ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet79e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein 52 2e-04
2gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intr... 46 0.010
3gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplas... 40 0.59
4gb|AC169627.2| Mus musculus chromosome 5, clone wi1-232C12, comp... 38 2.3
5gb|AC122782.8| Mus musculus chromosome 5, clone RP24-224N3, comp... 38 2.3
6gb|AC002307.1|HUAC002307 Homo sapiens Chromosome 16 BAC clone CI... 38 2.3
7gb|AC114938.3| Homo sapiens chromosome 16 clone CTD-2244D9, comp... 38 2.3
8emb|CR628336.1| Legionella pneumophila str. Paris complete genome 38 2.3
9gb|AC141070.2| Homo sapiens chromosome 16 clone RP11-171B13, com... 38 2.3
10gb|AC133569.4| Homo sapiens chromosome 16 clone RP11-96K14, comp... 38 2.3
11gb|AC137800.3| Homo sapiens chromosome 16 clone RP11-652G5, comp... 38 2.3
12gb|AC141293.2| Homo sapiens chromosome 16 clone RP11-51M16, comp... 38 2.3
13gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, comp... 38 2.3
14gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, com... 38 2.3
15dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 2.3
16gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, comp... 38 2.3
17gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, com... 38 2.3
18gb|AC136437.2| Homo sapiens chromosome 16 clone RP11-347D23, com... 38 2.3
19gb|AC034194.5| Homo sapiens chromosome 3 clone RP11-669E3 map 3p... 38 2.3
20gb|AC026204.5| Homo sapiens chromosome 3 clone RP11-590A20 map 3... 38 2.3
21dbj|AP001069.1| Homo sapiens genomic DNA, chromosome 21q22.1, cl... 38 2.3
22gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome... 36 9.3
23gb|U58734.2| Caenorhabditis elegans cosmid T27A10, complete sequ... 36 9.3
24gb|BT013383.1| Lycopersicon esculentum clone 135517F, mRNA sequence 36 9.3
25gb|AC024137.1| Caenorhabditis elegans cosmid F59D8, complete seq... 36 9.3
26gb|U42835.1| Caenorhabditis elegans cosmid C04F6, complete sequence 36 9.3
27emb|BX119320.11| Human DNA sequence from clone RP11-533O1 on chr... 36 9.3
28emb|AL357499.10| Human DNA sequence from clone RP11-455L10 on ch... 36 9.3
29gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome... 36 9.3
30gb|U64599.1| Caenorhabditis elegans cosmid F56B6, complete sequence 36 9.3
31gb|AC025205.12| Homo sapiens chromosome 17, clone RP11-140O10, c... 36 9.3
32gb|AC093371.6| Genomic sequence for Mus musculus, clone RP23-36P... 36 9.3
33emb|BX322601.9| Zebrafish DNA sequence from clone DKEY-170H8 in ... 36 9.3
34emb|BX088704.7| Zebrafish DNA sequence from clone CH211-208M6 in... 36 9.3
35ref|NM_076212.3| Caenorhabditis elegans VITellogenin structural ... 36 9.3
36ref|NM_076211.2| Caenorhabditis elegans VITellogenin structural ... 36 9.3
37ref|NM_076188.3| Caenorhabditis elegans VITellogenin structural ... 36 9.3
38emb|BX323822.7| Zebrafish DNA sequence from clone DKEY-46C2 in l... 36 9.3
39gb|AY907824.1| Anopheles gambiae antimicrobial peptide defensin ... 36 9.3
40gb|AC007395.3|AC007395 Homo sapiens BAC clone RP11-504O1 from 2,... 36 9.3
41gb|AC006647.1|AC006647 Caenorhabditis elegans clone F59D8, compl... 36 9.3
42gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete... 36 9.3
43emb|AL645755.20| Zebrafish DNA sequence from clone RP71-1N18 in ... 36 9.3
44gb|AC006578.5|AC006578 Homo sapiens chromosome 17, clone 27_J_12... 36 9.3
45emb|X03044.1|CEVIT5G Caenorhabditis elegans vit-5 gene for vitel... 36 9.3
46emb|AL844224.3| Mouse DNA sequence from clone RP24-362D22 on chr... 36 9.3 
>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein
          Length = 1020

