgc-aaggcctctc 104
            |||| ||||||||||| |||| ||||| ||||||| ||||||||||
Sbjct: 1086 ccacccgagatctatgtactcccgcggacactcgcaaaggcctctc 1041



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>gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosome 18, complete
             sequence
          Length = 181811

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aaattgtacatcttccacac 65
             ||||||||||||||||||||
Sbjct: 24311 aaattgtacatcttccacac 24292



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>emb|AL928676.13| Zebrafish DNA sequence from clone DKEY-121K17, complete sequence
          Length = 176196

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ttttattattccaatgtttg 41
              ||||||||||||||||||||
Sbjct: 105180 ttttattattccaatgtttg 105199



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>ref|XM_968605.1| PREDICTED: Tribolium castaneum similar to Cytochrome P450 4c3
           (CYPIVC3) (LOC662514), mRNA
          Length = 1488

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 27  ttattccaatgtttgccgaaaat 49
           ||||||| |||||||||||||||
Sbjct: 476 ttattcccatgtttgccgaaaat 454



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>emb|BX248104.5| Zebrafish DNA sequence from clone DKEY-77P13 in linkage group 20,
             complete sequence
          Length = 139851

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    ttttattattccaatgttt 40
             |||||||||||||||||||
Sbjct: 92684 ttttattattccaatgttt 92702


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 866,320
Number of Sequences: 3902068
Number of extensions: 866320
Number of successful extensions: 56716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56706
Number of HSP's gapped (non-prelim): 8
length of query: 133
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 112
effective length of database: 17,151,101,840
effective search space: 1920923406080
effective search space used: 1920923406080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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