ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet79e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.070
2emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.070
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.070
4emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F... 44 0.070
5emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.070
6ref|XM_728198.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 0.28
7gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, comple... 40 1.1
8gb|AC186002.3| Pan troglodytes BAC clone CH251-86D23 from chromo... 40 1.1
9gb|AC124434.3| Mus musculus BAC clone RP24-250K22 from chromosom... 40 1.1
10emb|AL772307.15| Human DNA sequence from clone RP11-416B15 on ch... 40 1.1
11emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on ch... 40 1.1
12emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chro... 40 1.1
13emb|AL591438.6| Human DNA sequence from clone RP11-452D2 on chro... 40 1.1
14emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chr... 40 1.1
15emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on ch... 40 1.1
16emb|AL023713.1|HS324L9 Human DNA sequence from clone RP3-324L9 o... 40 1.1
17gb|AC183610.3| Pan troglodytes BAC clone CH251-223D9 from chromo... 40 1.1
18emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chro... 40 1.1
19emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chr... 40 1.1
20emb|BX511233.10| Zebrafish DNA sequence from clone CH211-152P11 ... 40 1.1
21emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chr... 40 1.1
22emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chr... 40 1.1
23gb|AC139064.13| Mus musculus chromosome 1, clone RP23-76C20, com... 38 4.3
24gb|AC079736.13| Oryza sativa (japonica cultivar-group) chromosom... 38 4.3
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 4.3
26gb|AC147144.2| Pan troglodytes BAC clone CH251-278J22 from Y, co... 38 4.3
27gb|AC155829.5| Mus musculus 10 BAC RP24-534E16 (Roswell Park Can... 38 4.3
28emb|AL513175.10| Human DNA sequence from clone RP11-142L4 on chr... 38 4.3
29emb|AL121761.5|HSJ122P22 Human DNA sequence from clone RP1-122P2... 38 4.3
30emb|AL078623.28|HSJ1069C8 Human DNA sequence from clone RP5-1069... 38 4.3
31dbj|BS000638.2| Pan troglodytes chromosome Y clone: PTBY-011C06,... 38 4.3
32dbj|BS000637.2| Pan troglodytes chromosome Y clone: PTBY-009K23,... 38 4.3
33dbj|BS000660.1| Pan troglodytes chromosome Y clone:PTBY-005M17, ... 38 4.3
34gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 38 4.3
35gb|AC112250.4| Homo sapiens BAC clone RP11-710E1 from 4, complet... 38 4.3
36gb|AY243312.1| Vaccinia virus WR, complete genome 38 4.3
37dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 38 4.3
38gb|AC091727.2|AC091727 Takifugu rubripes clone 250A8, complete s... 38 4.3
39emb|BX255915.13| Zebrafish DNA sequence from clone CH211-245L1 i... 38 4.3
40gb|AC149134.2| Medicago truncatula, complete sequence 38 4.3
41gb|AC154706.2| Mus musculus BAC clone RP23-132D23 from chromosom... 38 4.3
42gb|AC084406.7|AC084406 Oryza sativa chromosome 3 BAC OSJNBa0067E... 38 4.3
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.3
44dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.3
45emb|BX324171.9| Zebrafish DNA sequence from clone DKEYP-57C9 in ... 38 4.3
46gb|AC064833.6| Homo sapiens BAC clone RP11-549B23 from 2, comple... 38 4.3
47gb|AC010723.3|AC010723 Homo sapiens BAC clone RP11-139C10 from Y... 38 4.3
48gb|AY965326.1| Synthetic construct clone VACV-WR_023 unknown gene 38 4.3
49dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.3
50emb|BX321890.5| Zebrafish DNA sequence from clone CH211-258D5 in... 38 4.3
51dbj|AB034945.1| Herzogiella perrobusta chloroplast psaB gene for... 38 4.3
52dbj|AB024672.1| Neodolichomitra yunnanensis chloroplast gene for... 38 4.3
53dbj|AB024669.1| Rhytidiadelphus triquetrus chloroplast gene for ... 38 4.3
54dbj|AB024663.1| Hylocomium splendens chloroplast gene for P700 c... 38 4.3
55dbj|AB024661.1| Hylocomiastrum pyrenaicum chloroplast gene for P... 38 4.3
56dbj|AB024659.1| Loeskeobryum cavifolium chloroplast gene for P70... 38 4.3
57dbj|AB024651.1| Isopterygium vineale chloroplast gene for P700 c... 38 4.3
58dbj|AB024646.1| Pylaisia polyantha chloroplast gene for P700 chl... 38 4.3
59dbj|AB024638.1| Stereophyllum radiculosum chloroplast gene for P... 38 4.3
60dbj|AB024636.1| Entodontopsis leucostega chloroplast gene for P7... 38 4.3
61dbj|AB024633.1| Plagiothecium nemorale chloroplast gene for P700... 38 4.3
62dbj|AB078009.1| Physcomitrella patens chloroplast genes for phot... 38 4.3
63emb|BX001041.6| Zebrafish DNA sequence from clone CH211-62M7, co... 38 4.3
64emb|AL928628.9| Zebrafish DNA sequence from clone DKEY-5G18 in l... 38 4.3
65dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast ... 38 4.3
66gb|M22812.1|VACLEND Vaccinia virus genome, left end 38 4.3 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.070
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 54      atatatttacagcaattacatacttg 79
               ||||||||||||||| ||||||||||
Sbjct: 5585379 atatatttacagcaagtacatacttg 5585354
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>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 117585

