ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet79d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SIGM_BACSU (O07582) RNA polymerase sigma factor sigM 28 8.8
2CP1A1_MICTO (Q92148) Cytochrome P450 1A1 (EC 1.14.14.1) (CYPIA1) 28 8.8

>SIGM_BACSU (O07582) RNA polymerase sigma factor sigM|
          Length = 163

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 93  DKLGETFHRGYAHLHLFDRS 152
           D L ETF R Y H+H +D S
Sbjct: 30  DLLQETFMRAYIHIHSYDHS 49



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>CP1A1_MICTO (Q92148) Cytochrome P450 1A1 (EC 1.14.14.1) (CYPIA1)|
          Length = 515

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 37  YTTVRQAMSITAGNTYEEQTNWGKLFIEDMLTYTFSTDQAGL 162
           + TVRQA+ I  G+       +   FI D  +  FSTDQAG+
Sbjct: 92  HETVRQAL-IKQGHDLRPPDLYSFQFINDGKSLAFSTDQAGV 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,852,656
Number of Sequences: 219361
Number of extensions: 439858
Number of successful extensions: 1292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 80,573,946
effective HSP length: 35
effective length of database: 72,896,311
effective search space used: 1749511464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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