ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet79g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X57407.1|TAPPSBP Wheat PsbP mRNA for 23 kDa oxygen evolving ... 234 7e-59
2gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, co... 42 0.52
3emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase... 42 0.52
4gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete... 42 0.52
5gb|AC158392.2| Mus musculus BAC clone RP24-87B5 from chromosome ... 40 2.0
6ref|XM_672016.1| Plasmodium berghei strain ANKA hypothetical pro... 40 2.0
7dbj|AK124745.1| Homo sapiens cDNA FLJ42755 fis, clone BRAWH3001475 40 2.0
8gb|AC023283.10| Homo sapiens chromosome 10 clone RP11-539I5, com... 40 2.0
9gb|AC005661.1|AC005661 citb_54_o_2, complete sequence 40 2.0
10gb|AC163610.4| Mus musculus BAC clone RP23-59P17 from chromosome... 38 8.1
11ref|NM_186247.2| Oryza sativa (japonica cultivar-group), mRNA 38 8.1
12gb|AC131976.6| Mus musculus chromosome 1, clone RP24-150D10, com... 38 8.1
13gb|AC125025.7| Mus musculus chromosome 5, clone RP24-340K5, comp... 38 8.1
14gb|AC125534.4| Mus musculus BAC clone RP23-460A22 from chromosom... 38 8.1
15gb|AC091611.5| Homo sapiens chromosome 1 clone RP11-369L17, comp... 38 8.1
16gb|AC112998.15| Mus musculus chromosome 3, clone RP23-147E7, com... 38 8.1
17gb|AC122828.3| Mus musculus BAC clone RP23-215B8 from 13, comple... 38 8.1
18emb|AL954705.14| Human DNA sequence from clone RP13-15M17 on chr... 38 8.1
19emb|AL445195.4| Human DNA sequence from clone RP11-427O13 on chr... 38 8.1
20emb|Z97344.2|ATFCA9 Arabidopsis thaliana DNA chromosome 4, ESSA ... 38 8.1
21emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, ... 38 8.1
22emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, ... 38 8.1
23gb|AC158746.8| Mus musculus chromosome 1, clone RP23-50E17, comp... 38 8.1
24gb|AC117834.6| Homo sapiens chromosome 8, clone CTD-3239E11, com... 38 8.1
25emb|BX470135.8| Zebrafish DNA sequence from clone RP71-15H20 in ... 38 8.1
26emb|X68303.1|HSCYCLA H.sapiens cycA gene for cyclin A 38 8.1
27gb|AF518006.1| Homo sapiens cyclin A2 (CCNA2) gene, complete cds 38 8.1
28gb|AC104462.1| Homo sapiens chromosome 1 clone RP11-522M21, comp... 38 8.1
29gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, com... 38 8.1
30gb|AC159095.4| Mus musculus chromosome 1, clone RP24-278F22, com... 38 8.1
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
32gb|AC079341.6| Homo sapiens BAC clone RP11-63B13 from 4, complet... 38 8.1
33gb|AC135803.2| Homo sapiens chromosome 1 clone RP11-17E13, compl... 38 8.1
34gb|AC124862.4| Homo sapiens BAC clone RP11-27M15 from 2, complet... 38 8.1
35emb|AL713977.13| Mouse DNA sequence from clone RP23-303A21 on ch... 38 8.1
36dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
37dbj|AK104722.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.1
38dbj|AK065248.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.1
39gb|AC006582.13|AC006582 Pan troglodytes 12cp12 BAC RPCI43-77C18 ... 38 8.1
40gb|AF052203.1|AF052203 Oryza sativa 23 kDa polypeptide of photos... 38 8.1
41emb|CR556714.4| Zebrafish DNA sequence from clone DKEY-29P13 in ... 38 8.1
42emb|AL773601.11| Zebrafish DNA sequence from clone CH211-199O1, ... 38 8.1
43emb|AL671492.12| Mouse DNA sequence from clone RP23-286H11 on ch... 38 8.1
44emb|AL928966.3| Mouse DNA sequence from clone RP24-388A9 on chro... 38 8.1
45dbj|D49713.1|RICOSEE2 Rice OSOEE2 gene for 23 kDa polypeptide of... 38 8.1
46emb|AL663100.12| Human DNA sequence from clone RP5-1052J3 on chr... 38 8.1 
>emb|X57407.1|TAPPSBP Wheat PsbP mRNA for 23 kDa oxygen evolving protein of photosystem
           II
          Length = 967