 Score = 44.1 bits (22), Expect = 0.070
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 54    atatatttacagcaattacatacttg 79
             ||||||||||||||| ||||||||||
Sbjct: 12756 atatatttacagcaagtacatacttg 12781
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.070
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 54      atatatttacagcaattacatacttg 79
               ||||||||||||||| ||||||||||
Sbjct: 5585368 atatatttacagcaagtacatacttg 5585343
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>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar
              Nipponbare of ssp. japonica of Oryza sativa (rice),
              complete sequence
          Length = 160556

 Score = 44.1 bits (22), Expect = 0.070
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 54     atatatttacagcaattacatacttg 79
              ||||||||||||||| ||||||||||
Sbjct: 138184 atatatttacagcaagtacatacttg 138159
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>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 139684

 Score = 44.1 bits (22), Expect = 0.070
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 54    atatatttacagcaattacatacttg 79
             ||||||||||||||| ||||||||||
Sbjct: 67506 atatatttacagcaagtacatacttg 67531
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>ref|XM_728198.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000510.00.0)
           partial mRNA
          Length = 465

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 42  agcaataaaagcatatattta 62
           |||||||||||||||||||||
Sbjct: 196 agcaataaaagcatatattta 176
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>gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, complete sequence
          Length = 184603

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 39     tatagcaataaaagcatatattta 62
              ||||||| ||||||||||||||||
Sbjct: 118768 tatagcattaaaagcatatattta 118745
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>gb|AC186002.3| Pan troglodytes BAC clone CH251-86D23 from chromosome 9, complete
              sequence
          Length = 162651

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     aataaaagcatatatttaca 64
              ||||||||||||||||||||
Sbjct: 103535 aataaaagcatatatttaca 103554
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>gb|AC124434.3| Mus musculus BAC clone RP24-250K22 from chromosome 8, complete sequence
          Length = 167741

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    tatagcaataaaagcatatattta 62
             ||||||| ||||||||||||||||
Sbjct: 46248 tatagcattaaaagcatatattta 46225
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>emb|AL772307.15| Human DNA sequence from clone RP11-416B15 on chromosome 9 Contains a
              pseudogene similar to part of ribosomal protein L7a (RPL7A)
              and a CpG island, complete sequence
          Length = 161380

