ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet79g04 |
|---|---|
| Clone Library Name | barley_pub |
>KCNT1_CHICK (Q8QFV0) Potassium channel subfamily T member 1 (Sequence-like a| calcium-activated potassium channel subunit) Length = 1201 Score = 32.3 bits (72), Expect = 0.29 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -2 Query: 184 PNAPYICTFHPSCDQRPLPDGAPTCCKGISNGCK 83 PN+PYI + C LP+ AP CC + GCK Sbjct: 728 PNSPYIGSSPTLCHL--LPEKAPFCCLRLDKGCK 759
>KCNT1_RAT (Q9Z258) Potassium channel subfamily T member 1 (Sequence-like a| calcium-activated potassium channel subunit) Length = 1237 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -2 Query: 184 PNAPYICTFHPSCDQRPLPDGAPTCCKGISNGCK 83 PN+PYI + C LP AP CC + GCK Sbjct: 734 PNSPYIGSSPTLCHL--LPVKAPFCCLRLDKGCK 765
>VG18_ICHV1 (Q00120) Hypothetical gene 18 protein| Length = 318 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 88 NHWRCPYSTSEHRQVKGADHKKDERYRYKEHLEPRV 195 +H+ STS RQ +G D K + +R+ HL+P V Sbjct: 64 HHYAAEVSTS--RQYRGGDFKGEPAFRFSPHLDPTV 97
>KCNT1_MOUSE (Q6ZPR4) Potassium channel subfamily T member 1| Length = 1224 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -2 Query: 184 PNAPYICTFHPSCDQRPLPDGAPTCCKGISNGCK 83 PN+PYI + C LP AP CC + GCK Sbjct: 722 PNSPYIGSSPTLCHL--LPVKAPFCCLRLDKGCK 753
>KCNT1_HUMAN (Q5JUK3) Potassium channel subfamily T member 1 (KCa4.1)| Length = 1230 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -2 Query: 184 PNAPYICTFHPSCDQRPLPDGAPTCCKGISNGCK 83 PN+PYI + C LP AP CC + GCK Sbjct: 736 PNSPYIGSSPTLCHL--LPVKAPFCCLRLDKGCK 767
>IFT81_HUMAN (Q8WYA0) Intraflagellar transport 81 (Carnitine| deficiency-associated protein expressed in ventricle 1) (CDV-1 protein) Length = 676 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +1 Query: 64 QNYQQLSYNHWRCPYSTSEHRQ-VKGADHKKDERYRYKEHLEPRVKTNFSHVTTSFLLAL 240 + Y+QL + +ST+E R+ + + +KD+ + EHL+ RV+T +H ++L + Sbjct: 156 KEYEQLKISG----FSTAEIRKDISAMEEEKDQLIKRVEHLKKRVETAQNH---QWMLKI 208 Query: 241 VESYRYIK*KKE 276 R K ++E Sbjct: 209 ARQLRVEKEREE 220
>SPT6H_MOUSE (Q62383) Transcription elongation factor SPT6| Length = 1726 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/42 (28%), Positives = 20/42 (47%) Frame = +1 Query: 88 NHWRCPYSTSEHRQVKGADHKKDERYRYKEHLEPRVKTNFSH 213 N W+ P T + ADHK++E + K+ +K +H Sbjct: 1291 NEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAH 1332
>SPT6H_HUMAN (Q7KZ85) Transcription elongation factor SPT6 (hSPT6)| (Tat-cotransactivator 2 protein) (Tat-CT2 protein) Length = 1726 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/42 (28%), Positives = 20/42 (47%) Frame = +1 Query: 88 NHWRCPYSTSEHRQVKGADHKKDERYRYKEHLEPRVKTNFSH 213 N W+ P T + ADHK++E + K+ +K +H Sbjct: 1291 NEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAH 1332
>RF1_METJA (Q58239) Peptide chain release factor subunit 1 (Translation| termination factor aRF1) Length = 421 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = +2 Query: 134 RALITRRMKGTDIRSIWNPESKRISPMLQHL 226 + L +++ KGT++ S++ P +RIS + QHL Sbjct: 17 KELKSKKGKGTELISLYIPAGRRISDVAQHL 47
>KLKB1_HUMAN (P03952) Plasma kallikrein precursor (EC 3.4.21.34) (Plasma| prekallikrein) (Kininogenin) (Fletcher factor) [Contains: Plasma kallikrein heavy chain; Plasma kallikrein light chain] Length = 638 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%) Frame = -2 Query: 268 FTLCTCSFLLVREEKML*HGRNSF*LWVPNAPYI---CTFHPSC 146 F +C L E G + ++ PNA Y CTFHP C Sbjct: 14 FATVSCGCLTQLYENAFFRGGDVASMYTPNAQYCQMRCTFHPRC 57