 Score = 52.0 bits (26), Expect = 2e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 38   aattcacaggttttacacaagcaaat 63
            ||||||||||||||||||||||||||
Sbjct: 1019 aattcacaggttttacacaagcaaat 994
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>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA,
            complete cds
          Length = 1133

 Score = 46.1 bits (23), Expect = 0.010
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 8    caactgaacttgaaattactcgggcgg 34
            ||||| |||||||||||||||||||||
Sbjct: 1097 caactcaacttgaaattactcgggcgg 1071
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>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome
          Length = 164921

 Score = 40.1 bits (20), Expect = 0.59
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     aactgaacttgaaattactc 28
             ||||||||||||||||||||
Sbjct: 98129 aactgaacttgaaattactc 98148
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>gb|AC169627.2| Mus musculus chromosome 5, clone wi1-232C12, complete sequence
          Length = 44799

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    actgaacttgaaattactc 28
             |||||||||||||||||||
Sbjct: 39913 actgaacttgaaattactc 39931
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>gb|AC122782.8| Mus musculus chromosome 5, clone RP24-224N3, complete sequence
          Length = 173643

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    actgaacttgaaattactc 28
             |||||||||||||||||||
Sbjct: 12554 actgaacttgaaattactc 12572
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>gb|AC002307.1|HUAC002307 Homo sapiens Chromosome 16 BAC clone CIT987-SK37914  ~complete genomic
              sequence, complete sequence
          Length = 161580

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     attcacaggttttacacaa 57
              |||||||||||||||||||
Sbjct: 123756 attcacaggttttacacaa 123738
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>gb|AC114938.3| Homo sapiens chromosome 16 clone CTD-2244D9, complete sequence
          Length = 166928

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 39   attcacaggttttacacaa 57
            |||||||||||||||||||
Sbjct: 6390 attcacaggttttacacaa 6372
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 9       aactgaacttgaaattact 27
               |||||||||||||||||||
Sbjct: 2771253 aactgaacttgaaattact 2771235
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>gb|AC141070.2| Homo sapiens chromosome 16 clone RP11-171B13, complete sequence
          Length = 161261

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    attcacaggttttacacaa 57
             |||||||||||||||||||
Sbjct: 87559 attcacaggttttacacaa 87541
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>gb|AC133569.4| Homo sapiens chromosome 16 clone RP11-96K14, complete sequence
          Length = 107932

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 39   attcacaggttttacacaa 57
            |||||||||||||||||||
Sbjct: 3345 attcacaggttttacacaa 3327
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>gb|AC137800.3| Homo sapiens chromosome 16 clone RP11-652G5, complete sequence
          Length = 196550

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    attcacaggttttacacaa 57
             |||||||||||||||||||
Sbjct: 82011 attcacaggttttacacaa 82029
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>gb|AC141293.2| Homo sapiens chromosome 16 clone RP11-51M16, complete sequence
          Length = 185339

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     attcacaggttttacacaa 57
              |||||||||||||||||||
Sbjct: 181995 attcacaggttttacacaa 182013
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>gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, complete sequence
          Length = 167832

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    attcacaggttttacacaa 57
             |||||||||||||||||||
Sbjct: 64125 attcacaggttttacacaa 64107
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>gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, complete sequence
          Length = 221622

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     attcacaggttttacacaa 57
              |||||||||||||||||||
Sbjct: 151955 attcacaggttttacacaa 151973
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>dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, section 52/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      aactgaacttgaaattact 27
              |||||||||||||||||||
Sbjct: 249759 aactgaacttgaaattact 249777
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>gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, complete sequence
          Length = 182046

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    attcacaggttttacacaa 57
             |||||||||||||||||||
Sbjct: 64125 attcacaggttttacacaa 64107
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>gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, complete sequence
          Length = 184294