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     aataaaagcatatatttaca 64
              ||||||||||||||||||||
Sbjct: 120272 aataaaagcatatatttaca 120253
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>emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on chromosome 9 Contains
             three novel pseudogenes, a pseudogene similar to part of
             meprin A, alpha (PABA peptide hydrolase) (MEP1A), a
             pseudogene similar to part of G protein-coupled receptor
             116 (GPR116), two novel genes, the 5' end of a novel gene
             similar to ankyrin repeat domain 20A (ANKRD20A) and three
             CpG islands, complete sequence
          Length = 165886

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aataaaagcatatatttaca 64
             ||||||||||||||||||||
Sbjct: 16474 aataaaagcatatatttaca 16455
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>emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chromosome 9 Contains a
             novel gene, two novel pseudogenes, a  pseudogene similar
             to part of myosin V family protein, a tumor suppressor
             deleted in oral cancer-related 1 (DOC-1R) pseudogene, a
             pseudogene similar to part of prostaglandin E receptor 4
             (subtype EP4) (PTGER4) and a CpG island, complete sequence
          Length = 163569

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aataaaagcatatatttaca 64
             ||||||||||||||||||||
Sbjct: 93812 aataaaagcatatatttaca 93831
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>emb|AL591438.6| Human DNA sequence from clone RP11-452D2 on chromosome 9 Contains a
             pseudogene similar to part of ribosomal protein L7a
             (RPL7A), a novel pseudogene and a CpG island, complete
             sequence
          Length = 176097

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aataaaagcatatatttaca 64
             ||||||||||||||||||||
Sbjct: 35387 aataaaagcatatatttaca 35406
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>emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chromosome 9 Contains two
             novel pseudogene, a CDRT15 protein pseudogene, a
             pseudogene similar to part of meprin A, alpha (PABA
             peptide hydrolase) (MEP1A) and two CpG islands, complete
             sequence
          Length = 178933

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aataaaagcatatatttaca 64
             ||||||||||||||||||||
Sbjct: 69045 aataaaagcatatatttaca 69026
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>emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on chromosome 9 Contains a
              pseudogene similar to part of ribosomal protein L7a
              (RPL7A), three novel genes, three novel pseudogene and two
              CpG islands, complete sequence
          Length = 175271

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     aataaaagcatatatttaca 64
              ||||||||||||||||||||
Sbjct: 103241 aataaaagcatatatttaca 103222
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>emb|AL023713.1|HS324L9 Human DNA sequence from clone RP3-324L9 on chromosome 6p22.3-23,
             complete sequence
          Length = 73427

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    ttttctttatatagcaataa 49
             ||||||||||||||||||||
Sbjct: 54236 ttttctttatatagcaataa 54217
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>gb|AC183610.3| Pan troglodytes BAC clone CH251-223D9 from chromosome 9, complete
              sequence
          Length = 159456

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     aataaaagcatatatttaca 64
              ||||||||||||||||||||
Sbjct: 116210 aataaaagcatatatttaca 116229
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>emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chromosome 9 Contains a
             tumor suppressor deleted in oral cancer-related 1 (DOC-1R)
             pseudogene, a novel pseudogene and a CpG island, complete
             sequence
          Length = 163556

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aataaaagcatatatttaca 64
             ||||||||||||||||||||
Sbjct: 93827 aataaaagcatatatttaca 93846
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>emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chromosome 21, complete
             sequence
          Length = 278310

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aataaaagcatatatttaca 64
             ||||||||||||||||||||
Sbjct: 78818 aataaaagcatatatttaca 78799
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>emb|BX511233.10| Zebrafish DNA sequence from clone CH211-152P11 in linkage group 19,
             complete sequence
          Length = 193921

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    tacatacttgctgtgcagca 89
             ||||||||||||||||||||
Sbjct: 37301 tacatacttgctgtgcagca 37320
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>emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chromosome 22, complete
             sequence
          Length = 219376

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aataaaagcatatatttaca 64
             ||||||||||||||||||||
Sbjct: 22354 aataaaagcatatatttaca 22335
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>emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chromosome 9, complete
             sequence
          Length = 176845