>CYSP_SCHMA (P25792) Cathepsin B-like cysteine proteinase precursor (EC| 3.4.22.-) (Antigen Sm31) Length = 340 Score = 27.7 bits (60), Expect = 7.2 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Frame = +1 Query: 43 IIKNPMCQNYQQLSYNHWRCPYSTSEHRQVKGADHKKDERYRYKEHLE-PRVKTNFSHVT 219 I P C+ Q Y + PY+ +HR + K DE+ KE ++ V+ +F+ V Sbjct: 210 IYNTPRCKQTCQRKY---KTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEASFT-VY 265 Query: 220 TSFLLALVESYRYIK*KKEGGVEGIRLANFG 312 FL Y++I + GG IR+ +G Sbjct: 266 EDFLNYKSGIYKHITGEALGG-HAIRIIGWG 295
>PACC_YARLI (P78978) pH-response transcription factor pacC/RIM101| Length = 585 Score = 27.7 bits (60), Expect = 7.2 Identities = 20/69 (28%), Positives = 27/69 (39%) Frame = -2 Query: 340 CDPHAGRRKRQNLRAVSPPLRPPFFTLCTCSFLLVREEKML*HGRNSF*LWVPNAPYICT 161 CD H GR+ NL V C + V+ + + H R + VP PY C Sbjct: 168 CDAHVGRKCTHNLSLVC--------NWDNCGIVTVKRDHITSHIR----VHVPLKPYKCD 215 Query: 160 FHPSCDQRP 134 F +RP Sbjct: 216 FCTKSFKRP 224
>GCST_CHICK (P28337) Aminomethyltransferase, mitochondrial precursor (EC| 2.1.2.10) (Glycine cleavage system T protein) (GCVT) Length = 392 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 322 RRKRQNLRAVSPPLRPP 272 +RKR L +V PPLRPP Sbjct: 306 KRKRVGLTSVGPPLRPP 322
>SPC42_YEAST (P36094) Spindle pole body component SPC42| Length = 363 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/58 (24%), Positives = 26/58 (44%) Frame = +1 Query: 1 TYNLVLFPYLLQ*HIIKNPMCQNYQQLSYNHWRCPYSTSEHRQVKGADHKKDERYRYK 174 T+ + FP + + +P+ +NY Q++ R P +T R + D+ R K Sbjct: 131 TFKEMRFPKVKDPMVDDDPVSENYDQINVPKHRAPDATGNPRTTNKVSNTSDQDSRLK 188
>SIRK_ARATH (O64483) Senescence-induced receptor-like serine/threonine-protein| kinase precursor (FLG22-induced receptor-like kinase 1) Length = 876 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +2 Query: 2 HTTLFSFLIYCNDTSSKILCVKITNNYLTTIGDALTARRSTV 127 HT L S + YCN+ + +L + N +GD L +RS + Sbjct: 626 HTNLTSLVGYCNEINHMVLIYEYMAN--ENLGDYLAGKRSFI 665
>TBG_SCHJP (Q9Y882) Tubulin gamma chain (Gamma tubulin)| Length = 446 Score = 27.3 bits (59), Expect = 9.4 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 10/57 (17%) Frame = +1 Query: 64 QNYQQLSYNHWRCPYSTSEHRQVKGADHK-------KDERYRYKE---HLEPRVKTN 204 Q +QQL H CP T E +G D K D RY + LEPRV N Sbjct: 20 QFWQQLCLEHGICPDGTLEDFATEGLDRKDVFFYQSDDTRYIPRAILLDLEPRVVNN 76
>RK22_ADICA (Q85FI3) Chloroplast 50S ribosomal protein L22| Length = 122 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -2 Query: 190 WVPNAPYICTFHPSCDQRPLPDGAPTC 110 WV N+ Y+ F P R P PTC Sbjct: 83 WVDNSKYLRRFRPRAQGRGYPIKKPTC 109
>T2R16_RAT (Q9JKU0) Taste receptor type 2 member 16 (T2R16) (T2R18) (T2R3)| Length = 299 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3 Query: 213 MGEIRFDSGFQMLLISVPFILLVISALYLTV 121 M E F + F+M+ VPF++ +IS + LTV Sbjct: 172 MFEWYFSNPFKMIGFGVPFLVFLISIILLTV 202
>KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)| Length = 1097 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 4/30 (13%) Frame = +3 Query: 33 AMTHHQKSYVSKLPTTI----LQPLEMPLQ 110 ++ H ++VSKLPTT+ +P+E+P Q Sbjct: 595 SVVHQDTNFVSKLPTTVQNKYQEPVELPPQ 624 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,243,906 Number of Sequences: 219361 Number of extensions: 1116766 Number of successful extensions: 3114 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3052 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3113 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
