ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet79f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YDQ4_SCHPO (O14197) Hypothetical protein C5D6.04 in chromosome I 28 4.5
2SOAT2_HUMAN (O75908) Sterol O-acyltransferase 2 (EC 2.3.1.26) (C... 28 5.9

>YDQ4_SCHPO (O14197) Hypothetical protein C5D6.04 in chromosome I|
          Length = 452

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 303 VLMLQFALPPAMSIGTMAQLYDVAQEECSVIFLWTYLV 190
           V+ L    P A+ +  + QL  V + EC+ +  W+Y V
Sbjct: 394 VIFLLVGSPTAIQLTQICQLNGVFERECAKVLWWSYAV 431



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>SOAT2_HUMAN (O75908) Sterol O-acyltransferase 2 (EC 2.3.1.26) (Cholesterol|
           acyltransferase 2) (Acyl coenzyme A:cholesterol
           acyltransferase 2) (ACAT-2)
          Length = 522

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = -2

Query: 213 IFLWTYLVAALALTAWSTVFMSILAA*YIA----STSI*ESIGLLVCILLVLHQFLLIAI 46
           + ++++    LAL  W  +F+S L A Y A    +         L C LL  H  +L A+
Sbjct: 155 LLIFSFGQLPLALVTWVPMFLSTLLAPYQALRLWARGTWTQATGLGCALLAAHAVVLCAL 214

Query: 45  SIYVQLVFIQVSLPP 1
            ++V    ++  LPP
Sbjct: 215 PVHVA---VEHQLPP 226


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,544,074
Number of Sequences: 219361
Number of extensions: 253170
Number of successful extensions: 627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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