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aataaaagcatatatttaca 64
             ||||||||||||||||||||
Sbjct: 68781 aataaaagcatatatttaca 68762
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>gb|AC139064.13| Mus musculus chromosome 1, clone RP23-76C20, complete sequence
          Length = 242463

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     tttatatagcaataaaagc 53
              |||||||||||||||||||
Sbjct: 105631 tttatatagcaataaaagc 105649
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>gb|AC079736.13| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0003G23, complete sequence
          Length = 135931

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    tttatatagcaataaaagc 53
             |||||||||||||||||||
Sbjct: 98485 tttatatagcaataaaagc 98503
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 35       tttatatagcaataaaagc 53
                |||||||||||||||||||
Sbjct: 26735727 tttatatagcaataaaagc 26735709
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>gb|AC147144.2| Pan troglodytes BAC clone CH251-278J22 from Y, complete sequence
          Length = 178957

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 28     tattttctttatatagcaataaaagca 54
              |||||||||||||||| | ||||||||
Sbjct: 122456 tattttctttatatagtactaaaagca 122482
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>gb|AC155829.5| Mus musculus 10 BAC RP24-534E16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 191442

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 45     aataaaagcatatatttacagca 67
              |||| ||||||||||||||||||
Sbjct: 129388 aatagaagcatatatttacagca 129410
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>emb|AL513175.10| Human DNA sequence from clone RP11-142L4 on chromosome 1 Contains the
             3' end of the RGS18 gene for regulator of G-protein
             signalling 18 and two processed pseudogenes similar to
             ATP-binding cassette, sub-family E (OABP), member (ABCE1),
             complete sequence
          Length = 94175

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 35    tttatatagcaataaaagc 53
             |||||||||||||||||||
Sbjct: 18242 tttatatagcaataaaagc 18224
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>emb|AL121761.5|HSJ122P22 Human DNA sequence from clone RP1-122P22 on chromosome 20 Contains the 3'
              end the SLC24A3 gene for solute carrier family 24
              (sodium/potassium/calcium exchanger) member 3, a novel gene
              and a CpG island, complete sequence
          Length = 118990

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 80     ctgtgcagcatgtactgta 98
              |||||||||||||||||||
Sbjct: 114456 ctgtgcagcatgtactgta 114474
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>emb|AL078623.28|HSJ1069C8 Human DNA sequence from clone RP5-1069C8 on chromosome 20 Contains the
             3' end of a novel gene, a novel gene and a CpG island,
             complete sequence
          Length = 177102

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 42    agcaataaaagcatatatttaca 64
             ||||||||| |||||||||||||
Sbjct: 25923 agcaataaacgcatatatttaca 25901
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>dbj|BS000638.2| Pan troglodytes chromosome Y clone: PTBY-011C06, complete sequence
          Length = 86985

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 28    tattttctttatatagcaataaaagca 54
             |||||||||||||||| | ||||||||
Sbjct: 44792 tattttctttatatagtactaaaagca 44818
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>dbj|BS000637.2| Pan troglodytes chromosome Y clone: PTBY-009K23, complete sequence
          Length = 144454

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 28     tattttctttatatagcaataaaagca 54
              |||||||||||||||| | ||||||||
Sbjct: 131499 tattttctttatatagtactaaaagca 131525
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>dbj|BS000660.1| Pan troglodytes chromosome Y clone:PTBY-005M17, complete sequences
          Length = 93004

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 28    tattttctttatatagcaataaaagca 54
             |||||||||||||||| | ||||||||
Sbjct: 27219 tattttctttatatagtactaaaagca 27245
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                           
Query: 28       tattttctttatatagcaataaaagca 54
                |||||||||||||||| | ||||||||
Sbjct: 19524930 tattttctttatatagtactaaaagca 19524904
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>gb|AC112250.4| Homo sapiens BAC clone RP11-710E1 from 4, complete sequence
          Length = 79475