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    attcacaggttttacacaa 57
             |||||||||||||||||||
Sbjct: 38149 attcacaggttttacacaa 38167
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>gb|AC136437.2| Homo sapiens chromosome 16 clone RP11-347D23, complete sequence
          Length = 161397

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     attcacaggttttacacaa 57
              |||||||||||||||||||
Sbjct: 128089 attcacaggttttacacaa 128071
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>gb|AC034194.5| Homo sapiens chromosome 3 clone RP11-669E3 map 3p, complete sequence
          Length = 179255

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 35    acaaattcacaggttttacacaa 57
             ||||||||||||| |||||||||
Sbjct: 71996 acaaattcacaggctttacacaa 71974
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>gb|AC026204.5| Homo sapiens chromosome 3 clone RP11-590A20 map 3p, complete sequence
          Length = 171061

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 35     acaaattcacaggttttacacaa 57
              ||||||||||||| |||||||||
Sbjct: 163593 acaaattcacaggctttacacaa 163571
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>dbj|AP001069.1| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B382J1, SOD-AML
             region, complete sequence
          Length = 105567

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     aactgaacttgaaattact 27
             |||||||||||||||||||
Sbjct: 41704 aactgaacttgaaattact 41722
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>gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome 7, complete sequence
          Length = 227709

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 35     acaaattcacaggttttacaca 56
              |||||||||||| |||||||||
Sbjct: 149669 acaaattcacagattttacaca 149648
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>gb|U58734.2| Caenorhabditis elegans cosmid T27A10, complete sequence
          Length = 35114

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 4   aacccaactgaacttgaa 21
           ||||||||||||||||||
Sbjct: 845 aacccaactgaacttgaa 828
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>gb|BT013383.1| Lycopersicon esculentum clone 135517F, mRNA sequence
          Length = 2477

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 36  caaattcacaggttttac 53
           ||||||||||||||||||
Sbjct: 762 caaattcacaggttttac 745
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>gb|AC024137.1| Caenorhabditis elegans cosmid F59D8, complete sequence
          Length = 13797

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 9442 aacccaactgaacttgaa 9425



 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 4   aacccaactgaacttgaa 21
           ||||||||||||||||||
Sbjct: 878 aacccaactgaacttgaa 861
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>gb|U42835.1| Caenorhabditis elegans cosmid C04F6, complete sequence
          Length = 25083

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     aacccaactgaacttgaa 21
             ||||||||||||||||||
Sbjct: 10964 aacccaactgaacttgaa 10981
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>emb|BX119320.11| Human DNA sequence from clone RP11-533O1 on chromosome 1, complete
             sequence
          Length = 68709

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     caactgaacttgaaatta 25
             ||||||||||||||||||
Sbjct: 14575 caactgaacttgaaatta 14592
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>emb|AL357499.10| Human DNA sequence from clone RP11-455L10 on chromosome 1 Contains part
             of the CHRM3 gene for muscarinic 3 cholinergic receptor,
             complete sequence
          Length = 150651

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 35    acaaattcacaggtttta 52
             ||||||||||||||||||
Sbjct: 50072 acaaattcacaggtttta 50089
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>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 35    acaaattcacaggtttta 52
             ||||||||||||||||||
Sbjct: 88151 acaaattcacaggtttta 88134
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>gb|U64599.1| Caenorhabditis elegans cosmid F56B6, complete sequence
          Length = 41984

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     aacccaactgaacttgaa 21
             ||||||||||||||||||
Sbjct: 38077 aacccaactgaacttgaa 38060
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>gb|AC025205.12| Homo sapiens chromosome 17, clone RP11-140O10, complete sequence
          Length = 188417

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 35     acaaattcacaggtttta 52
              ||||||||||||||||||
Sbjct: 107851 acaaattcacaggtttta 107868
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>gb|AC093371.6| Genomic sequence for Mus musculus, clone RP23-36P10, complete sequence
          Length = 177872

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     caacccaactgaacttga 20
             ||||||||||||||||||
Sbjct: 84209 caacccaactgaacttga 84192
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>emb|BX322601.9| Zebrafish DNA sequence from clone DKEY-170H8 in linkage group 7, complete
              sequence
          Length = 210153

