>RENT1_MOUSE (Q9EPU0) Regulator of nonsense transcripts 1 (EC 3.6.1.-)|
           (ATP-dependent helicase RENT1) (Nonsense mRNA reducing
           factor 1) (NORF1) (Up-frameshift suppressor 1 homolog)
           (mUpf1)
          Length = 1113

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 135 DQPTHSLTHCSIADR*TYQICKAIH*FFCKGR-N*SDNFLINSL 7
           D P H+ ++C I D      C     +FC GR N S + ++N L
Sbjct: 112 DLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHL 155

>RENT1_HUMAN (Q92900) Regulator of nonsense transcripts 1 (EC 3.6.1.-)|
           (ATP-dependent helicase RENT1) (Nonsense mRNA reducing
           factor 1) (NORF1) (Up-frameshift suppressor 1 homolog)
           (hUpf1)
          Length = 1129

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 135 DQPTHSLTHCSIADR*TYQICKAIH*FFCKGR-N*SDNFLINSL 7
           D P H+ ++C I D      C     +FC GR N S + ++N L
Sbjct: 117 DLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHL 160

>RENT1_DROME (Q9VYS3) Regulator of nonsense transcripts 1 homolog|
          Length = 1180

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 129 PTHSLTHCSIADR*TYQICKAIH*FFCKGR-N*SDNFLINSL 7
           P H+  +C I D  T  +C     +FC GR + S + +IN L
Sbjct: 96  PPHACKYCGIHDPATVVMCNNCRKWFCNGRGSTSGSHIINHL 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,666,619
Number of Sequences: 219361
Number of extensions: 179435
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 80,573,946
effective HSP length: 22
effective length of database: 75,748,004
effective search space used: 1817952096
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)