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 28   tattttctttatatagcaa 46
            |||||||||||||||||||
Sbjct: 4007 tattttctttatatagcaa 4025
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>gb|AY243312.1| Vaccinia virus WR, complete genome
          Length = 194711

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    ctggagctattttctttat 39
             |||||||||||||||||||
Sbjct: 17051 ctggagctattttctttat 17069
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>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 53      catatatttacagcaatta 71
               |||||||||||||||||||
Sbjct: 1540688 catatatttacagcaatta 1540670
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>gb|AC091727.2|AC091727 Takifugu rubripes clone 250A8, complete sequence
          Length = 58366

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 40   atagcaataaaagcatata 58
            |||||||||||||||||||
Sbjct: 8689 atagcaataaaagcatata 8707
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>emb|BX255915.13| Zebrafish DNA sequence from clone CH211-245L1 in linkage group 5,
              complete sequence
          Length = 157382

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     ataaaagcatatatttaca 64
              |||||||||||||||||||
Sbjct: 116307 ataaaagcatatatttaca 116289
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>gb|AC149134.2| Medicago truncatula, complete sequence
          Length = 133336

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    attttctttatatagcaat 47
             |||||||||||||||||||
Sbjct: 19127 attttctttatatagcaat 19145
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>gb|AC154706.2| Mus musculus BAC clone RP23-132D23 from chromosome 14, complete
             sequence
          Length = 215330

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 58    atttacagcaattacatac 76
             |||||||||||||||||||
Sbjct: 60996 atttacagcaattacatac 60978
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>gb|AC084406.7|AC084406 Oryza sativa chromosome 3 BAC OSJNBa0067E01 genomic sequence, complete
             sequence
          Length = 140044

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    tttatatagcaataaaagc 53
             |||||||||||||||||||
Sbjct: 22113 tttatatagcaataaaagc 22131
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 35       tttatatagcaataaaagc 53
                |||||||||||||||||||
Sbjct: 26827050 tttatatagcaataaaagc 26827032
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 44       caataaaagcatatattta 62
                |||||||||||||||||||
Sbjct: 24513956 caataaaagcatatattta 24513938
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>emb|BX324171.9| Zebrafish DNA sequence from clone DKEYP-57C9 in linkage group 5,
             complete sequence
          Length = 151068

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 56    atatttacagcaattacat 74
             |||||||||||||||||||
Sbjct: 46093 atatttacagcaattacat 46111
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>gb|AC064833.6| Homo sapiens BAC clone RP11-549B23 from 2, complete sequence
          Length = 157638

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 39   tatagcaataaaagcatat 57
            |||||||||||||||||||
Sbjct: 3928 tatagcaataaaagcatat 3946
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>gb|AC010723.3|AC010723 Homo sapiens BAC clone RP11-139C10 from Y, complete sequence
          Length = 174420

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 28     tattttctttatatagcaataaaagca 54
              |||||||||||||||| | ||||||||
Sbjct: 146567 tattttctttatatagtactaaaagca 146541
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>gb|AY965326.1| Synthetic construct clone VACV-WR_023 unknown gene
          Length = 693

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 21  ctggagctattttctttat 39
           |||||||||||||||||||
Sbjct: 625 ctggagctattttctttat 607
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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0686E09
          Length = 156425

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    caataaaagcatatattta 62
             |||||||||||||||||||
Sbjct: 94340 caataaaagcatatattta 94322
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>emb|BX321890.5| Zebrafish DNA sequence from clone CH211-258D5 in linkage group 5,
             complete sequence
          Length = 147231

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    atatttacagcaattacat 74
             |||||||||||||||||||
Sbjct: 11229 atatttacagcaattacat 11211
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>dbj|AB034945.1| Herzogiella perrobusta chloroplast psaB gene for P700 chlorophyll
            a-apoprotein A2, partial cds
          Length = 1624