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 46     ggttttacacaagcaaat 63
              ||||||||||||||||||
Sbjct: 166952 ggttttacacaagcaaat 166935
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>emb|BX088704.7| Zebrafish DNA sequence from clone CH211-208M6 in linkage group 7,
              complete sequence
          Length = 209042

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 46     ggttttacacaagcaaat 63
              ||||||||||||||||||
Sbjct: 181945 ggttttacacaagcaaat 181928
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>ref|NM_076212.3| Caenorhabditis elegans VITellogenin structural genes (yolk protein
            genes) family member (vit-3) (vit-3) mRNA, complete cds
          Length = 4861

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 4162 aacccaactgaacttgaa 4179
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>ref|NM_076211.2| Caenorhabditis elegans VITellogenin structural genes (yolk protein
            genes) family member (vit-4) (vit-4) mRNA, complete cds
          Length = 4842

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 4162 aacccaactgaacttgaa 4179
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>ref|NM_076188.3| Caenorhabditis elegans VITellogenin structural genes (yolk protein
            genes) family member (vit-5) (vit-5) mRNA, complete cds
          Length = 4862

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 4162 aacccaactgaacttgaa 4179
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>emb|BX323822.7| Zebrafish DNA sequence from clone DKEY-46C2 in linkage group 19, complete
              sequence
          Length = 204327

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 39     attcacaggttttacaca 56
              ||||||||||||||||||
Sbjct: 145222 attcacaggttttacaca 145205
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>gb|AY907824.1| Anopheles gambiae antimicrobial peptide defensin 3 gene, 5' UTR
          Length = 1384

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 33  ggacaaattcacaggttt 50
           ||||||||||||||||||
Sbjct: 193 ggacaaattcacaggttt 210
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>gb|AC007395.3|AC007395 Homo sapiens BAC clone RP11-504O1 from 2, complete sequence
          Length = 158458

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 33    ggacaaattcacaggttt 50
             ||||||||||||||||||
Sbjct: 56814 ggacaaattcacaggttt 56797
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>gb|AC006647.1|AC006647 Caenorhabditis elegans clone F59D8, complete sequence
          Length = 13797

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 9442 aacccaactgaacttgaa 9425



 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 4   aacccaactgaacttgaa 21
           ||||||||||||||||||
Sbjct: 878 aacccaactgaacttgaa 861
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>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence
          Length = 229073

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 39     attcacaggttttacaca 56
              ||||||||||||||||||
Sbjct: 173940 attcacaggttttacaca 173923
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>emb|AL645755.20| Zebrafish DNA sequence from clone RP71-1N18 in linkage group 22,
             complete sequence
          Length = 141779

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 37    aaattcacaggttttaca 54
             ||||||||||||||||||
Sbjct: 38525 aaattcacaggttttaca 38508
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>gb|AC006578.5|AC006578 Homo sapiens chromosome 17, clone 27_J_12, complete sequence
          Length = 76988

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 35    acaaattcacaggtttta 52
             ||||||||||||||||||
Sbjct: 18119 acaaattcacaggtttta 18102
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>emb|X03044.1|CEVIT5G Caenorhabditis elegans vit-5 gene for vitellogenin
          Length = 5375

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    aacccaactgaacttgaa 21
            ||||||||||||||||||
Sbjct: 4549 aacccaactgaacttgaa 4566
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>emb|AL844224.3| Mouse DNA sequence from clone RP24-362D22 on chromosome 4, complete
             sequence
          Length = 120333

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 25    actcgggcggacaaattcacag 46
             ||||||| ||||||||||||||
Sbjct: 27706 actcgggaggacaaattcacag 27727


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 464,935
Number of Sequences: 3902068
Number of extensions: 464935
Number of successful extensions: 29172
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29088
Number of HSP's gapped (non-prelim): 84
length of query: 63
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 42
effective length of database: 17,151,101,840
effective search space: 720346277280
effective search space used: 720346277280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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