 Score =  234 bits (118), Expect = 7e-59
 Identities = 153/162 (94%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   agggaaatcgacctcttagttcatccatcctcatgtacaaatcaaagaaacacacatgca 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 agggaaatcgacctcttagttcatccatcctcatgtacaaatcaaagaaacacacatgca 868

                                                                       
Query: 66  tgccctggatcggtctctacacggtgcttccctgaggaga-ttccattaaattcgccgat 124
           |||||| |||||||||||||| ||||| |||||||||| | |||||||||| |||||| |
Sbjct: 867 tgccct-gatcggtctctacatggtgcatccctgaggaaatttccattaaactcgccggt 809

                                                     
Query: 125 cggtcatgtatatttatgcgacactgaaggatcctgcggcgt 166
           ||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 808 cggtcgtgtatatttatgcgacgctgaaggatcctgcggcgt 767
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>gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, complete sequence
          Length = 214124

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     tccatcctcatgtacaaatca 49
              |||||||||||||||||||||
Sbjct: 136776 tccatcctcatgtacaaatca 136756
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>emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase gene locus (PADI12346 genes)
          Length = 355060

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 5      gagggaaatcgacctcttagttcat 29
              ||||||||||||||||| |||||||
Sbjct: 304548 gagggaaatcgacctctaagttcat 304572
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>gb|AC004824.3| Homo sapiens PAC clone RP1-20B21 from 1, complete sequence
          Length = 137506

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 5      gagggaaatcgacctcttagttcat 29
              ||||||||||||||||| |||||||
Sbjct: 103537 gagggaaatcgacctctaagttcat 103513
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>gb|AC158392.2| Mus musculus BAC clone RP24-87B5 from chromosome 14, complete sequence
          Length = 187798

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 42    acaaatcaaagaaacacacatgca 65
             |||||| |||||||||||||||||
Sbjct: 74134 acaaatgaaagaaacacacatgca 74157
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>ref|XM_672016.1| Plasmodium berghei strain ANKA hypothetical protein (PB000859.01.0)
           partial mRNA
          Length = 1608

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 attccattaaattcgccgat 124
           ||||||||||||||||||||
Sbjct: 751 attccattaaattcgccgat 770
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>dbj|AK124745.1| Homo sapiens cDNA FLJ42755 fis, clone BRAWH3001475
          Length = 3636

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   acaaatcaaagaaacacaca 61
            ||||||||||||||||||||
Sbjct: 1906 acaaatcaaagaaacacaca 1887
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>gb|AC023283.10| Homo sapiens chromosome 10 clone RP11-539I5, complete sequence
          Length = 218074

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     acaaatcaaagaaacacaca 61
              ||||||||||||||||||||
Sbjct: 108556 acaaatcaaagaaacacaca 108575
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>gb|AC005661.1|AC005661 citb_54_o_2, complete sequence
          Length = 84633

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    acaaatcaaagaaacacaca 61
             ||||||||||||||||||||
Sbjct: 25815 acaaatcaaagaaacacaca 25834
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>gb|AC163610.4| Mus musculus BAC clone RP23-59P17 from chromosome 13, complete sequence
          Length = 237111

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 43     caaatcaaagaaacacacatgca 65
              ||||| |||||||||||||||||
Sbjct: 215327 caaatgaaagaaacacacatgca 215305
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>ref|NM_186247.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1114

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                       
Query: 35   ctcatgtacaaatcaaagaaacacaca 61
            ||||||||||| |||||||||||||||
Sbjct: 1005 ctcatgtacaa-tcaaagaaacacaca 980
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>gb|AC131976.6| Mus musculus chromosome 1, clone RP24-150D10, complete sequence
          Length = 167470

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    aatcaaagaaacacacatg 63
             |||||||||||||||||||
Sbjct: 86311 aatcaaagaaacacacatg 86293
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>gb|AC125025.7| Mus musculus chromosome 5, clone RP24-340K5, complete sequence
          Length = 175313

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     aatcaaagaaacacacatg 63
              |||||||||||||||||||
Sbjct: 130124 aatcaaagaaacacacatg 130106
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>gb|AC125534.4| Mus musculus BAC clone RP23-460A22 from chromosome 13, complete sequence
          Length = 181040

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 44     aaatcaaagaaacacacat 62
              |||||||||||||||||||
Sbjct: 140298 aaatcaaagaaacacacat 140316
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>gb|AC091611.5| Homo sapiens chromosome 1 clone RP11-369L17, complete sequence
          Length = 198486