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 1050 tggagctattttctttata 1068
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>dbj|AB024672.1| Neodolichomitra yunnanensis chloroplast gene for P700 chlorophyll
            a-apoprotein A2, partial cds
          Length = 1139

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 1049 tggagctattttctttata 1067
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>dbj|AB024669.1| Rhytidiadelphus triquetrus chloroplast gene for P700 chlorophyll
            a-apoprotein A2, partial cds
          Length = 1624

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 1063 tggagctattttctttata 1081
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>dbj|AB024663.1| Hylocomium splendens chloroplast gene for P700 chlorophyll
            a-apoprotein A2, partial cds
          Length = 1632

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 1059 tggagctattttctttata 1077
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>dbj|AB024661.1| Hylocomiastrum pyrenaicum chloroplast gene for P700 chlorophyll
            a-apoprotein A2, partial cds
          Length = 1652

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 1063 tggagctattttctttata 1081
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>dbj|AB024659.1| Loeskeobryum cavifolium chloroplast gene for P700 chlorophyll
            a-apoprotein A2, partial cds
          Length = 1626

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 1063 tggagctattttctttata 1081
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>dbj|AB024651.1| Isopterygium vineale chloroplast gene for P700 chlorophyll
            a-apoprotein A2, partial cds
          Length = 1081

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 1061 tggagctattttctttata 1079
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>dbj|AB024646.1| Pylaisia polyantha chloroplast gene for P700 chlorophyll a-apoprotein
            A2, partial cds
          Length = 1150

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 1061 tggagctattttctttata 1079
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>dbj|AB024638.1| Stereophyllum radiculosum chloroplast gene for P700 chlorophyll
            a-apoprotein A2, partial cds
          Length = 1146

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 1063 tggagctattttctttata 1081
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>dbj|AB024636.1| Entodontopsis leucostega chloroplast gene for P700 chlorophyll
            a-apoprotein A2, partial cds
          Length = 1636

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 1063 tggagctattttctttata 1081
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>dbj|AB024633.1| Plagiothecium nemorale chloroplast gene for P700 chlorophyll
            a-apoprotein A2, partial cds
          Length = 1635

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 1062 tggagctattttctttata 1080
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>dbj|AB078009.1| Physcomitrella patens chloroplast genes for photosystem I P700
            apoprotein A, photosystem I P700 apoprotein B, ribosomal
            protein S14, complete cds, formylmethionyl tRNA-Met, DNA
            sequence
          Length = 5199

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   tggagctattttctttata 40
            |||||||||||||||||||
Sbjct: 3445 tggagctattttctttata 3463
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>emb|BX001041.6| Zebrafish DNA sequence from clone CH211-62M7, complete sequence
          Length = 167472

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     ataaaagcatatatttaca 64
              |||||||||||||||||||
Sbjct: 143177 ataaaagcatatatttaca 143159



 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     ataaaagcatatatttaca 64
              |||||||||||||||||||
Sbjct: 122532 ataaaagcatatatttaca 122514
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>emb|AL928628.9| Zebrafish DNA sequence from clone DKEY-5G18 in linkage group 7, complete
              sequence
          Length = 229942

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 56     atatttacagcaattacat 74
              |||||||||||||||||||
Sbjct: 173098 atatttacagcaattacat 173116
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>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome
          Length = 122890

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    tggagctattttctttata 40
             |||||||||||||||||||
Sbjct: 39202 tggagctattttctttata 39220
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>gb|M22812.1|VACLEND Vaccinia virus genome, left end
          Length = 14520

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   ctggagctattttctttat 39
            |||||||||||||||||||
Sbjct: 7915 ctggagctattttctttat 7933


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,540,738
Number of Sequences: 3902068
Number of extensions: 1540738
Number of successful extensions: 121729
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121374
Number of HSP's gapped (non-prelim): 355
length of query: 98
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 77
effective length of database: 17,151,101,840
effective search space: 1320634841680
effective search space used: 1320634841680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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