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    aagaaacacacatgcatgc 68
             |||||||||||||||||||
Sbjct: 32820 aagaaacacacatgcatgc 32802
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>gb|AC112998.15| Mus musculus chromosome 3, clone RP23-147E7, complete sequence
          Length = 203273

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    gtctctacacggtgcttcc 96
             |||||||||||||||||||
Sbjct: 15928 gtctctacacggtgcttcc 15910
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>gb|AC122828.3| Mus musculus BAC clone RP23-215B8 from 13, complete sequence
          Length = 198604

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 44   aaatcaaagaaacacacat 62
            |||||||||||||||||||
Sbjct: 4299 aaatcaaagaaacacacat 4317
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>emb|AL954705.14| Human DNA sequence from clone RP13-15M17 on chromosome 1, complete
             sequence
          Length = 66275

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    cttagttcatccatcctca 38
             |||||||||||||||||||
Sbjct: 49142 cttagttcatccatcctca 49160
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>emb|AL445195.4| Human DNA sequence from clone RP11-427O13 on chromosome 13 Contains 2
              NADH dehydrogenase pseudogenes and a novel gene, complete
              sequence
          Length = 172064

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     atccatcctcatgtacaaa 46
              |||||||||||||||||||
Sbjct: 101520 atccatcctcatgtacaaa 101502
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>emb|Z97344.2|ATFCA9 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No.
            9
          Length = 81835

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 53   aaacacacatgcatgccct 71
            |||||||||||||||||||
Sbjct: 9444 aaacacacatgcatgccct 9426
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>emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47
          Length = 198067

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 53   aaacacacatgcatgccct 71
            |||||||||||||||||||
Sbjct: 4456 aaacacacatgcatgccct 4438
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>emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46
          Length = 198788

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     aaacacacatgcatgccct 71
              |||||||||||||||||||
Sbjct: 198244 aaacacacatgcatgccct 198226
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>gb|AC158746.8| Mus musculus chromosome 1, clone RP23-50E17, complete sequence
          Length = 245991

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    ctcttagttcatccatcct 36
             |||||||||||||||||||
Sbjct: 79619 ctcttagttcatccatcct 79637
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>gb|AC117834.6| Homo sapiens chromosome 8, clone CTD-3239E11, complete sequence
          Length = 189536

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    caaagaaacacacatgcat 66
             |||||||||||||||||||
Sbjct: 18552 caaagaaacacacatgcat 18534
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>emb|BX470135.8| Zebrafish DNA sequence from clone RP71-15H20 in linkage group 8, complete
              sequence
          Length = 147292

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     catgtacaaatcaaagaaa 55
              |||||||||||||||||||
Sbjct: 125409 catgtacaaatcaaagaaa 125391
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>emb|X68303.1|HSCYCLA H.sapiens cycA gene for cyclin A
          Length = 8363

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 52   gaaacacacatgcatgccc 70
            |||||||||||||||||||
Sbjct: 6874 gaaacacacatgcatgccc 6856
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>gb|AF518006.1| Homo sapiens cyclin A2 (CCNA2) gene, complete cds
          Length = 9323

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 52   gaaacacacatgcatgccc 70
            |||||||||||||||||||
Sbjct: 7386 gaaacacacatgcatgccc 7368
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>gb|AC104462.1| Homo sapiens chromosome 1 clone RP11-522M21, complete sequence
          Length = 183271

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 55     acacacatgcatgccctgg 73
              |||||||||||||||||||
Sbjct: 118464 acacacatgcatgccctgg 118482
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>gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, complete sequence
          Length = 167984

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 48    caaagaaacacacatgcat 66
             |||||||||||||||||||
Sbjct: 30511 caaagaaacacacatgcat 30529
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>gb|AC159095.4| Mus musculus chromosome 1, clone RP24-278F22, complete sequence
          Length = 157935

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 45    aatcaaagaaacacacatg 63
             |||||||||||||||||||
Sbjct: 38910 aatcaaagaaacacacatg 38928
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                          
Query: 35      ctcatgtacaaatcaaagaaacacaca 61
               ||||||||||| |||||||||||||||
Sbjct: 2169140 ctcatgtacaa-tcaaagaaacacaca 2169165
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>gb|AC079341.6| Homo sapiens BAC clone RP11-63B13 from 4, complete sequence
          Length = 149819

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    gaaacacacatgcatgccc 70
             |||||||||||||||||||
Sbjct: 77675 gaaacacacatgcatgccc 77693
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>gb|AC135803.2| Homo sapiens chromosome 1 clone RP11-17E13, complete sequence
          Length = 67619

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    aagaaacacacatgcatgc 68
             |||||||||||||||||||
Sbjct: 57106 aagaaacacacatgcatgc 57088
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>gb|AC124862.4| Homo sapiens BAC clone RP11-27M15 from 2, complete sequence
          Length = 160111

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     aaacacacatgcatgccct 71
              |||||||||||||||||||
Sbjct: 134130 aaacacacatgcatgccct 134148
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>emb|AL713977.13| Mouse DNA sequence from clone RP23-303A21 on chromosome X, complete
              sequence
          Length = 159014

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 37     catgtacaaatcaaagaaa 55
              |||||||||||||||||||
Sbjct: 143589 catgtacaaatcaaagaaa 143607
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>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1351_C05
          Length = 112465

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                        
Query: 35    ctcatgtacaaatcaaagaaacacaca 61
             ||||||||||| |||||||||||||||
Sbjct: 37042 ctcatgtacaa-tcaaagaaacacaca 37067
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>dbj|AK104722.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B02, full
           insert sequence
          Length = 1078

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                      
Query: 35  ctcatgtacaaatcaaagaaacacaca 61
           ||||||||||| |||||||||||||||
Sbjct: 961 ctcatgtacaa-tcaaagaaacacaca 936
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>dbj|AK065248.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J02, full
            insert sequence
          Length = 1114

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                       
Query: 35   ctcatgtacaaatcaaagaaacacaca 61
            ||||||||||| |||||||||||||||
Sbjct: 1005 ctcatgtacaa-tcaaagaaacacaca 980
to top
>gb|AC006582.13|AC006582 Pan troglodytes 12cp12 BAC RPCI43-77C18 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 186092

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 44     aaatcaaagaaacacacat 62
              |||||||||||||||||||
Sbjct: 107681 aaatcaaagaaacacacat 107699
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>gb|AF052203.1|AF052203 Oryza sativa 23 kDa polypeptide of photosystem II mRNA, complete
           cds
          Length = 1107

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                      
Query: 35  ctcatgtacaaatcaaagaaacacaca 61
           ||||||||||| |||||||||||||||
Sbjct: 980 ctcatgtacaa-tcaaagaaacacaca 955
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>emb|CR556714.4| Zebrafish DNA sequence from clone DKEY-29P13 in linkage group 11,
             complete sequence
          Length = 124598

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 49    aaagaaacacacatgcatg 67
             |||||||||||||||||||
Sbjct: 96281 aaagaaacacacatgcatg 96263
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>emb|AL773601.11| Zebrafish DNA sequence from clone CH211-199O1, complete sequence
          Length = 201299

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     catgtacaaatcaaagaaa 55
              |||||||||||||||||||
Sbjct: 137899 catgtacaaatcaaagaaa 137881
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>emb|AL671492.12| Mouse DNA sequence from clone RP23-286H11 on chromosome X, complete
             sequence
          Length = 202638

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 37    catgtacaaatcaaagaaacaca 59
             ||||||||||| |||||||||||
Sbjct: 56740 catgtacaaataaaagaaacaca 56762
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>emb|AL928966.3| Mouse DNA sequence from clone RP24-388A9 on chromosome 2, complete
              sequence
          Length = 173369

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     aatcaaagaaacacacatg 63
              |||||||||||||||||||
Sbjct: 158704 aatcaaagaaacacacatg 158686
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>dbj|D49713.1|RICOSEE2 Rice OSOEE2 gene for 23 kDa polypeptide of photosystem II, complete
           cds
          Length = 1008

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                      
Query: 35  ctcatgtacaaatcaaagaaacacaca 61
           ||||||||||| |||||||||||||||
Sbjct: 919 ctcatgtacaa-tcaaagaaacacaca 894
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>emb|AL663100.12| Human DNA sequence from clone RP5-1052J3 on chromosome 1, complete
             sequence
          Length = 80421

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    cttagttcatccatcctca 38
             |||||||||||||||||||
Sbjct: 21192 cttagttcatccatcctca 21174


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,660,943
Number of Sequences: 3902068
Number of extensions: 1660943
Number of successful extensions: 123495
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 123366
Number of HSP's gapped (non-prelim): 135
length of query: 166
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 144
effective length of database: 17,147,199,772
effective search space: 2469196767168
effective search space used: 2469196767168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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